View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19026_high_1 (Length: 627)
Name: NF19026_high_1
Description: NF19026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19026_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-104; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 244 - 518
Target Start/End: Complemental strand, 3894913 - 3894639
Alignment:
| Q |
244 |
ctcatttgtatcacgtgcaaattgtttgatgtcctcagaatctacaccttcactcattgtttctcttgctctgtcggctatttctgcatcacgttttgtc |
343 |
Q |
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| T |
3894913 |
ctcatttgcatcacgtgagtattgtttgatgtcctcagaatctacaccttcactcattgtttctcttgctctgtcggctatttctgcatcacgttttgtc |
3894814 |
T |
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| Q |
344 |
tttgatgaagaatggtcataggcccaattggttgaaggttttcttgttgattctgctgaatttctccactgnnnnnnnnnnnnnnnnnnnnnnttaatga |
443 |
Q |
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| T |
3894813 |
tttgatgaagaatggtcataggcccaattggttgaaggttttcttgttgattctgctgaatttctccactgaaaaaaataaatatccaaaaaattaatga |
3894714 |
T |
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| Q |
444 |
atctttgatgccatcatttagttagtttatatttatacaatatctctaaaaataactatttggcaattatttaat |
518 |
Q |
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| T |
3894713 |
atctttgatgccatcatttagttagtttatatttatacaatatctctaaaaataactatttggcaattatttaat |
3894639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 3895180 - 3895045
Alignment:
| Q |
1 |
tgcatcataagcataatctctagccttctctccagcattctcagccttctctgcagccctatttgttccttctctggctttatcccacacagaacctgct |
100 |
Q |
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| T |
3895180 |
tgcatcataagcataatctctagccttctctccagcattctcagccttctctgcagccctatttgttccttctctggctttatcccacacagaacctgct |
3895081 |
T |
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| Q |
101 |
gcttcattggttctgtcttttacctcataagcatag |
136 |
Q |
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| T |
3895080 |
gcttcattggttctgtcttttacctcataagcatag |
3895045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 514 - 611
Target Start/End: Complemental strand, 3894599 - 3894502
Alignment:
| Q |
514 |
ttaatctataaaattgtcaatgagaatataatagctaatcagtacaattttctcgcaatttaattgtaccaatgcaactatgtgagtaatctaaaatc |
611 |
Q |
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| T |
3894599 |
ttaatgtataaaattgtcaatgagaatataatagctaatcagtacaattttctcgcaatttaattgtaccaatgcaactatgtgagtaatctaaaatc |
3894502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 3894986 - 3894910
Alignment:
| Q |
204 |
tggctttctcccacattgaacctgcagcatcttttgtcttctcatttgtatcacgtgcaaattgtttgatgtcctca |
280 |
Q |
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| T |
3894986 |
tggctttctcccacattgaacctgcagcatcttttgtcttctcatttgtatcacgtgcaaattgtttgatgtcctca |
3894910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 3895056 - 3894962
Alignment:
| Q |
5 |
tcataagcataatctctagccttctctccagcattctcagccttctctgcagccctatttgttccttctctggctttatcccacacagaacctgc |
99 |
Q |
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| T |
3895056 |
tcataagcatagtctctagctttctctccagcattctctgccttctctgcagctctgtctgttccttctttggctttctcccacattgaacctgc |
3894962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 3895312 - 3895271
Alignment:
| Q |
1 |
tgcatcataagcataatctctagccttctctccagcattctc |
42 |
Q |
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|||||||||||||||||||||||| ||||| |||||| |||| |
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| T |
3895312 |
tgcatcataagcataatctctagctttctccccagcactctc |
3895271 |
T |
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