View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19026_high_25 (Length: 250)
Name: NF19026_high_25
Description: NF19026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19026_high_25 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 42768546 - 42768788
Alignment:
| Q |
8 |
ccaagaaaatggtggtaagatttccaatacttcctaaacttgttcgtagtatttggcctaaacaacaatgccaaagtctgcaaagctccgaggcaaaaca |
107 |
Q |
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| T |
42768546 |
ccaacaaaatggtggtaagatttccaatacttcctaaacttgttcgtagtatttggcctaaacaacaatgccaaagtctgcaaagctccgaggcaaaaca |
42768645 |
T |
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| Q |
108 |
ccgctattccgagcttcctgtggagtccgtactcaactcctggcgtcattttcccgagttgaataccaataccaaacccaacggttccaagaataaaacc |
207 |
Q |
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| T |
42768646 |
ccgctattccgagcttcctgtggagtccgtactcaactcctggcgtcattttcccgagttgaataccaataccaaacccaacggttccaagaataaaacc |
42768745 |
T |
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| Q |
208 |
aaacatttgtattcctgcatgagcatagaaccatgaagggcct |
250 |
Q |
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| T |
42768746 |
aaacatttgtattcctgcatgagcatagaaccatgaagggcct |
42768788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 2452976 - 2452742
Alignment:
| Q |
8 |
ccaagaaaatggtggtaagatttccaatacttcctaaacttgttcgtagtatttggcctaaacaacaatgccaaagtctgcaaagctccgaggcaaaaca |
107 |
Q |
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| T |
2452976 |
ccaacaaagtggtggtaggatttccaatacttcctgaacttgttcctagcgtttggcctaaacaacaacgctaaagtctgcaaggctccaaggcaaaaca |
2452877 |
T |
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| Q |
108 |
ccgctattccgagcttcctgtggagtccgtactcaactcctggcgtcattttcccgagttgaataccaataccaaacccaacggttccaagaataaaacc |
207 |
Q |
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| T |
2452876 |
cggcgactccaagcttcctgtggaggctatactccactcctggagacaactgcccaaggtgaatgccaattgcgaaccccacagttccaagaatgaaagc |
2452777 |
T |
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| Q |
208 |
aaacatttgtattcctgcatgagcatagaaccatg |
242 |
Q |
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| T |
2452776 |
aaacaattgtattcctgcatgagcatagaaccatg |
2452742 |
T |
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