View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19026_high_10 (Length: 451)
Name: NF19026_high_10
Description: NF19026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19026_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 5951688 - 5951245
Alignment:
| Q |
1 |
attccaagttctcaacatcaacaacatacagaaattacagaacacaaacagaaagtacagaaatctatgtcgtgaacagatcatgttcattcaataggga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5951688 |
attccaagttctcaacatcaacaacatacagaaattacagaacacaaacagaaagtacagaaatctatgtcatgaacagatcatgttcattcaataggga |
5951589 |
T |
|
| Q |
101 |
tcataacctcattagtcctaaacattggaagtgtccaaggaggattgtacctacccaacaaaaaatccccaataaccttaaaaccatctctctccaaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5951588 |
tcataacctcattagtcctaaacattggaagtgtccaaggaggattgtacctacccaataaaaaatccccaataaccttaaaaccatctctctccaaact |
5951489 |
T |
|
| Q |
201 |
cagcctcaacttctccaccttctccttcaccacttcatcactagccacaccactaaacttcaccactccatatttcctctcaccttcctctcttatcaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5951488 |
cagcctcaacttctccaccttctccttcaccacttcatcactagccacaccactaaacttcaccactccatatttcctctcaccttcctctcttatcaca |
5951389 |
T |
|
| Q |
301 |
accctttcatcagttggcttaggtgcttcttctgctttttcataactagatggcaaaataaactgcatagtcaccatcttgttcctctcaccttcttcac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5951388 |
accctttcatcagttggcttaggtgcttcttctgctttttcataactagatggcaaaataaactgcatagtcaccatcttgttcctctcaccttcttcac |
5951289 |
T |
|
| Q |
401 |
tagacttagtgacaactggtgctgtcatagcaatcttctctgct |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5951288 |
tagacttagtgacaactggtgctgtcatagcaatcttctctgct |
5951245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 80 - 390
Target Start/End: Complemental strand, 5942808 - 5942495
Alignment:
| Q |
80 |
atcatgttcattcaatagggatcataacctcattagtcctaaacattggaagtgtccaaggagg---attgtacctacccaacaaaaaatccccaataac |
176 |
Q |
| |
|
||||||||||||||| ||| |||| |||||||||||||||||||||||||| ||| || ||| ||| |||||||||||||||||||| |||||||| |
|
|
| T |
5942808 |
atcatgttcattcaacaggaatcagaacctcattagtcctaaacattggaattgtaatagcaggtggattatacctacccaacaaaaaatctccaataac |
5942709 |
T |
|
| Q |
177 |
cttaaaaccatctctctccaaactcagcctcaacttctccaccttctccttcaccacttcatcactagccacaccactaaacttcaccactccatatttc |
276 |
Q |
| |
|
||||||||||||| ||||||||| || ||||||||||||||| ||||||||||||||||||||||| ||||| || | ||| ||||||| ||||||||| |
|
|
| T |
5942708 |
cttaaaaccatctttctccaaacacaacctcaacttctccactttctccttcaccacttcatcacttgccactcctccaaaagtcaccaccccatatttc |
5942609 |
T |
|
| Q |
277 |
ctctcaccttcctctcttatcacaaccctttcatcagttggcttaggtgcttcttctgctttttcataactagatggcaaaataaactgcatagtcacca |
376 |
Q |
| |
|
|| ||||||| ||||||||||||||||| |||||| | ||||||||| |||| ||| ||||| ||| |||| |||||| |||||||||||||||||| |
|
|
| T |
5942608 |
ttcccaccttcttctcttatcacaaccctctcatcaataggcttaggtacttcctctacttttaaatacatagaaggcaaagtaaactgcatagtcacca |
5942509 |
T |
|
| Q |
377 |
tcttgttcctctca |
390 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
5942508 |
tcttgttcttctca |
5942495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University