View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19026_high_12 (Length: 416)
Name: NF19026_high_12
Description: NF19026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19026_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 16 - 367
Target Start/End: Original strand, 8309722 - 8310077
Alignment:
| Q |
16 |
catacaagataatctagcaaaacgcacgaaagcattgatattaatcataaatgagaatat----gaagatgttactgacttgagatagatccgcgcttga |
111 |
Q |
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| T |
8309722 |
catacaagataatctagcaaaacgcgcgaaagcattgatattaatcataaatgagaatatatatgaagatgttactgacttgagatagatccgcgcttga |
8309821 |
T |
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| Q |
112 |
aataaatccgaataaagttttcgagacacttcactctaacctccattgattccatatcagctctcattgcctccacgttctcatttgaaatctgaatatc |
211 |
Q |
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| T |
8309822 |
gataaatccgaataaagttttcgagacacttcactctaacctccattgattccatatcagctctcattgcctccacgttctcatttgaaatctcaatatc |
8309921 |
T |
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| Q |
212 |
atcaagcaacttaacaaccggcctaatgtttctgataaatcccaatgccgtataaatcttaatgatcatagcagcattgtttatcgcccattgatccact |
311 |
Q |
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| T |
8309922 |
atcaagcaacttaacaaccggcctaatgtttctgataaatcccaatgccgtataaatcttaatgatcatagcagcattgtttatcgcccattgatccact |
8310021 |
T |
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| Q |
312 |
tcttcttcatcaagattatcccgctcagccaaccatttcaccataaattgtttctc |
367 |
Q |
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| T |
8310022 |
tcttcttcatcaagattatcccgctcagccaaccatttcaccataaattgtttctc |
8310077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 89 - 217
Target Start/End: Original strand, 27662814 - 27662942
Alignment:
| Q |
89 |
acttgagatagatccgcgcttgaaataaatccgaataaagttttcgagacacttcactctaacctccattgattccatatcagctctcattgcctccacg |
188 |
Q |
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| T |
27662814 |
acttgagatagatccgcacttaaggtaaatccgtataaagctttccagacccttcaccctttcctccatagattccacatcaactctcattgcctccacg |
27662913 |
T |
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| Q |
189 |
ttctcatttgaaatctgaatatcatcaag |
217 |
Q |
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| T |
27662914 |
ttgccatttgaaatctgtatatcatcaag |
27662942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 367
Target Start/End: Original strand, 27662957 - 27663044
Alignment:
| Q |
280 |
tagcagcattgtttatcgcccattgatccacttcttcttcatcaagattatcccgctcagccaaccatttcaccataaattgtttctc |
367 |
Q |
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|||| |||||||||||||||||| | | | |||||||||||||| ||||| |||||||| |||| | |||| ||||||||||||||| |
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| T |
27662957 |
tagctgcattgtttatcgcccatcgtttcctttcttcttcatcaaaattattccgctcaggcaacaagttcatcataaattgtttctc |
27663044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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