View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19026_high_22 (Length: 292)

Name: NF19026_high_22
Description: NF19026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19026_high_22
NF19026_high_22
[»] chr3 (15 HSPs)
chr3 (1-275)||(22457152-22457426)
chr3 (1-275)||(22480133-22480407)
chr3 (1-128)||(22629232-22629359)
chr3 (1-244)||(22366597-22366840)
chr3 (1-122)||(22441540-22441661)
chr3 (1-122)||(22352605-22352726)
chr3 (10-122)||(22356785-22356897)
chr3 (10-181)||(22634194-22634365)
chr3 (1-123)||(22466742-22466864)
chr3 (11-122)||(22430008-22430119)
chr3 (1-65)||(37929608-37929672)
chr3 (1-106)||(22435442-22435547)
chr3 (205-257)||(22613937-22613989)
chr3 (221-266)||(22352488-22352533)
chr3 (221-265)||(22356627-22356671)


Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 22457426 - 22457152
Alignment:
Q  1 agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22457426 agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagcggatacatgagtgctatatcttcctcaatcaatga 22457327  T
Q  101 gatgcaaaaaatggagaaactacaaattcgcgcaaacggatatggcacagttattgacatgcatttgaattcaccaccacctatgcttcgacatcttact 200  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22457326 gatgcaaaaagtggagaaactacaaattcgcgcaaacggatatgacacagttattgacatgcatttgaattcaccaccacctatgcttcgacatcttact 22457227  T
Q  201 cttgatgggaagttagagatgttgcctgtgtggattccaaaacttcaaaatcttgttaagctgaaactcaagtat 275  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22457226 cttgatgggaagttagagatgttgcctctgtggattccaaaacttcaaaatcttgttaagctgaaactcaagtat 22457152  T

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Target: chr3; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 22480407 - 22480133
Alignment:
Q  1 agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22480407 agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagcggatacatgagtgctatatcttcctcaatcaatga 22480308  T
Q  101 gatgcaaaaaatggagaaactacaaattcgcgcaaacggatatggcacagttattgacatgcatttgaattcaccaccacctatgcttcgacatcttact 200  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22480307 gatgcaaaaagtggagaaactacaaattcgcgcaaacggatatgacacagttattgacatgcatttgaattcaccaccacctatgcttcgacatcttact 22480208  T
Q  201 cttgatgggaagttagagatgttgcctgtgtggattccaaaacttcaaaatcttgttaagctgaaactcaagtat 275  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22480207 cttgatgggaagttagagatgttgcctctgtggattccaaaacttcaaaatcttgttaagctgaaactcaagtat 22480133  T

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Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 22629359 - 22629232
Alignment:
Q  1 agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatga 100  Q
    |||||||| |||| |||||||| ||||| || |||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||||||||||||| |    
T  22629359 agctaatcgaagatctaggaaagctaaatcagctaagggaattggtcttgctcggtgttaggagtaaatatatgagtgctatatcttcctcaatcaataa 22629260  T
Q  101 gatgcaaaaaatggagaaactacaaatt 128  Q
    ||||||| || |||||||||||||||||    
T  22629259 gatgcaacaattggagaaactacaaatt 22629232  T

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Target: chr3; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 22366840 - 22366597
Alignment:
Q  1 agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatga 100  Q
    |||||||  |||||||||||||||||||||| ||||||||||||| ||||  |||||||||||||  ||| ||||||||||||||||| ||||||||| |    
T  22366840 agctaattgaagagctaggaaaactaaagcagctaagggaattgggcttggccggtgttaggagtaaatatatgagtgctatatcttcttcaatcaataa 22366741  T
Q  101 gatgcaaaaaatggagaaactacaaattcgcgcaaacggatatggcacagttattgacatgcatttgaattcaccaccacctatgcttcgacatcttact 200  Q
    ||||||| || ||||||||||| | ||| | | |  || |||||  ||| | |||||  || ||||||||||||| ||||||||||||| |||| ||       
T  22366740 gatgcaacaactggagaaactaaatattagtggagtcgaatatgagacattcattgatctggatttgaattcacccccacctatgcttcaacatattgga 22366641  T
Q  201 cttgatgggaagttagagatgttgcctgtgtggattccaaaact 244  Q
    ||  | ||||| ||| ||| ||| |||| |||||||||||||||    
T  22366640 ctctacgggaatttaaagaagtttcctgagtggattccaaaact 22366597  T

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Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 22441661 - 22441540
Alignment:
Q  1 agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatga 100  Q
    |||||||||||||||||||||| ||||| || |||||| |||||| ||||| |||||||||||||  ||| |||||||||||||||| ||||||||| ||    
T  22441661 agctaatccaagagctaggaaagctaaaacagctaaggaaattgggcttgaccggtgttaggagtaaatatatgagtgctatatctttctcaatcaacga 22441562  T
Q  101 gatgcaaaaaatggagaaacta 122  Q
    ||||||| || |||||||||||    
T  22441561 gatgcaacaattggagaaacta 22441540  T

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Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 22352726 - 22352605
Alignment:
Q  1 agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatga 100  Q
    |||||||  ||||||||||||| ||||| || |||||||| |||||||||  |||||||||||||  ||| ||||||||| ||||||||||||||||| |    
T  22352726 agctaattgaagagctaggaaagctaaatcagctaagggagttggtcttgtacggtgttaggagtaaatatatgagtgctctatcttcctcaatcaatca 22352627  T
Q  101 gatgcaaaaaatggagaaacta 122  Q
    |||||||||| |||||||||||    
T  22352626 gatgcaaaaattggagaaacta 22352605  T

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Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 22356897 - 22356785
Alignment:
Q  10 aagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatgagatgcaaaa 109  Q
    ||||||| |||||||||||||| || |||||||||  ||||| |||| ||| ||||  ||| ||||||| ||||||||||||||||||||||||||||||    
T  22356897 aagagctgggaaaactaaagcagcttagggaattgagcttgagcggtcttaagagtaaatatatgagtggtatatcttcctcaatcaatgagatgcaaaa 22356798  T
Q  110 aatggagaaacta 122  Q
    | |||||||||||    
T  22356797 attggagaaacta 22356785  T

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Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 22634365 - 22634194
Alignment:
Q  10 aagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatgagatgcaaaa 109  Q
    ||||||||||||| |||||||| || ||||||||   |||| ||||||||||||||  ||| ||||||||||||||||||||||||||  |||||||| |    
T  22634365 aagagctaggaaagctaaagcagcttagggaattaagcttggtcggtgttaggagtaaatatatgagtgctatatcttcctcaatcaacaagatgcaaca 22634266  T
Q  110 aatggagaaactacaaattcgcgcaaacggatatggcacagttattgacatgcatttgaattcaccaccacc 181  Q
    | ||||||||||| | ||| | | || | |||||  |||| | ||||| ||| ||||||||||||| |||||    
T  22634265 attggagaaactaaatattagaggaatcagatataacacattcattgatatggatttgaattcacccccacc 22634194  T

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Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 22466864 - 22466742
Alignment:
Q  1 agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatga 100  Q
    ||||||| |||||||||||||| |||||  |  ||||  |||||  |||||| ||||||||||||  ||| ||||||||||||||||||||||||||| |    
T  22466864 agctaattcaagagctaggaaagctaaataagataagaaaattgagcttgataggtgttaggagtaaatatatgagtgctatatcttcctcaatcaatca 22466765  T
Q  101 gatgcaaaaaatggagaaactac 123  Q
     |||||| |||||||||||||||    
T  22466764 aatgcaacaaatggagaaactac 22466742  T

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Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 22430119 - 22430008
Alignment:
Q  11 agagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatgagatgcaaaaa 110  Q
    |||||||||||| ||||| || ||||||||||||| ||||  ||||||| |||||  ||| ||||||||| ||| ||||||||||||| |||||||  ||    
T  22430119 agagctaggaaagctaaatcagctaagggaattgggcttggccggtgtttggagtaaatatatgagtgctttatgttcctcaatcaatcagatgcacgaa 22430020  T
Q  111 atggagaaacta 122  Q
     |||||||||||    
T  22430019 ttggagaaacta 22430008  T

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Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 37929672 - 37929608
Alignment:
Q  1 agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagt 65  Q
    |||||||||||||||||||||| ||||| || ||||||||||||| ||||  |||||||||||||    
T  37929672 agctaatccaagagctaggaaagctaaaacagctaagggaattgggcttggccggtgttaggagt 37929608  T

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Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 22435547 - 22435442
Alignment:
Q  1 agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatga 100  Q
    ||||||||  |||||||||||| ||||  || || |||||||||| |||| | | ||||||  ||  ||| ||||||||||||||||||||||||||| |    
T  22435547 agctaatcatagagctaggaaagctaacacagcttagggaattgggcttggttgttgttagtggtaaatatatgagtgctatatcttcctcaatcaataa 22435448  T
Q  101 gatgca 106  Q
    ||||||    
T  22435447 gatgca 22435442  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 22613989 - 22613937
Alignment:
Q  205 atgggaagttagagatgttgcctgtgtggattccaaaacttcaaaatcttgtt 257  Q
    ||||||||||||||| |||||| | |||||||||||| || ||||||||||||    
T  22613989 atgggaagttagagaagttgccagagtggattccaaagctacaaaatcttgtt 22613937  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 22352533 - 22352488
Alignment:
Q  221 gttgcctgtgtggattccaaaacttcaaaatcttgttaagctgaaa 266  Q
    |||||||| ||||||| ||||||| || ||||||||||||||||||    
T  22352533 gttgcctgagtggatttcaaaactccagaatcttgttaagctgaaa 22352488  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 22356671 - 22356627
Alignment:
Q  221 gttgcctgtgtggattccaaaacttcaaaatcttgttaagctgaa 265  Q
    |||||||| ||||||| ||||||| ||||||||||| ||||||||    
T  22356671 gttgcctgagtggatttcaaaactccaaaatcttgtcaagctgaa 22356627  T

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