View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19026_high_8 (Length: 465)

Name: NF19026_high_8
Description: NF19026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19026_high_8
NF19026_high_8
[»] chr8 (30 HSPs)
chr8 (1-47)||(2229139-2229185)
chr8 (1-47)||(43135077-43135123)
chr8 (1-47)||(2339323-2339369)
chr8 (1-47)||(22781915-22781961)
chr8 (1-47)||(25848000-25848046)
chr8 (1-47)||(30923990-30924036)
chr8 (1-47)||(33642491-33642537)
chr8 (1-47)||(34028416-34028462)
chr8 (1-47)||(40465307-40465353)
chr8 (1-46)||(29563691-29563736)
chr8 (3-47)||(7668226-7668270)
chr8 (3-47)||(34157696-34157740)
chr8 (3-47)||(40834171-40834215)
chr8 (1-47)||(12270125-12270171)
chr8 (1-47)||(27793230-27793276)
chr8 (1-47)||(32159103-32159149)
chr8 (1-47)||(43295132-43295178)
chr8 (1-47)||(45145902-45145948)
chr8 (1-46)||(37564701-37564746)
chr8 (3-47)||(29916563-29916607)
chr8 (1-47)||(41569165-41569211)
chr8 (1-47)||(42189836-42189882)
chr8 (3-40)||(41915629-41915666)
chr8 (3-47)||(3799785-3799829)
chr8 (3-47)||(42351267-42351311)
chr8 (5-40)||(10396868-10396903)
chr8 (4-47)||(25878241-25878284)
chr8 (1-47)||(8242256-8242302)
chr8 (1-47)||(33837613-33837659)
chr8 (1-33)||(25848050-25848082)
[»] chr5 (31 HSPs)
chr5 (1-47)||(25027727-25027773)
chr5 (1-47)||(29374203-29374249)
chr5 (1-47)||(37699849-37699895)
chr5 (1-47)||(904035-904081)
chr5 (1-47)||(6338384-6338430)
chr5 (1-47)||(13144913-13144959)
chr5 (1-47)||(23411198-23411244)
chr5 (1-47)||(41989597-41989643)
chr5 (3-46)||(2825895-2825938)
chr5 (1-47)||(15569400-15569446)
chr5 (1-47)||(18353277-18353323)
chr5 (1-47)||(21610370-21610416)
chr5 (1-47)||(26898224-26898270)
chr5 (1-43)||(31803031-31803073)
chr5 (1-47)||(36417116-36417162)
chr5 (1-47)||(41046861-41046907)
chr5 (3-47)||(7749953-7749997)
chr5 (1-47)||(1108316-1108362)
chr5 (1-47)||(1643377-1643423)
chr5 (1-47)||(7053681-7053727)
chr5 (1-47)||(7945870-7945916)
chr5 (1-43)||(20578728-20578770)
chr5 (1-47)||(36419054-36419100)
chr5 (1-47)||(41815218-41815264)
chr5 (3-44)||(16089159-16089200)
chr5 (3-47)||(6910747-6910791)
chr5 (3-39)||(42311887-42311923)
chr5 (1-40)||(9601669-9601708)
chr5 (1-31)||(14338900-14338930)
chr5 (1-47)||(21090445-21090491)
chr5 (3-39)||(14338850-14338886)
[»] chr3 (43 HSPs)
chr3 (1-47)||(6086970-6087016)
chr3 (1-47)||(10049701-10049747)
chr3 (1-47)||(335444-335490)
chr3 (1-47)||(8243751-8243797)
chr3 (1-47)||(9440197-9440243)
chr3 (1-47)||(14768131-14768177)
chr3 (1-47)||(19202319-19202365)
chr3 (1-47)||(26999054-26999100)
chr3 (1-47)||(47449949-47449995)
chr3 (1-46)||(28945689-28945734)
chr3 (1-46)||(52114094-52114139)
chr3 (4-47)||(29019771-29019814)
chr3 (1-47)||(18765327-18765373)
chr3 (1-47)||(21653413-21653459)
chr3 (1-47)||(25113418-25113464)
chr3 (1-47)||(25846580-25846626)
chr3 (1-47)||(40464555-40464601)
chr3 (1-47)||(49122977-49123023)
chr3 (1-44)||(51698186-51698229)
chr3 (1-47)||(1122308-1122354)
chr3 (1-47)||(8825764-8825810)
chr3 (1-39)||(8987806-8987844)
chr3 (1-47)||(9465140-9465186)
chr3 (1-47)||(23825182-23825228)
chr3 (1-39)||(40141951-40141989)
chr3 (1-47)||(40214969-40215015)
chr3 (1-39)||(55139206-55139244)
chr3 (3-40)||(379105-379142)
chr3 (3-47)||(3484367-3484411)
chr3 (3-47)||(28565004-28565048)
chr3 (3-39)||(44593278-44593314)
chr3 (3-46)||(22003831-22003874)
chr3 (3-46)||(22011348-22011391)
chr3 (1-36)||(55139253-55139288)
chr3 (1-31)||(379158-379188)
chr3 (1-39)||(9190061-9190099)
chr3 (1-31)||(22003881-22003911)
chr3 (1-31)||(22011398-22011428)
chr3 (1-43)||(42225635-42225677)
chr3 (1-47)||(42605896-42605942)
chr3 (1-43)||(16660353-16660397)
chr3 (3-36)||(48593222-48593255)
chr3 (1-33)||(25113382-25113414)
[»] chr2 (34 HSPs)
chr2 (1-47)||(16241336-16241382)
chr2 (1-47)||(25892013-25892059)
chr2 (1-47)||(6761498-6761544)
chr2 (1-47)||(11363067-11363113)
chr2 (1-47)||(18452602-18452648)
chr2 (1-47)||(29866115-29866161)
chr2 (1-47)||(40430735-40430781)
chr2 (1-47)||(42263539-42263585)
chr2 (3-47)||(2100052-2100096)
chr2 (1-47)||(30864744-30864790)
chr2 (1-47)||(32880940-32880986)
chr2 (1-47)||(41260058-41260104)
chr2 (1-43)||(43657998-43658040)
chr2 (3-47)||(32197411-32197455)
chr2 (1-37)||(44737361-44737397)
chr2 (1-36)||(27596729-27596764)
chr2 (1-47)||(1944603-1944649)
chr2 (1-47)||(7765863-7765909)
chr2 (1-43)||(13775744-13775786)
chr2 (1-47)||(20427034-20427080)
chr2 (3-45)||(22857875-22857917)
chr2 (1-47)||(38598489-38598535)
chr2 (1-47)||(42341651-42341697)
chr2 (3-40)||(27182110-27182147)
chr2 (3-40)||(27831652-27831689)
chr2 (1-47)||(11711393-11711439)
chr2 (1-31)||(22857837-22857867)
chr2 (1-47)||(32750411-32750457)
chr2 (1-39)||(39377869-39377907)
chr2 (3-36)||(3037805-3037838)
chr2 (5-45)||(33913188-33913228)
chr2 (3-39)||(41205567-41205603)
chr2 (3-31)||(43068561-43068589)
chr2 (1-33)||(45065663-45065695)
[»] chr1 (28 HSPs)
chr1 (1-47)||(14281623-14281669)
chr1 (1-47)||(23398113-23398159)
chr1 (1-47)||(38830516-38830562)
chr1 (1-47)||(9301988-9302034)
chr1 (3-47)||(1674041-1674085)
chr1 (1-44)||(2961176-2961219)
chr1 (1-44)||(10380462-10380505)
chr1 (1-47)||(2352342-2352388)
chr1 (1-47)||(9548705-9548751)
chr1 (1-47)||(10065324-10065370)
chr1 (1-47)||(24594987-24595033)
chr1 (1-47)||(28359140-28359186)
chr1 (1-47)||(28989305-28989351)
chr1 (1-47)||(29312472-29312518)
chr1 (1-43)||(40161246-40161288)
chr1 (1-47)||(45536232-45536278)
chr1 (3-47)||(7796159-7796203)
chr1 (3-47)||(23537390-23537434)
chr1 (1-47)||(26545030-26545076)
chr1 (1-47)||(30264843-30264889)
chr1 (1-46)||(26550357-26550402)
chr1 (3-40)||(34718926-34718963)
chr1 (3-43)||(15289808-15289848)
chr1 (1-47)||(6784692-6784738)
chr1 (1-39)||(26733818-26733856)
chr1 (1-39)||(46320226-46320264)
chr1 (3-40)||(33325368-33325405)
chr1 (3-47)||(24463324-24463368)
[»] chr4 (39 HSPs)
chr4 (1-46)||(53621398-53621443)
chr4 (1-47)||(6246641-6246687)
chr4 (1-47)||(7350275-7350321)
chr4 (1-47)||(18135382-18135428)
chr4 (1-47)||(23125679-23125725)
chr4 (1-47)||(31227304-31227350)
chr4 (1-47)||(35328972-35329018)
chr4 (1-47)||(36099520-36099566)
chr4 (1-47)||(38687980-38688026)
chr4 (1-47)||(47948972-47949018)
chr4 (1-46)||(49122590-49122635)
chr4 (7-47)||(20688455-20688495)
chr4 (3-47)||(51833047-51833091)
chr4 (1-44)||(2279557-2279600)
chr4 (1-47)||(5970348-5970394)
chr4 (1-47)||(15170952-15170998)
chr4 (1-47)||(18430324-18430370)
chr4 (1-47)||(19485605-19485651)
chr4 (1-43)||(21221150-21221192)
chr4 (1-43)||(31854452-31854494)
chr4 (1-43)||(39877436-39877478)
chr4 (1-46)||(4758847-4758892)
chr4 (3-43)||(580484-580524)
chr4 (5-40)||(20114096-20114131)
chr4 (1-47)||(2411909-2411955)
chr4 (3-45)||(4698658-4698700)
chr4 (5-47)||(21229262-21229304)
chr4 (1-47)||(27006538-27006584)
chr4 (3-45)||(55292183-55292225)
chr4 (1-38)||(56216267-56216304)
chr4 (3-47)||(2385264-2385308)
chr4 (3-39)||(3085949-3085985)
chr4 (3-47)||(39834309-39834353)
chr4 (3-47)||(53303771-53303815)
chr4 (1-37)||(54612007-54612043)
chr4 (1-40)||(44200048-44200087)
chr4 (1-43)||(52536024-52536066)
chr4 (3-36)||(4698703-4698736)
chr4 (1-33)||(56216317-56216349)
[»] scaffold0144 (1 HSPs)
scaffold0144 (1-47)||(38858-38904)
[»] scaffold0123 (1 HSPs)
scaffold0123 (1-47)||(29277-29323)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-47)||(492374-492420)
[»] chr7 (24 HSPs)
chr7 (1-47)||(3411365-3411411)
chr7 (1-47)||(5909540-5909586)
chr7 (1-47)||(12763262-12763308)
chr7 (1-47)||(19979563-19979609)
chr7 (1-47)||(23248737-23248783)
chr7 (1-47)||(29770355-29770401)
chr7 (1-47)||(30866278-30866324)
chr7 (1-47)||(34281738-34281784)
chr7 (4-47)||(5347792-5347835)
chr7 (3-52)||(12085088-12085137)
chr7 (1-47)||(12426599-12426645)
chr7 (1-47)||(32050149-32050195)
chr7 (1-39)||(35427736-35427774)
chr7 (3-40)||(7107665-7107702)
chr7 (3-47)||(20397850-20397894)
chr7 (1-45)||(26563954-26563998)
chr7 (1-33)||(46449811-46449843)
chr7 (3-42)||(10599390-10599429)
chr7 (1-31)||(7107715-7107745)
chr7 (1-47)||(7463482-7463528)
chr7 (1-47)||(46680898-46680944)
chr7 (10-47)||(15074659-15074696)
chr7 (4-45)||(18672163-18672204)
chr7 (1-33)||(23248701-23248733)
[»] chr6 (19 HSPs)
chr6 (1-47)||(390874-390920)
chr6 (1-47)||(885671-885717)
chr6 (1-47)||(7405477-7405523)
chr6 (1-47)||(22898886-22898932)
chr6 (1-47)||(34639109-34639155)
chr6 (4-47)||(31971099-31971142)
chr6 (1-47)||(6047865-6047911)
chr6 (1-47)||(6801620-6801666)
chr6 (1-47)||(13144278-13144324)
chr6 (1-43)||(14931291-14931333)
chr6 (1-47)||(17225312-17225358)
chr6 (1-47)||(22880951-22880997)
chr6 (1-47)||(24949700-24949746)
chr6 (1-47)||(33859523-33859569)
chr6 (3-43)||(766500-766540)
chr6 (1-43)||(30686577-30686619)
chr6 (3-46)||(8558984-8559026)
chr6 (1-47)||(6045750-6045796)
chr6 (3-40)||(36392-36429)
[»] scaffold0246 (1 HSPs)
scaffold0246 (2-47)||(15189-15234)
[»] scaffold2107 (1 HSPs)
scaffold2107 (1-47)||(476-522)
[»] scaffold0221 (1 HSPs)
scaffold0221 (1-47)||(11063-11109)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-46)||(35987-36032)
[»] scaffold0007 (1 HSPs)
scaffold0007 (3-47)||(77414-77458)
[»] scaffold0592 (1 HSPs)
scaffold0592 (1-47)||(412-458)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-47)||(282733-282779)
[»] scaffold0018 (1 HSPs)
scaffold0018 (4-36)||(183828-183860)
[»] scaffold0009 (2 HSPs)
scaffold0009 (1-33)||(3664-3696)
scaffold0009 (19-47)||(3700-3728)


Alignment Details
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2229185 - 2229139
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2229185 actttttagatacattgaataatttatgtatttggtttaggttcttg 2229139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 43135077 - 43135123
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  43135077 actttttagatacattgaataatttatgtatttggtttaggttcttg 43135123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2339323 - 2339369
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  2339323 actttttagatacattaaataatttatgtatttggtttaggttcttg 2339369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 22781915 - 22781961
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  22781915 actttttagatacattaaataatttatgtatttggtttaggttcttg 22781961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 25848000 - 25848046
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  25848000 actttttagatacattaaataatttatgtatttggtttaggttcttg 25848046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 30924036 - 30923990
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  30924036 actttttagatacattaaataatttatgtatttggtttaggttcttg 30923990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 33642491 - 33642537
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  33642491 actttttagatacattaaataatttatgtatttggtttaggttcttg 33642537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 34028416 - 34028462
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  34028416 actttttagatacattaaataatttatgtatttggtttaggttcttg 34028462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 40465353 - 40465307
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  40465353 actttttagatacattaaataatttatgtatttggtttaggttcttg 40465307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 29563691 - 29563736
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttctt 46  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  29563691 actttttagatacattaaataatttatgtatttggtttaggttctt 29563736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 7668226 - 7668270
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  7668226 tttttagatacattaaataatttatgtatttggtttaggttcttg 7668270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 34157696 - 34157740
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  34157696 tttttagatacattaaataatttatgtatttggtttaggttcttg 34157740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 40834171 - 40834215
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  40834171 tttttagatacattaaataatttatgtatttggtttaggttcttg 40834215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 12270171 - 12270125
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||    
T  12270171 actttttagatacattaaataatttatgtatttggtttaagttcttg 12270125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 27793230 - 27793276
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||    
T  27793230 actttttagatgcattaaataatttatgtatttggtttaggttcttg 27793276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 32159149 - 32159103
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||    
T  32159149 actttttagatacattaaataatttatgtatttggtttagattcttg 32159103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 43295178 - 43295132
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||    
T  43295178 actttttatatacattaaataatttatgtatttggtttaggttcttg 43295132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 45145902 - 45145948
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||    
T  45145902 actttttagatacattaaataatttatgtttttggtttaggttcttg 45145948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37564746 - 37564701
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttctt 46  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||    
T  37564746 actttttaaatacattaaataatttatgtatttggtttaggttctt 37564701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 29916563 - 29916607
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||| |||||||||||||||||||||| |||||||    
T  29916563 tttttagatacattaaataatttatgtatttggtttaagttcttg 29916607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 41569211 - 41569165
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||| ||| |||||||||||||||||||| |||||||||    
T  41569211 actttttagatatattaaataatttatgtatttggttgaggttcttg 41569165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 42189836 - 42189882
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||| ||| ||| ||||||||||||||||||||||||||||||    
T  42189836 actttttaaatatattaaataatttatgtatttggtttaggttcttg 42189882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 41915629 - 41915666
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttag 40  Q
    |||||||||||||| |||||||||||||||||||||||    
T  41915629 tttttagatacattaaataatttatgtatttggtttag 41915666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 3799829 - 3799785
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||| ||||||| ||||||||||||||||||||||| ||||||    
T  3799829 tttttaaatacattaaataatttatgtatttggtttagattcttg 3799785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 42351311 - 42351267
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||| |||||||||| |||||| ||||||||||||    
T  42351311 tttttagatacattaaataatttatatatttgatttaggttcttg 42351267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 10396903 - 10396868
Alignment:
Q  5 tttagatacattgaataatttatgtatttggtttag 40  Q
    ||||||||||||||| ||||||||||||||||||||    
T  10396903 tttagatacattgaacaatttatgtatttggtttag 10396868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 25878284 - 25878241
Alignment:
Q  4 ttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||  |||||||||||||||| ||||||||||||    
T  25878284 ttttagatacattatataatttatgtatttgatttaggttcttg 25878241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 8242256 - 8242302
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||| ||||||| ||| ||||||||||||| ||||||||||||    
T  8242256 actttttaaatacattaaatgatttatgtatttgatttaggttcttg 8242302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 33837613 - 33837659
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||| |||| |||||| ||||||    
T  33837613 actttttagatacattaaataatttatgcatttagtttagattcttg 33837659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 25848082 - 25848050
Alignment:
Q  1 actttttagatacattgaataatttatgtattt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  25848082 actttttagatacattgaataatgtatgtattt 25848050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 25027727 - 25027773
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  25027727 actttttagatacattgaataatttatgtatttggtttaggttcttg 25027773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 29374203 - 29374249
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  29374203 actttttagatacattgaataatttatgtatttggtttaggttcttg 29374249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 37699895 - 37699849
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  37699895 actttttagatacattgaataatttatgtatttggtttaggttcttg 37699849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 904081 - 904035
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  904081 actttttagatacattaaataatttatgtatttggtttaggttcttg 904035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 6338430 - 6338384
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  6338430 actttttagatacattaaataatttatgtatttggtttaggttcttg 6338384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 13144913 - 13144959
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  13144913 actttttagatacattaaataatttatgtatttggtttaggttcttg 13144959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 23411198 - 23411244
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  23411198 actttttagatacattaaataatttatgtatttggtttaggttcttg 23411244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 41989597 - 41989643
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  41989597 actttttagatacattaaataatttatgtatttggtttaggttcttg 41989643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 2825895 - 2825938
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggttctt 46  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  2825895 tttttagatacattaaataatttatgtatttggtttaggttctt 2825938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 15569446 - 15569400
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||    
T  15569446 actttttagatacattaaataatttatgtatttggtttatgttcttg 15569400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 18353323 - 18353277
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||    
T  18353323 actttttagatacattaaataatttatgtatttggtttatgttcttg 18353277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21610416 - 21610370
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||    
T  21610416 actttttatatacattaaataatttatgtatttggtttaggttcttg 21610370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 26898224 - 26898270
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||    
T  26898224 actttttaaatacattaaataatttatgtatttggtttaggttcttg 26898270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 31803073 - 31803031
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggtt 43  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  31803073 actttttagatacattaaataatttatgtatttggtttaggtt 31803031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 36417162 - 36417116
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||    
T  36417162 actttttagatacattaaataatttatgtatttggattaggttcttg 36417116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 41046861 - 41046907
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||    
T  41046861 actttttagatacattaaataatttatgtatttggtttaagttcttg 41046907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 7749953 - 7749997
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||    
T  7749953 tttttagatacattaaataatttatgtatttggtttagattcttg 7749997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1108316 - 1108362
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||  |||||||||||||||| |||||||||||||    
T  1108316 actttttagatacataaaataatttatgtatttagtttaggttcttg 1108362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1643377 - 1643423
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    ||||||||||||||||||| |||||||||||||| ||||| ||||||    
T  1643377 actttttagatacattgaaaaatttatgtatttgatttagattcttg 1643423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7053681 - 7053727
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||| |||||| |||||    
T  7053681 actttttagatacattaaataatttatgtatttgatttaggctcttg 7053727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7945870 - 7945916
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| |||||||||| |||||||||||| ||||||    
T  7945870 actttttagatacattaaataatttatatatttggtttagattcttg 7945916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 20578770 - 20578728
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggtt 43  Q
    |||||||| ||||||| ||||||||||||||||||||||||||    
T  20578770 actttttatatacattaaataatttatgtatttggtttaggtt 20578728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 36419100 - 36419054
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||  |||||||||||||||| |||||||||||||    
T  36419100 actttttagatacataaaataatttatgtatttagtttaggttcttg 36419054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 41815218 - 41815264
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||| ||||||| |||||||||||||||||||| |||||||||    
T  41815218 actttttaaatacattaaataatttatgtatttggttcaggttcttg 41815264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 16089200 - 16089159
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggttc 44  Q
    |||||||||| ||| |||||||||||||||||||||||||||    
T  16089200 tttttagatatattaaataatttatgtatttggtttaggttc 16089159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 6910747 - 6910791
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||| ||||||||||||||||| ||||| ||||||    
T  6910747 tttttagatacattaaataatttatgtatttgatttagattcttg 6910791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 42311923 - 42311887
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggttta 39  Q
    |||||||||||||| ||||||||||||||||||||||    
T  42311923 tttttagatacattaaataatttatgtatttggttta 42311887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 9601708 - 9601669
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttag 40  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  9601708 actttttagatacatcaaataatttatgtatttggtttag 9601669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 14338930 - 14338900
Alignment:
Q  1 actttttagatacattgaataatttatgtat 31  Q
    |||||||||||||||||||||||||||||||    
T  14338930 actttttagatacattgaataatttatgtat 14338900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21090491 - 21090445
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||| ||||||| |||||| |||||||||||||||| ||||||    
T  21090491 actttttaaatacattaaataatgtatgtatttggtttagattcttg 21090445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 14338850 - 14338886
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggttta 39  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  14338850 tttttagataaattaaataatttatgtatttggttta 14338886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 6087016 - 6086970
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  6087016 actttttagatacattgaataatttatgtatttggtttaggttcttg 6086970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 10049701 - 10049747
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  10049701 actttttagatacattgaataatttatgtatttggtttaggttcttg 10049747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 335490 - 335444
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  335490 actttttagatacattaaataatttatgtatttggtttaggttcttg 335444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 8243797 - 8243751
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  8243797 actttttagatacattgaataatttatgtatttggtttagattcttg 8243751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 9440243 - 9440197
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  9440243 actttttagatacattgaataatttatgtatttggtttaagttcttg 9440197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 14768131 - 14768177
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  14768131 actttttagatacattaaataatttatgtatttggtttaggttcttg 14768177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 19202365 - 19202319
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  19202365 actttttagatacattaaataatttatgtatttggtttaggttcttg 19202319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 26999054 - 26999100
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  26999054 actttttagatacattaaataatttatgtatttggtttaggttcttg 26999100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 47449949 - 47449995
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  47449949 actttttagatacattaaataatttatgtatttggtttaggttcttg 47449995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 28945689 - 28945734
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttctt 46  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  28945689 actttttagatacattaaataatttatgtatttggtttaggttctt 28945734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 52114139 - 52114094
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttctt 46  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  52114139 actttttagatacattaaataatttatgtatttggtttaggttctt 52114094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 29019771 - 29019814
Alignment:
Q  4 ttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  29019771 ttttagatacattaaataatttatgtatttggtttaggttcttg 29019814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 18765373 - 18765327
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||    
T  18765373 actttttagatgcattaaataatttatgtatttggtttaggttcttg 18765327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21653459 - 21653413
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||    
T  21653459 actttttagatacattaaataatttatgcatttggtttaggttcttg 21653413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 25113464 - 25113418
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  25113464 actttttcgatacattaaataatttatgtatttggtttaggttcttg 25113418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 25846626 - 25846580
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||    
T  25846626 actttttaaatacattaaataatttatgtatttggtttaggttcttg 25846580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 40464555 - 40464601
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||    
T  40464555 actttttagataaattaaataatttatgtatttggtttaggttcttg 40464601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 49122977 - 49123023
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||    
T  49122977 actttttagatacattaaataatttatgtatttggtttaggctcttg 49123023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 51698229 - 51698186
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttc 44  Q
    |||||||||||||||| |||||||||||||||||||||| ||||    
T  51698229 actttttagatacattaaataatttatgtatttggtttatgttc 51698186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1122308 - 1122354
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||  ||||||||||||    
T  1122308 actttttagatacattaaataatttatgtatttattttaggttcttg 1122354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 8825764 - 8825810
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||| ||| |||||||||||||||||||||| |||||||    
T  8825764 actttttagatatattaaataatttatgtatttggtttaagttcttg 8825810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 8987844 - 8987806
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggttta 39  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  8987844 actttttagatacattcaataatttatgtatttggttta 8987806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 9465186 - 9465140
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||  ||||||||||||||||| ||||||||||||    
T  9465186 actttttagatacataaaataatttatgtatttgatttaggttcttg 9465140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 23825182 - 23825228
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||  ||||||||||||||||||||||| ||||||    
T  23825182 actttttagatacatcaaataatttatgtatttggtttagattcttg 23825228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 40141989 - 40141951
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggttta 39  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  40141989 actttttagatacattaaataatttatgtatttggttta 40141951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 40215015 - 40214969
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||| ||||| ||||||    
T  40215015 actttttagatacattaaataatttatgtatttgatttagattcttg 40214969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 55139206 - 55139244
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggttta 39  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  55139206 actttttagatacattgaataatttatgtatttgtttta 55139244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 379105 - 379142
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttag 40  Q
    |||||||||||||| |||||||||||||||||||||||    
T  379105 tttttagatacattaaataatttatgtatttggtttag 379142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 3484367 - 3484411
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||| |||| |||||||||||||||||| ||||||    
T  3484367 tttttagatacattaaatagtttatgtatttggtttagattcttg 3484411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 28565048 - 28565004
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||||    
T  28565048 tttttagatgcattaaataatttatgtatttggtttagattcttg 28565004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 44593314 - 44593278
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggttta 39  Q
    |||||||||||||| ||||||||||||||||||||||    
T  44593314 tttttagatacattaaataatttatgtatttggttta 44593278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 22003831 - 22003874
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggttctt 46  Q
    ||||||||||||||||||||||||| ||||| |||||| |||||    
T  22003831 tttttagatacattgaataatttatatatttagtttagattctt 22003874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 22011348 - 22011391
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggttctt 46  Q
    ||||||||||||||||||||||||| ||||| |||||| |||||    
T  22011348 tttttagatacattgaataatttatatatttagtttagattctt 22011391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 55139288 - 55139253
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggt 36  Q
    |||||||||||| |||||||||||||||||||||||    
T  55139288 actttttagatatattgaataatttatgtatttggt 55139253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 379188 - 379158
Alignment:
Q  1 actttttagatacattgaataatttatgtat 31  Q
    |||||||||||||||||||||||||||||||    
T  379188 actttttagatacattgaataatttatgtat 379158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 9190061 - 9190099
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggttta 39  Q
    |||||| ||||||||| ||||||||||||||||||||||    
T  9190061 acttttaagatacattaaataatttatgtatttggttta 9190099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 22003911 - 22003881
Alignment:
Q  1 actttttagatacattgaataatttatgtat 31  Q
    |||||||||||||||||||||||||||||||    
T  22003911 actttttagatacattgaataatttatgtat 22003881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 22011428 - 22011398
Alignment:
Q  1 actttttagatacattgaataatttatgtat 31  Q
    |||||||||||||||||||||||||||||||    
T  22011428 actttttagatacattgaataatttatgtat 22011398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 42225677 - 42225635
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggtt 43  Q
    ||||||| |||||||| |||||||||||||||| |||||||||    
T  42225677 acttttttgatacattaaataatttatgtatttagtttaggtt 42225635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 42605942 - 42605896
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||  |||||||||||||||| ||||| |||||||    
T  42605942 actttttagatacataaaataatttatgtatttagtttaagttcttg 42605896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 16660397 - 16660353
Alignment:
Q  1 actttttagatacattgaataa--tttatgtatttggtttaggtt 43  Q
    |||||||||||||||| |||||  |||||||||||||||||||||    
T  16660397 actttttagatacattaaataaaatttatgtatttggtttaggtt 16660353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 48593255 - 48593222
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggt 36  Q
    ||||||||| ||||||||||||||||||||||||    
T  48593255 tttttagattcattgaataatttatgtatttggt 48593222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 25113382 - 25113414
Alignment:
Q  1 actttttagatacattgaataatttatgtattt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  25113382 actttttagatacattgaataatgtatgtattt 25113414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 16241382 - 16241336
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  16241382 actttttagatacattgaataatttatgtatttggtttaggttcttg 16241336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 25892059 - 25892013
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  25892059 actttttagatacattgaataatttatgtatttggtttaggttcttg 25892013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 6761498 - 6761544
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  6761498 actttttagatacattgaataatttatgtatttggtttatgttcttg 6761544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 11363113 - 11363067
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  11363113 actttttagatacattaaataatttatgtatttggtttaggttcttg 11363067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 18452602 - 18452648
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  18452602 actttttagatacattgaataatttatgtatttggtttaagttcttg 18452648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 29866115 - 29866161
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  29866115 actttttagatacattaaataatttatgtatttggtttaggttcttg 29866161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 40430781 - 40430735
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  40430781 actttttagatacattaaataatttatgtatttggtttaggttcttg 40430735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 42263585 - 42263539
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  42263585 actttttagatacattaaataatttatgtatttggtttaggttcttg 42263539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 2100052 - 2100096
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  2100052 tttttagatacattaaataatttatgtatttggtttaggttcttg 2100096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 30864790 - 30864744
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||    
T  30864790 actttttagatacattaaataatttatgtatttggtttaagttcttg 30864744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 32880940 - 32880986
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||    
T  32880940 actttttatatacattaaataatttatgtatttggtttaggttcttg 32880986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 41260058 - 41260104
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  41260058 acttttttgatacattaaataatttatgtatttggtttaggttcttg 41260104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 43658040 - 43657998
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggtt 43  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  43658040 actttttagatacattaaataatttatgtatttggtttaggtt 43657998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 32197411 - 32197455
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||| |||||||||||||||||||||| |||||||    
T  32197411 tttttagatacattaaataatttatgtatttggtttatgttcttg 32197455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 44737397 - 44737361
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtt 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  44737397 actttttagatacattgaataatttatgtatttggtt 44737361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 27596764 - 27596729
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggt 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  27596764 actttttagatacattgaataatttatgtatttggt 27596729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 1944649 - 1944603
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| |||||| |||| ||||||||||||||||||    
T  1944649 actttttagatacattaaataatatatgaatttggtttaggttcttg 1944603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 7765909 - 7765863
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||| ||||||||||| ||||||||||||    
T  7765909 actttttagatacattaaataaattatgtatttgatttaggttcttg 7765863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 13775744 - 13775786
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggtt 43  Q
    |||||||||||| ||| ||||||||||||||||||||||||||    
T  13775744 actttttagatatattaaataatttatgtatttggtttaggtt 13775786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 20427034 - 20427080
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||| ||| ||||||||||||||||| ||||||||||||    
T  20427034 actttttagatagattaaataatttatgtatttgatttaggttcttg 20427080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 22857917 - 22857875
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggttct 45  Q
    |||||||||||| ||||||||||||||||||||||||| ||||    
T  22857917 tttttagatacaatgaataatttatgtatttggtttagattct 22857875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 38598489 - 38598535
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||| ||| ||| ||||||||||||||||||||||||||||||    
T  38598489 actttttatatatattaaataatttatgtatttggtttaggttcttg 38598535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 42341651 - 42341697
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||| ||||||| ||||||||||||||||||||||| ||||||    
T  42341651 actttttaaatacattaaataatttatgtatttggtttagattcttg 42341697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 27182110 - 27182147
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttag 40  Q
    |||| |||||||||||||||||||||||||||||||||    
T  27182110 ttttcagatacattgaataatttatgtatttggtttag 27182147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 27831652 - 27831689
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttag 40  Q
    |||| |||||||||||||||||||||||||||||||||    
T  27831652 ttttcagatacattgaataatttatgtatttggtttag 27831689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 11711439 - 11711393
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||| ||||||||| |||||||||||||||||  |||||||||||    
T  11711439 acttttaagatacattaaataatttatgtatttgacttaggttcttg 11711393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 22857837 - 22857867
Alignment:
Q  1 actttttagatacattgaataatttatgtat 31  Q
    |||||||||||||||||||||||||||||||    
T  22857837 actttttagatacattgaataatttatgtat 22857867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 32750457 - 32750411
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    ||||||||||||||||  |||||||||||||||| ||||| ||||||    
T  32750457 actttttagatacattacataatttatgtatttgatttagattcttg 32750411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 39377869 - 39377907
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggttta 39  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  39377869 actttttagatacatcaaataatttatgtatttggttta 39377907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 3037838 - 3037805
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggt 36  Q
    ||||||||| ||||||||||||||||||||||||    
T  3037838 tttttagattcattgaataatttatgtatttggt 3037805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 33913188 - 33913228
Alignment:
Q  5 tttagatacattgaataatttatgtatttggtttaggttct 45  Q
    |||||||| ||| ||||||||||||||||||||||| ||||    
T  33913188 tttagatatattaaataatttatgtatttggtttagattct 33913228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 41205603 - 41205567
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggttta 39  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  41205603 tttttagatatattaaataatttatgtatttggttta 41205567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 43068589 - 43068561
Alignment:
Q  3 tttttagatacattgaataatttatgtat 31  Q
    |||||||||||||||||||||||||||||    
T  43068589 tttttagatacattgaataatttatgtat 43068561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 45065695 - 45065663
Alignment:
Q  1 actttttagatacattgaataatttatgtattt 33  Q
    |||||||||||||||| ||||||||||||||||    
T  45065695 actttttagatacattaaataatttatgtattt 45065663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 14281623 - 14281669
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  14281623 actttttagatacattgaataatttatgtatttggtttaggttcttg 14281669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 23398113 - 23398159
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  23398113 actttttagatacattgaataatttatgtatttggtttaggttcttg 23398159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 38830516 - 38830562
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  38830516 actttttagatacattgaataatttatgtatttggtttaggttcttg 38830562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 9302034 - 9301988
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  9302034 actttttagatacattaaataatttatgtatttggtttaggttcttg 9301988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 1674085 - 1674041
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  1674085 tttttagatacattaaataatttatgtatttggtttaggttcttg 1674041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 2961219 - 2961176
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttc 44  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  2961219 actttttagatacattaaataatttatgtatttggtttaggttc 2961176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 10380505 - 10380462
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttc 44  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  10380505 actttttagatacattaaataatttatgtatttggtttaggttc 10380462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2352342 - 2352388
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||    
T  2352342 actttttagatatattaaataatttatgtatttggtttaggttcttg 2352388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 9548705 - 9548751
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||    
T  9548705 actttttagatacattaaataatttatgtatttgatttaggttcttg 9548751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 10065370 - 10065324
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||    
T  10065370 actttttagatacattaaataatttatgtatttgatttaggttcttg 10065324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 24595033 - 24594987
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||    
T  24595033 actttttagatacattaaataatttatatatttggtttaggttcttg 24594987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 28359186 - 28359140
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||    
T  28359186 actttttagatacattaaataatttatgtatttggttttggttcttg 28359140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 28989305 - 28989351
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||    
T  28989305 actttttagatacattaaataatttatgtatttggtttagattcttg 28989351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 29312472 - 29312518
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||    
T  29312472 actttttagatacattaaataatttatgtatttgatttaggttcttg 29312518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 40161288 - 40161246
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggtt 43  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  40161288 actttttagatacattaaataatttatgtatttggtttaggtt 40161246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 45536278 - 45536232
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||    
T  45536278 actttttagatacatcaaataatttatgtatttggtttaggttcttg 45536232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 7796203 - 7796159
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||    
T  7796203 tttttagatacattaaataatttatgtatttggtttagattcttg 7796159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 23537434 - 23537390
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||    
T  23537434 tttttagataaattaaataatttatgtatttggtttaggttcttg 23537390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 26545030 - 26545076
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    ||||||||||| |||| |||||||||||||||||||||| |||||||    
T  26545030 actttttagattcattaaataatttatgtatttggtttaagttcttg 26545076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 30264889 - 30264843
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||| ||| |||||||||| |||||||||||||||||||    
T  30264889 actttttagatatattaaataatttatatatttggtttaggttcttg 30264843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 26550402 - 26550357
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttctt 46  Q
    |||||||||| ||||| ||||||||||||||||| |||||||||||    
T  26550402 actttttagaaacattaaataatttatgtatttgctttaggttctt 26550357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 34718926 - 34718963
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttag 40  Q
    |||||||||||||| |||||||||||||||||||||||    
T  34718926 tttttagatacattaaataatttatgtatttggtttag 34718963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 15289808 - 15289848
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggtt 43  Q
    |||||||||||||| |||||||||| |||||||||||||||    
T  15289808 tttttagatacattaaataatttatatatttggtttaggtt 15289848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 6784692 - 6784738
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| |||||||||| |||||| || |||||||||    
T  6784692 actttttagatacattaaataatttatatatttgattcaggttcttg 6784738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 26733818 - 26733856
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggttta 39  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  26733818 actttttagatacattaaataatctatgtatttggttta 26733856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 46320264 - 46320226
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggttta 39  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  46320264 actttttagatacatcaaataatttatgtatttggttta 46320226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 33325368 - 33325405
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttag 40  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  33325368 tttttagatacattaaataatttatgtatctggtttag 33325405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 24463324 - 24463368
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||| ||| |||||||||| ||||||||||| |||||||    
T  24463324 tttttagatatattaaataatttatatatttggtttatgttcttg 24463368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 53621443 - 53621398
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttctt 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  53621443 actttttagatacattgaataatttatgtatttggtttaggttctt 53621398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 6246641 - 6246687
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  6246641 actttttagatacattaaataatttatgtatttggtttaggttcttg 6246687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 7350321 - 7350275
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  7350321 actttttagatacattaaataatttatgtatttggtttaggttcttg 7350275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 18135428 - 18135382
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  18135428 actttttagatacattgaataatttatgtatttgatttaggttcttg 18135382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 23125679 - 23125725
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  23125679 actttttagatacattaaataatttatgtatttggtttaggttcttg 23125725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 31227304 - 31227350
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  31227304 actttttagatacattaaataatttatgtatttggtttaggttcttg 31227350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 35328972 - 35329018
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  35328972 actttttagatacattaaataatttatgtatttggtttaggttcttg 35329018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 36099520 - 36099566
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  36099520 actttttagatacattaaataatttatgtatttggtttaggttcttg 36099566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 38688026 - 38687980
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  38688026 actttttagatacattaaataatttatgtatttggtttaggttcttg 38687980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 47948972 - 47949018
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  47948972 actttttagatacattaaataatttatgtatttggtttaggttcttg 47949018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 49122635 - 49122590
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttctt 46  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  49122635 actttttagatacattgaataatttatatatttggtttaggttctt 49122590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 20688455 - 20688495
Alignment:
Q  7 tagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  20688455 tagatacattgaataatttatgtatttggtttaggttcttg 20688495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 51833047 - 51833091
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  51833047 tttttagatacattaaataatttatgtatttggtttaggttcttg 51833091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 2279557 - 2279600
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttc 44  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  2279557 actttttagatacattaaataatttatgtatttggtttaggttc 2279600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 5970394 - 5970348
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||    
T  5970394 actttttagacacattaaataatttatgtatttggtttaggttcttg 5970348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 15170998 - 15170952
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||    
T  15170998 actttttagatacattgaataatttatgtatttgatttatgttcttg 15170952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 18430370 - 18430324
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||    
T  18430370 actttttagatacattaaataatttatgtatttgatttaggttcttg 18430324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 19485605 - 19485651
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||    
T  19485605 actttttaaatacattaaataatttatgtatttggtttaggttcttg 19485651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 21221150 - 21221192
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggtt 43  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  21221150 actttttagatacattaaataatttatgtatttggtttaggtt 21221192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 31854494 - 31854452
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggtt 43  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  31854494 actttttagatacattaaataatttatgtatttggtttaggtt 31854452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 39877436 - 39877478
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggtt 43  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  39877436 actttttagatacattaaataatttatgtatttggtttaggtt 39877478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4758892 - 4758847
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttctt 46  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||    
T  4758892 actttttagatacattaaataatttatgtatttgatttaggttctt 4758847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 580524 - 580484
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggtt 43  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  580524 tttttagatacattaaataatttatgtatttggtttaggtt 580484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 20114096 - 20114131
Alignment:
Q  5 tttagatacattgaataatttatgtatttggtttag 40  Q
    ||||||||||||||||||||||||||||||||||||    
T  20114096 tttagatacattgaataatttatgtatttggtttag 20114131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2411955 - 2411909
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| |||||||||||||||| |||||| ||||||    
T  2411955 actttttagatacattaaataatttatgtatttagtttagattcttg 2411909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 4698658 - 4698700
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggttct 45  Q
    ||||||||||||||||||||||||||||| |||||||| ||||    
T  4698658 tttttagatacattgaataatttatgtatctggtttagattct 4698700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 21229262 - 21229304
Alignment:
Q  5 tttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||| ||||||| ||||||||||||||||||||||||||||||    
T  21229262 tttaaatacattaaataatttatgtatttggtttaggttcttg 21229304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 27006538 - 27006584
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||| ||||| ||||||    
T  27006538 actttttagatacattaaataatttatgtatttgatttagattcttg 27006584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 55292225 - 55292183
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggttct 45  Q
    |||||||||||||| ||||||||||||||||| ||||||||||    
T  55292225 tttttagatacattaaataatttatgtatttgatttaggttct 55292183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 56216267 - 56216304
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggttt 38  Q
    |||||||||||||||| |||||||||||||||||||||    
T  56216267 actttttagatacattaaataatttatgtatttggttt 56216304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 2385308 - 2385264
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||| |||||||||||||||| |||||| ||||||    
T  2385308 tttttagatacattaaataatttatgtattttgtttagattcttg 2385264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 3085985 - 3085949
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggttta 39  Q
    |||||||||||||| ||||||||||||||||||||||    
T  3085985 tttttagatacattaaataatttatgtatttggttta 3085949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 39834309 - 39834353
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||| |||||||||| ||||| |||||||||||||    
T  39834309 tttttagatacattaaataatttatatattttgtttaggttcttg 39834353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 53303771 - 53303815
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||    
T  53303771 tttttagatacactaaataatttatgtatttggtttagattcttg 53303815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 54612007 - 54612043
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtt 37  Q
    |||||||||||||||| ||||||||||||||||||||    
T  54612007 actttttagatacattaaataatttatgtatttggtt 54612043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 44200087 - 44200048
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttag 40  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  44200087 actttttagatacactaaataatttatgtatttggtttag 44200048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 52536066 - 52536024
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggtt 43  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||    
T  52536066 actttttatatacattaaataatttatgtatttgatttaggtt 52536024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 4698736 - 4698703
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggt 36  Q
    ||||||||||||||||||||||||||||| ||||    
T  4698736 tttttagatacattgaataatttatgtatatggt 4698703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 56216349 - 56216317
Alignment:
Q  1 actttttagatacattgaataatttatgtattt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  56216349 actttttagatacattgaataatgtatgtattt 56216317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 38858 - 38904
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  38858 actttttagatacattaaataatttatgtatttggtttaggttcttg 38904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 29277 - 29323
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  29277 actttttagatacattaaataatttatgtatttggtttaggttcttg 29323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 492420 - 492374
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  492420 actttttagatacattaaataatttatgtatttggtttaggttcttg 492374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 3411365 - 3411411
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  3411365 actttttagatacattaaataatttatgtatttggtttaggttcttg 3411411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 5909586 - 5909540
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  5909586 actttttagatacattaaataatttatgtatttggtttaggttcttg 5909540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 12763262 - 12763308
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  12763262 actttttagatacattaaataatttatgtatttggtttaggttcttg 12763308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 19979609 - 19979563
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  19979609 actttttagatacattaaataatttatgtatttggtttaggttcttg 19979563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 23248783 - 23248737
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  23248783 actttttagatacattaaataatttatgtatttggtttaggttcttg 23248737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 29770355 - 29770401
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  29770355 actttttagatacattaaataatttatgtatttggtttaggttcttg 29770401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 30866278 - 30866324
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  30866278 actttttagatacattaaataatttatgtatttggtttaggttcttg 30866324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 34281784 - 34281738
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  34281784 actttttagatacattaaataatttatgtatttggtttaggttcttg 34281738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 5347835 - 5347792
Alignment:
Q  4 ttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  5347835 ttttagatacattaaataatttatgtatttggtttaggttcttg 5347792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 12085137 - 12085088
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggttcttggttta 52  Q
    |||||||||||||| ||||||||||||||||| |||||||||||| ||||    
T  12085137 tttttagatacattaaataatttatgtatttgatttaggttcttgattta 12085088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 12426645 - 12426599
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||| ||||||||||||| ||||||    
T  12426645 actttttagatacattaaataatttacgtatttggtttagattcttg 12426599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 32050195 - 32050149
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||||||    
T  32050195 actttttagatatattaaataatttatgtatttggtgtaggttcttg 32050149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 35427774 - 35427736
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggttta 39  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  35427774 actttttagatacattaaataatttatgtatttggttta 35427736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 7107665 - 7107702
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttag 40  Q
    |||||||||||||| |||||||||||||||||||||||    
T  7107665 tttttagatacattaaataatttatgtatttggtttag 7107702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 20397850 - 20397894
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||| |||||||||||||||| |||||| ||||||    
T  20397850 tttttagatacattaaataatttatgtattttgtttagattcttg 20397894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 26563954 - 26563998
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttct 45  Q
    |||||||||||| ||||||||| ||||||||||||||||| ||||    
T  26563954 actttttagatatattgaataaattatgtatttggtttagattct 26563998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 46449811 - 46449843
Alignment:
Q  1 actttttagatacattgaataatttatgtattt 33  Q
    |||||||||||||||||||||||||||||||||    
T  46449811 actttttagatacattgaataatttatgtattt 46449843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 10599429 - 10599390
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggt 42  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  10599429 tttttagatacatacaataatttatgtatttggtttaggt 10599390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 7107745 - 7107715
Alignment:
Q  1 actttttagatacattgaataatttatgtat 31  Q
    |||||||||||||||||||||||||||||||    
T  7107745 actttttagatacattgaataatttatgtat 7107715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7463482 - 7463528
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||| |||||||  |||||||||||||||||||||| ||||||    
T  7463482 actttttaaatacattacataatttatgtatttggtttagattcttg 7463528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 46680944 - 46680898
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| |||||||||| |||||| |||| |||||||    
T  46680944 actttttagatacattaaataatttatatatttgatttaagttcttg 46680898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 15074659 - 15074696
Alignment:
Q  10 atacattgaataatttatgtatttggtttaggttcttg 47  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  15074659 atacattaaataatttatgtatttggtttaagttcttg 15074696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 18672204 - 18672163
Alignment:
Q  4 ttttagatacattgaataatttatgtatttggtttaggttct 45  Q
    ||||||||||||||||||||||||||||  ||||||| ||||    
T  18672204 ttttagatacattgaataatttatgtatccggtttagattct 18672163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 23248701 - 23248733
Alignment:
Q  1 actttttagatacattgaataatttatgtattt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  23248701 actttttagatacattgaataatatatgtattt 23248733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 390920 - 390874
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  390920 actttttagatacattaaataatttatgtatttggtttaggttcttg 390874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 885717 - 885671
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  885717 actttttagatacattaaataatttatgtatttggtttaggttcttg 885671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7405477 - 7405523
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  7405477 actttttagatacattaaataatttatgtatttggtttaggttcttg 7405523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 22898886 - 22898932
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  22898886 actttttagatacattgaataatttatatatttggtttaggttcttg 22898932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 34639155 - 34639109
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  34639155 actttttagatacattgaaaaatttatgtatttggtttaggttcttg 34639109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 31971142 - 31971099
Alignment:
Q  4 ttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  31971142 ttttagatacattaaataatttatgtatttggtttaggttcttg 31971099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 6047911 - 6047865
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||    
T  6047911 actttttagatacattaaataatttatgtatttgatttaggttcttg 6047865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 6801666 - 6801620
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||    
T  6801666 actttttagatacattaaataattcatgtatttggtttaggttcttg 6801620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 13144324 - 13144278
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||    
T  13144324 actttttagatacattaaataatttatgtattttgtttaggttcttg 13144278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 14931291 - 14931333
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggtt 43  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  14931291 actttttagatacattaaataatttatgtatttggtttaggtt 14931333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 17225358 - 17225312
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||    
T  17225358 actttttagatacattaaataatttatatatttggtttaggttcttg 17225312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 22880951 - 22880997
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||    
T  22880951 actttttagatacattgaataatttatatatttagtttaggttcttg 22880997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 24949746 - 24949700
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||    
T  24949746 actttttagatacattaaataatttatgtatttggtttatgttcttg 24949700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 33859523 - 33859569
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||    
T  33859523 actttttagatacattaaataatttatgtatttggtttagtttcttg 33859569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 766540 - 766500
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggtt 43  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  766540 tttttagatacattaaataatttatgtatttggtttaggtt 766500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 30686577 - 30686619
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggtt 43  Q
    |||||||||||||||| |||||||||||||||| |||||||||    
T  30686577 actttttagatacattaaataatttatgtatttcgtttaggtt 30686619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 8559026 - 8558984
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggttctt 46  Q
    |||||||||||||  |||||||||||||||||||||||||||||    
T  8559026 tttttagatacata-aataatttatgtatttggtttaggttctt 8558984  T

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Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 6045796 - 6045750
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||| ||| ||||||||||||||||| ||||| ||||||    
T  6045796 actttttagatagattaaataatttatgtatttgatttagattcttg 6045750  T

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Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 36429 - 36392
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttag 40  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  36429 tttttagatatattaaataatttatgtatttggtttag 36392  T

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Target: scaffold0246 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 15189 - 15234
Alignment:
Q  2 ctttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  15189 ctttttagatacattaaataatttatgtatttggtttaggttcttg 15234  T

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Target: scaffold2107 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold2107
Description:

Target: scaffold2107; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 476 - 522
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||    
T  476 actttttagatacattaaataatttatgtatttcgtttaggttcttg 522  T

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Target: scaffold0221 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 11063 - 11109
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||    
T  11063 actttttagatacattaaataatttatgtatttggtttaagttcttg 11109  T

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Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 35987 - 36032
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttctt 46  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||    
T  35987 actttttagatacattaaataatttatgtattttgtttaggttctt 36032  T

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Target: scaffold0007 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 77458 - 77414
Alignment:
Q  3 tttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||    
T  77458 tttttagatacattaaataatttatgtatttggtttagattcttg 77414  T

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Target: scaffold0592 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 412 - 458
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||| ||| |||||||||| ||| |||||||||||||||    
T  412 actttttagatatattaaataatttatatatatggtttaggttcttg 458  T

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Target: scaffold0006 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 282733 - 282779
Alignment:
Q  1 actttttagatacattgaataatttatgtatttggtttaggttcttg 47  Q
    ||||||||  ||||||||||||||||||||||| |||||| ||||||    
T  282733 actttttacctacattgaataatttatgtattttgtttagattcttg 282779  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 183828 - 183860
Alignment:
Q  4 ttttagatacattgaataatttatgtatttggt 36  Q
    ||||| |||||||||||||||||||||||||||    
T  183828 ttttaaatacattgaataatttatgtatttggt 183860  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 3664 - 3696
Alignment:
Q  1 actttttagatacattgaataatttatgtattt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  3664 actttttagatacattgaataatgtatgtattt 3696  T

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Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 3728 - 3700
Alignment:
Q  19 ataatttatgtatttggtttaggttcttg 47  Q
    |||||||||||||||||||||||||||||    
T  3728 ataatttatgtatttggtttaggttcttg 3700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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