View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19026_high_30 (Length: 239)
Name: NF19026_high_30
Description: NF19026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19026_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 10818731 - 10818947
Alignment:
| Q |
16 |
cctaagccatgcaaactctacacaacacaaatgaacaatcatttcaaaatcaagcatagaattgaattcagggaaatgcttgttcaattagccttaaacc |
115 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10818731 |
cctaagccatgcaaacactacacaacacaaatgaacaatcatttcaaaatcaaacatagaattgaattcagggaaatgcttgttcaattagccttaaacc |
10818830 |
T |
|
| Q |
116 |
aagctcttaccatgcaaaaagaagcacaagaaaattctcaacaacaaaactcatcagtgcataaaacagttcatggtgattgtttgaagctatttgaaaa |
215 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
10818831 |
aagctcttaccatgcaaaaagaagcacatgaaaattctcaacaacaaaactcatcggtgcataaaacggttcatggtgattgtttgaagctatatgaaaa |
10818930 |
T |
|
| Q |
216 |
cacaatttttcatctca |
232 |
Q |
| |
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|||||||||||||||| |
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| T |
10818931 |
tacaatttttcatctca |
10818947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 1608321 - 1608105
Alignment:
| Q |
19 |
aagccatgcaaactctacacaacacaaatgaacaatcatttcaaaatcaagcatagaattgaattcagggaaatgcttgttcaattagccttaaaccaag |
118 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1608321 |
aagccatgcaaacactacacaacacaaatgaacaatcatttcaaaatcaaacatagagttgaattcagggaaatgcttgttcaattagccttaaaacaag |
1608222 |
T |
|
| Q |
119 |
ctcttaccatgcaaaaagaagcacaagaaaattctcaaca---acaaaactcatcagtgcataaaacagttcatggtgattgtttgaagctatttgaaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1608221 |
ctcttaccatgcaaaaagaagcacaagaaaattctcaacaacaacaaaactcatttgtgcataaaacggttcatggtgattgtttgaagctatttgaaaa |
1608122 |
T |
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| Q |
216 |
cacaatttttcatctca |
232 |
Q |
| |
|
||||||||||||||||| |
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| T |
1608121 |
cacaatttttcatctca |
1608105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 1625331 - 1625112
Alignment:
| Q |
16 |
cctaagccatgcaaactctacacaacacaaatgaacaatcatttcaaaatcaagcatagaattgaattcagggaaatgcttgttcaattagccttaaacc |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
1625331 |
cctaagccatgcaaacactacacaacacaaatgaacaatcatttcaaaatcaaacatagagttgaattcagggaaatgcttgttcaattagccttaaaac |
1625232 |
T |
|
| Q |
116 |
aagctcttaccatgcaaaaagaagcacaagaaaattctcaaca---acaaaactcatcagtgcataaaacagttcatggtgattgtttgaagctatttga |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |
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| T |
1625231 |
aagctcttaccatgcaaaaagaagcacaagacaattctcaacaacaacaaaactcatcggtgcataaaacggttcatggtgattgtttgaagctagttga |
1625132 |
T |
|
| Q |
213 |
aaacacaatttttcatctca |
232 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
1625131 |
aaacacaatttttcatctca |
1625112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 1631811 - 1631595
Alignment:
| Q |
19 |
aagccatgcaaactctacacaacacaaatgaacaatcatttcaaaatcaagcatagaattgaattcagggaaatgcttgttcaattagccttaaaccaag |
118 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1631811 |
aagccatgcaaacactacacaacacaaatgaacaatcatttcaaaatcaaacatagagttgaattcagggaaatgcttgttcaattagccttaaaacaag |
1631712 |
T |
|
| Q |
119 |
ctcttaccatgcaaaaagaagcacaagaaaattctcaaca---acaaaactcatcagtgcataaaacagttcatggtgattgtttgaagctatttgaaaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
1631711 |
ctcttaccatgcaaaaagaagcacaagcaaattctcaacaacaacaaaactcattggtgcataaaacggttcatggtgattgtttgaagctatttgaaaa |
1631612 |
T |
|
| Q |
216 |
cacaatttttcatctca |
232 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
1631611 |
cacaatttttcatctca |
1631595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 18786272 - 18786053
Alignment:
| Q |
16 |
cctaagccatgcaaactctacacaacacaaatgaacaatcatttcaaaatcaagcatagaattgaattcagggaaatgcttgttcaattagccttaaacc |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
18786272 |
cctaagccatgcaaacactacacaacacaaatgaacaatcacttcaaaatcaaacatagagttgaattcagggaaatgcttgttaaattagccttaaacc |
18786173 |
T |
|
| Q |
116 |
aagctcttaccatgcaaaaagaagcacaagaaaattctcaaca---acaaaactcatcagtgcataaaacagttcatggtgattgtttgaagctatttga |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| ||||||| ||||||||| ||||||||||| |
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|
| T |
18786172 |
aagctcttaccatgcaaaaagaagcacaagataattctcaacaacaacaaaactcatccgtgcataaaacggttcatgctgattgtttcaagctatttga |
18786073 |
T |
|
| Q |
213 |
aaacacaatttttcatctca |
232 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
18786072 |
aaacacaatttttcatctca |
18786053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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