View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19026_high_19 (Length: 306)
Name: NF19026_high_19
Description: NF19026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19026_high_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 78 - 298
Target Start/End: Complemental strand, 44955948 - 44955728
Alignment:
| Q |
78 |
ctaaagattatgcattcttgttattattaagttttagaatctaataataacacctacttactaaaataatgaggaacatacgtgttgatgaaattgaaaa |
177 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44955948 |
ctaaagattatgcattcttcttattattaagttttagaatctaataataacacctacttactaaaataataaggaacatacgtgttgatgaaattgaaaa |
44955849 |
T |
|
| Q |
178 |
ttagtagagaagggggaaagtaggattaggatattcctttccactataaatttgttgtgcacactatgattcgaaagccaactttatttatgaagatcat |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44955848 |
ttagtagagaagggggaaagtaggattaggatattcctttccactataaatttgttgtgcacactatgattcgaaagccaactttatttatgaagatcat |
44955749 |
T |
|
| Q |
278 |
atatcaattgcatgagtataa |
298 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
44955748 |
atatcaattgcatgagtataa |
44955728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University