View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19025_low_7 (Length: 527)

Name: NF19025_low_7
Description: NF19025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19025_low_7
NF19025_low_7
[»] chr2 (19 HSPs)
chr2 (1-517)||(23783428-23783956)
chr2 (235-517)||(23768115-23768397)
chr2 (1-228)||(23768428-23768654)
chr2 (267-512)||(8379522-8379767)
chr2 (269-474)||(30394884-30395089)
chr2 (3-186)||(30384849-30385032)
chr2 (272-487)||(30437132-30437347)
chr2 (272-480)||(30384444-30384652)
chr2 (272-432)||(30424899-30425059)
chr2 (272-432)||(30475960-30476120)
chr2 (1-186)||(30395601-30395786)
chr2 (272-432)||(30430932-30431092)
chr2 (272-432)||(30468998-30469158)
chr2 (273-432)||(30483921-30484080)
chr2 (1-89)||(8379072-8379160)
chr2 (1-61)||(30476499-30476559)
chr2 (1-54)||(30437554-30437607)
chr2 (1-60)||(30425260-30425319)
chr2 (1-67)||(30484671-30484737)
[»] chr5 (2 HSPs)
chr5 (273-511)||(41627756-41627994)
chr5 (3-112)||(41626923-41627032)
[»] chr8 (4 HSPs)
chr8 (339-430)||(15852326-15852417)
chr8 (339-432)||(15845119-15845212)
chr8 (339-432)||(15859313-15859406)
chr8 (339-432)||(15866019-15866112)


Alignment Details
Target: chr2 (Bit Score: 468; Significance: 0; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Original strand, 23783428 - 23783956
Alignment:
Q  1 tctcaggattgaaaatcttagcatcatcaccccatagttcacagtcatggtgaatcaaaacaattggcatgtaaacctccattccagcatataatgtcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23783428 tctcaggattgaaaatcttagcatcatcaccccatagttcacaatcatggtgaatcaaaacaattggcatgtaaacctccattccagcatataatgtcaa 23783527  T
Q  101 gtctccaagttttatatcattctcaacttttcgagcaacgccggttacaggagggtacaacctcaaaacctcatacaaaatcatggccatctaaaacaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23783528 gtctccaagttttatatcattctcaacttttcgagcaacgccggttacaggagggtacaacctcaaaacctcatacaaaatcatggccatctaaaacaaa 23783627  T
Q  201 acaaatttatgttaccaaaagtattaagactatt------------acataactaagctgcaattagaagaagatgaaattaaaatacttacaatcttaa 288  Q
    ||||||||||||||||||||||||||||||||||            |||||||||||||||||||| || || |||||||||||||||||||||||||||    
T  23783628 acaaatttatgttaccaaaagtattaagactattggaatttatgttacataactaagctgcaattacaaaaatatgaaattaaaatacttacaatcttaa 23783727  T
Q  289 gtttatttagtccatcaaagtcgggtttttcattgccaaatatctctaatacttccttcctcgcacgttcttgccaatcagggtacctactcaacaacac 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23783728 gtttatttagtccatcaaagtcgggtttttcattgccaaatatctctaatacttccttccttgcacgttcttgccaatcagggtacctactcaacaacac 23783827  T
Q  389 catcgtccaaacaagcaaatctgaagtagtctcttgccctgcaacatggaataacctgcattccccgactacttcttcaagactcaatcccatattcttg 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23783828 catcgtccaaacaagcaaatctgaagtagtctcttgccctgcaacatggaataacctgcattccccgactacttcttcaagactcaatcccatattcttg 23783927  T
Q  489 acgtttccatgttctttaatttctctgtg 517  Q
    |||||||||||||||||||||||||||||    
T  23783928 acgtttccatgttctttaatttctctgtg 23783956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 235 - 517
Target Start/End: Complemental strand, 23768397 - 23768115
Alignment:
Q  235 acataactaagctgcaattagaagaagatgaaattaaaatacttacaatcttaagtttatttagtccatcaaagtcgggtttttcattgccaaatatctc 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23768397 acataactaagctgcaattagaagaagatgaaattaaaatacttacaatcttaagtttatttagtccatcaaagtctggtttttcattgccaaatatctc 23768298  T
Q  335 taatacttccttcctcgcacgttcttgccaatcagggtacctactcaacaacaccatcgtccaaacaagcaaatctgaagtagtctcttgccctgcaaca 434  Q
    ||||||||||||||  ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23768297 taatacttccttccgggcacgttcttgccaatctgggtgcctactcaacaacaccatcgtccaaacaagcaaatctgaagtagtctcttgccctgcaata 23768198  T
Q  435 tggaataacctgcattccccgactacttcttcaagactcaatcccatattcttgacgtttccatgttctttaatttctctgtg 517  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  23768197 tggaataacatgcattccccgactacttcttcaagactcaatcccatattcttgaagtttccatgttctttaatttctttgtg 23768115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 23768654 - 23768428
Alignment:
Q  1 tctcaggattgaaaatcttagcatcatcaccccatagttcacagtcatggtgaatcaaaacaattggcatgtaaacctccattccagcatataatgtcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||| |||||||||||||||||||||||    
T  23768654 tctcaggattgaaaatcttagcatcatcaccccatagttcacaatcatggtgaatcaaaacaatcggcaagtaaacatccattccagcatataatgtcaa 23768555  T
Q  101 gtctccaagttttatatcattctcaacttttcgagcaacgccggttacaggagggtacaacctcaaaacctcatacaaaatcatggccatctaaaacaaa 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  23768554 gtctccaagttttatatcattctcaacttttcgagaaacgccggttataggagggtacaacctcaaaacctcatacaaaatcatgcccatctataacaaa 23768455  T
Q  201 acaaatttatgttaccaaaagtattaag 228  Q
    || |||| ||||||||||||||||||||    
T  23768454 ac-aattgatgttaccaaaagtattaag 23768428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 267 - 512
Target Start/End: Original strand, 8379522 - 8379767
Alignment:
Q  267 attaaaatacttacaatcttaagtttatttagtccatcaaagtcgggtttttcattgccaaatatctctaatacttccttcctcgcacgttcttgccaat 366  Q
    ||||||||||||||||||||||||||||||||||| ||| |||| |||||||  ||||||||||| | ||||||||||| ||| ||||||||||||||||    
T  8379522 attaaaatacttacaatcttaagtttatttagtccttcatagtctggttttttgttgccaaatatttgtaatacttcctccctagcacgttcttgccaat 8379621  T
Q  367 cagggtacctactcaacaacaccatcgtccaaacaagcaaatctgaagtagtctcttgccctgcaacatggaataacctgcattccccgactacttcttc 466  Q
    ||||||||||||||||||| | ||| ||||||||||||| |  ||||||||  ||||||||||| |  | ||||||| |||||||||| ||||| |||||    
T  8379622 cagggtacctactcaacaatatcattgtccaaacaagcatagttgaagtagattcttgccctgccaagtagaataacttgcattcccccactacatcttc 8379721  T
Q  467 aagactcaatcccatattcttgacgtttccatgttctttaatttct 512  Q
    |||||||| |||||||||||||  ||||||||| ||| ||||||||    
T  8379722 aagactcattcccatattcttgttgtttccatgatctctaatttct 8379767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 269 - 474
Target Start/End: Complemental strand, 30395089 - 30394884
Alignment:
Q  269 taaaatacttacaatcttaagtttatttagtccatcaaagtcgggtttttcattgccaaatatctctaatacttccttcctcgcacgttcttgccaatca 368  Q
    |||| ||||||||||||| || |||||||| |||||||| || |||||||  |||||||| |  | ||| ||||||| ||| ||||||  ||||||||||    
T  30395089 taaattacttacaatctttaggttatttagcccatcaaaatctggttttttgttgccaaagacatgtaacacttcctccctagcacgtgtttgccaatca 30394990  T
Q  369 gggtacctactcaacaacaccatcgtccaaacaagcaaatctgaagtagtctcttgccctgcaacatggaataacctgcattccccgactacttcttcaa 468  Q
    ||||||||||||||||| | ||| ||||||||||||||| | |||||||| ||||||||||||| |||||| ||| |||||||| ||||||| |  ||||    
T  30394989 gggtacctactcaacaatatcattgtccaaacaagcaaaaccgaagtagtttcttgccctgcaaaatggaacaacttgcattcctcgactacatgatcaa 30394890  T
Q  469 gactca 474  Q
    ||||||    
T  30394889 gactca 30394884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 3 - 186
Target Start/End: Complemental strand, 30385032 - 30384849
Alignment:
Q  3 tcaggattgaaaatcttagcatcatcaccccatagttcacagtcatggtgaatcaaaacaattggcatgtaaacctccattccagcatataatgtcaagt 102  Q
    ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||| |||||| | | ||| ||||| |||||||  || ||| |  |    
T  30385032 tcaggattgaacattttagcatcatcaccccatagttcgcagtcatggtgaatcaaaagaattggtaagaaaatctccactccagcaggtagtgttagat 30384933  T
Q  103 ctccaagttttatatcattctcaacttttcgagcaacgccggttacaggagggtacaacctcaaaacctcatacaaaatcatgg 186  Q
     ||||||||| | ||| |||||||| |||||||||| |||  |||| |||||||| ||||| | ||||||||||||||||||||    
T  30384932 ttccaagtttcacatctttctcaacatttcgagcaaggccaattacgggagggtataacctaagaacctcatacaaaatcatgg 30384849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 272 - 487
Target Start/End: Complemental strand, 30437347 - 30437132
Alignment:
Q  272 aatacttacaatcttaagtttatttagtccatcaaagtcgggtttttcattgccaaatatctctaatacttccttcctcgcacgttcttgccaatcaggg 371  Q
    |||||||||||||||||| | | |||| |||||||| |||||||| |  ||||||||||  | ||||||||||| ||| |||||| ||||||||||||||    
T  30437347 aatacttacaatcttaagatgacttagcccatcaaaatcgggtttattgttgccaaatacttgtaatacttcctcccttgcacgtgcttgccaatcaggg 30437248  T
Q  372 tacctactcaacaacaccatcgtccaaacaagcaaatctgaagtagtctcttgccctgcaacatggaataacctgcattccccgactacttcttcaagac 471  Q
    ||||||||||||||||| || ||||||||||||||| | ||||| ||||||   |||||||  | ||||| | |||||||| | | ||| || |||||||    
T  30437247 tacctactcaacaacactattgtccaaacaagcaaaacagaagttgtctctgcacctgcaaagtagaatagcttgcattcctctattacatcgtcaagac 30437148  T
Q  472 tcaatcccatattctt 487  Q
    ||| ||| | ||||||    
T  30437147 tcattccaacattctt 30437132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 272 - 480
Target Start/End: Complemental strand, 30384652 - 30384444
Alignment:
Q  272 aatacttacaatcttaagtttatttagtccatcaaagtcgggtttttcattgccaaatatctctaatacttccttcctcgcacgttcttgccaatcaggg 371  Q
    ||||||||| ||||| || |||||||| |||||||| || ||||||   |||||||| |  | ||| ||||||| ||| |||||   |||||||||||||    
T  30384652 aatacttacgatctttaggttatttagcccatcaaaatctggttttctgttgccaaagacatgtaacacttcctcccttgcacgggtttgccaatcaggg 30384553  T
Q  372 tacctactcaacaacaccatcgtccaaacaagcaaatctgaagtagtctcttgccctgcaacatggaataacctgcattccccgactacttcttcaagac 471  Q
    ||||||||||| || | ||| ||||||||||||||| | |||||||||||||| |||||||  ||||| ||| |||||||| ||||||| || |||||||    
T  30384552 tacctactcaataatatcattgtccaaacaagcaaaaccgaagtagtctcttgacctgcaaagtggaacaacttgcattcctcgactacatcatcaagac 30384453  T
Q  472 tcaatccca 480  Q
    ||| |||||    
T  30384452 tcattccca 30384444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 272 - 432
Target Start/End: Complemental strand, 30425059 - 30424899
Alignment:
Q  272 aatacttacaatcttaagtttatttagtccatcaaagtcgggtttttcattgccaaatatctctaatacttccttcctcgcacgttcttgccaatcaggg 371  Q
    ||||||||| |||||||| | | |||| || |||||||| ||||| |  |||||||| |  | ||||||||| | ||| |||||||||||||||||||||    
T  30425059 aatacttacgatcttaagatgacttagcccgtcaaagtcaggtttattgttgccaaaaacttgtaatacttcttcccttgcacgttcttgccaatcaggg 30424960  T
Q  372 tacctactcaacaacaccatcgtccaaacaagcaaatctgaagtagtctcttgccctgcaa 432  Q
    |||||||||||||||||||| ||||||||||||||| | ||||| |||||||| |||||||    
T  30424959 tacctactcaacaacaccattgtccaaacaagcaaaacagaagtggtctcttggcctgcaa 30424899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 272 - 432
Target Start/End: Complemental strand, 30476120 - 30475960
Alignment:
Q  272 aatacttacaatcttaagtttatttagtccatcaaagtcgggtttttcattgccaaatatctctaatacttccttcctcgcacgttcttgccaatcaggg 371  Q
    ||||||||||||||||||||  |||||||||||||| || ||||||| |||||| || |  |  |||||||||| ||| |||||  |||||||||||||     
T  30476120 aatacttacaatcttaagttggtttagtccatcaaaatctggttttttattgccgaagacttgcaatacttcctcccttgcacgagcttgccaatcagga 30476021  T
Q  372 tacctactcaacaacaccatcgtccaaacaagcaaatctgaagtagtctcttgccctgcaa 432  Q
    |||||||||||||||| ||| | ||||||||||||| | ||||| ||||||||||||||||    
T  30476020 tacctactcaacaacatcattgcccaaacaagcaaaacagaagtggtctcttgccctgcaa 30475960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 30395786 - 30395601
Alignment:
Q  1 tctcaggattgaaaatcttagcatcatcaccccatagttcacagtcatggtgaatcaaaacaattggcatgtaaacctccattccagcatataatgtcaa 100  Q
    ||||||||||||| || ||||||||||| ||||||||||  |||||||| |||||||||| |||||| | | ||||||||| |||||||  ||||||||     
T  30395786 tctcaggattgaacattttagcatcatcgccccatagtttgcagtcatgatgaatcaaaagaattggtaagaaaacctccactccagcaggtaatgtcag 30395687  T
Q  101 gtctccaagttttatatcattctcaacttttcgagcaacgccggttacaggagggtacaacctcaaaacctcatacaaaatcatgg 186  Q
    || ||||||||| ||||| ||| |||| |||| |||||  ||  |||| |||||||| || || | ||||||||||||||||||||    
T  30395686 gtttccaagtttcatatctttcacaacatttctagcaagtcccattactggagggtataatctaagaacctcatacaaaatcatgg 30395601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 272 - 432
Target Start/End: Complemental strand, 30431092 - 30430932
Alignment:
Q  272 aatacttacaatcttaagtttatttagtccatcaaagtcgggtttttcattgccaaatatctctaatacttccttcctcgcacgttcttgccaatcaggg 371  Q
    ||||||||| |||||||| | | |||| || ||||| || ||||| |  ||||||||||  | ||||||||| | ||| ||||||||||||||||| ||     
T  30431092 aatacttacgatcttaagatgacttagcccgtcaaattctggtttattgttgccaaatacttgtaatacttcttcccttgcacgttcttgccaatctggt 30430993  T
Q  372 tacctactcaacaacaccatcgtccaaacaagcaaatctgaagtagtctcttgccctgcaa 432  Q
    |||||||||||||||||||| ||||||||||||||| | ||||| |||||||| |||||||    
T  30430992 tacctactcaacaacaccattgtccaaacaagcaaaacagaagtggtctcttgtcctgcaa 30430932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 272 - 432
Target Start/End: Complemental strand, 30469158 - 30468998
Alignment:
Q  272 aatacttacaatcttaagtttatttagtccatcaaagtcgggtttttcattgccaaatatctctaatacttccttcctcgcacgttcttgccaatcaggg 371  Q
    |||||||||||||||||| | | |||| || ||||| || ||||| |  |||||||| | || ||||||||| | ||| |||||  |||||||||| |||    
T  30469158 aatacttacaatcttaagatgacttagcccgtcaaaatcaggtttattgttgccaaagacctgtaatacttcttcccttgcacgcgcttgccaatcgggg 30469059  T
Q  372 tacctactcaacaacaccatcgtccaaacaagcaaatctgaagtagtctcttgccctgcaa 432  Q
    ||||||||||| |||||||| ||||||||||||||| | ||||| |||||||| |||||||    
T  30469058 tacctactcaataacaccattgtccaaacaagcaaaacagaagtggtctcttggcctgcaa 30468998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 273 - 432
Target Start/End: Complemental strand, 30484080 - 30483921
Alignment:
Q  273 atacttacaatcttaagtttatttagtccatcaaagtcgggtttttcattgccaaatatctctaatacttccttcctcgcacgttcttgccaatcagggt 372  Q
    ||||||||||||||||| |  |||||||| ||||| || |||| ||  |||||||| |  | ||  |||||||  || |||||| ||||||||| |||||    
T  30484080 atacttacaatcttaagatggtttagtccttcaaaatctggttgtttgttgccaaaaacttgtagcacttcctctcttgcacgtgcttgccaattagggt 30483981  T
Q  373 acctactcaacaacaccatcgtccaaacaagcaaatctgaagtagtctcttgccctgcaa 432  Q
     ||||||||| || || || ||||||||||||||| ||||||| || |||| ||||||||    
T  30483980 gcctactcaataatacaattgtccaaacaagcaaaactgaagtggtttcttcccctgcaa 30483921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 8379072 - 8379160
Alignment:
Q  1 tctcaggattgaaaatcttagcatcatcaccccatagttcacagtcatggtgaatcaaaacaattggcatgtaaacctccattccagca 89  Q
    ||||||||||||| ||||| |||||||||||||||||||||  || ||| |||| ||||| |||||| | | |||| |||| |||||||    
T  8379072 tctcaggattgaacatctttgcatcatcaccccatagttcattgttatgttgaagcaaaataattggtaagaaaacttccactccagca 8379160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 30476559 - 30476499
Alignment:
Q  1 tctcaggattgaaaatcttagcatcatcaccccatagttcacagtcatggtgaatcaaaac 61  Q
    ||||||||||||| | ||||||||| ||||||||||||||  |||||||||||| ||||||    
T  30476559 tctcaggattgaacaccttagcatcttcaccccatagttcggagtcatggtgaaccaaaac 30476499  T

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Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 30437607 - 30437554
Alignment:
Q  1 tctcaggattgaaaatcttagcatcatcaccccatagttcacagtcatggtgaa 54  Q
    ||||||||||||| | ||||||||| ||||||||||||||  ||||||||||||    
T  30437607 tctcaggattgaacaccttagcatcgtcaccccatagttcggagtcatggtgaa 30437554  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 30425319 - 30425260
Alignment:
Q  1 tctcaggattgaaaatcttagcatcatcaccccatagttcacagtcatggtgaatcaaaa 60  Q
    |||| |||||||| | ||||||||||||||||||||||||   ||||||||||| |||||    
T  30425319 tctcgggattgaacaccttagcatcatcaccccatagttctatgtcatggtgaaccaaaa 30425260  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 30484737 - 30484671
Alignment:
Q  1 tctcaggattgaaaatcttagcatcatcaccccatagttcacagtcatggtgaatcaaaacaattgg 67  Q
    ||||||||||||| | ||||||||| |||||||||||||||  ||  ||||||||| |||| |||||    
T  30484737 tctcaggattgaacaccttagcatcttcaccccatagttcatggttgtggtgaatccaaactattgg 30484671  T

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Target: chr5 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 273 - 511
Target Start/End: Original strand, 41627756 - 41627994
Alignment:
Q  273 atacttacaatcttaagtttatttagtccatcaaagtcgggtttttcattgccaaatatctctaatacttccttcctcgcacgttcttgccaatcagggt 372  Q
    |||||||||||||| |  |||||||| |||||||| |  |||||||  |||||||| || | ||||||||||| ||| || | | ||||||| |||||||    
T  41627756 atacttacaatcttcaagttatttagcccatcaaaattaggttttttgttgccaaagatttgtaatacttcctcccttgcccttgcttgccactcagggt 41627855  T
Q  373 acctactcaacaacaccatcgtccaaacaagcaaatctgaagtagtctcttgccctgcaacatggaataacctgcattccccgactacttcttcaagact 472  Q
    |||||||||| || ||||| ||||||||||| |||  |||||||||||||||||||||||  | ||| ||| ||||||||   | ||| ||||||| | |    
T  41627856 acctactcaataataccattgtccaaacaagtaaagttgaagtagtctcttgccctgcaaagtagaacaacttgcattcctgaattacatcttcaatatt 41627955  T
Q  473 caatcccatattcttgacgtttccatgttctttaatttc 511  Q
    || ||||| ||||  |  |||||||||||||||||||||    
T  41627956 cattcccacattcacgttgtttccatgttctttaatttc 41627994  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 3 - 112
Target Start/End: Original strand, 41626923 - 41627032
Alignment:
Q  3 tcaggattgaaaatcttagcatcatcaccccatagttcacagtcatggtgaatcaaaacaattggcatgtaaacctccattccagcatataatgtcaagt 102  Q
    ||||||||||| || ||||||||||||||||||| |||||| |||||||| | ||| | |||||||||| ||||||||| ||||||| ||||||| | ||    
T  41626923 tcaggattgaacattttagcatcatcaccccataattcacaatcatggtgcaacaatataattggcatgaaaacctccactccagcagataatgttaggt 41627022  T
Q  103 ctccaagttt 112  Q
     |||||||||    
T  41627023 ttccaagttt 41627032  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 430
Target Start/End: Original strand, 15852326 - 15852417
Alignment:
Q  339 acttccttcctcgcacgttcttgccaatcagggtacctactcaacaacaccatcgtccaaacaagcaaatctgaagtagtctcttgccctgc 430  Q
    ||||||| ||| |||||||||||||| ||||| ||||| |  || |||||||| |||||||| ||||||  |||||| ||||||||||||||    
T  15852326 acttcctgccttgcacgttcttgccattcaggatacctgcctaataacaccattgtccaaaccagcaaacttgaagtggtctcttgccctgc 15852417  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 432
Target Start/End: Original strand, 15845119 - 15845212
Alignment:
Q  339 acttccttcctcgcacgttcttgccaatcagggtacctactcaacaacaccatcgtccaaacaagcaaatctgaagtagtctcttgccctgcaa 432  Q
    ||||||| ||| |||||||||||||| ||||| ||||| |  || |||||||| |||||||| ||||||  |||||| ||||||||||| ||||    
T  15845119 acttcctgccttgcacgttcttgccattcaggatacctgcctaataacaccattgtccaaaccagcaaacttgaagtggtctcttgcccagcaa 15845212  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 432
Target Start/End: Original strand, 15859313 - 15859406
Alignment:
Q  339 acttccttcctcgcacgttcttgccaatcagggtacctactcaacaacaccatcgtccaaacaagcaaatctgaagtagtctcttgccctgcaa 432  Q
    ||||||| ||| |||||| ||||||| ||||| ||||| |  || |||||||| |||||||| ||||||  | |||| ||||||||||| ||||    
T  15859313 acttcctcccttgcacgtgcttgccattcaggatacctgcctaataacaccattgtccaaaccagcaaactttaagtcgtctcttgcccagcaa 15859406  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 432
Target Start/End: Original strand, 15866019 - 15866112
Alignment:
Q  339 acttccttcctcgcacgttcttgccaatcagggtacctactcaacaacaccatcgtccaaacaagcaaatctgaagtagtctcttgccctgcaa 432  Q
    ||||||| ||| |||||| ||||||| ||||| ||||| |  || |||||||| |||||||| ||||||  ||| || ||||||||||| ||||    
T  15866019 acttcctgccttgcacgtgcttgccattcaggatacctgcctaataacaccattgtccaaaccagcaaacttgaggtggtctcttgcccagcaa 15866112  T

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