View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19026_high_16 (Length: 378)
Name: NF19026_high_16
Description: NF19026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19026_high_16 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 3 - 378
Target Start/End: Complemental strand, 33633583 - 33633207
Alignment:
| Q |
3 |
atcatgccaaaggaatatttttaatgtaatccgcaatgagatgattggaaacaacatgcttagattaacccaaatggaatagtaactttgagaattctat |
102 |
Q |
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| T |
33633583 |
atcatgccaaaggaatatttttaatgtaatccgcaatgagatgattggaaacaacatgcttagattaacccaaatggaatagtaactttgagtgttctat |
33633484 |
T |
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| Q |
103 |
gatgggatttagggcagatgtaacgnnnnnnnn-ctgtttattattacaacattgtccttactacaccaaagattatcattcgcatggactctaccaaca |
201 |
Q |
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| T |
33633483 |
gacgggatttagggcagatgtaacgtttttttttctgtttattattacaacattgtccttactacaccaaagattatcattcgcatggactctactaaca |
33633384 |
T |
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| Q |
202 |
atttatttattttttgacaaaactctaataacatattgtttatcccgtttaacaatgtgcattgttaattggattatatatggacgtaagtgtagtatta |
301 |
Q |
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|||||||||||||||||||||||||||||||||| |||| || ||| ||||||||| ||||| | |||||||||||||||| |||||||||||| ||||| |
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| T |
33633383 |
atttatttattttttgacaaaactctaataacattttgtgtagcccttttaacaatttgcatggataattggattatatatagacgtaagtgtattatta |
33633284 |
T |
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| Q |
302 |
tacagattgagacagagtcgaaagcatcagagaaggtatttgaatctacagtaataaattgatcactagtcatttta |
378 |
Q |
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||| |||||||| ||| | |||||||||||| ||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
33633283 |
tactgattgagaaagattttaaagcatcagaggtggtatttgaatctacagaattaaattgatcactagtcatttta |
33633207 |
T |
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