View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19026_high_9 (Length: 458)

Name: NF19026_high_9
Description: NF19026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19026_high_9
NF19026_high_9
[»] chr6 (1 HSPs)
chr6 (104-203)||(22422529-22422628)
[»] chr8 (4 HSPs)
chr8 (202-241)||(19970458-19970497)
chr8 (202-241)||(21022312-21022351)
chr8 (203-241)||(16367878-16367916)
chr8 (202-251)||(26960209-26960258)
[»] chr1 (4 HSPs)
chr1 (203-241)||(38236310-38236348)
chr1 (203-241)||(6923530-6923568)
chr1 (203-251)||(51387129-51387177)
chr1 (206-255)||(40978754-40978803)
[»] chr5 (5 HSPs)
chr5 (195-253)||(4082578-4082636)
chr5 (203-250)||(40951477-40951524)
chr5 (203-253)||(16349715-16349765)
chr5 (200-240)||(25099233-25099273)
chr5 (200-240)||(25158323-25158363)
[»] chr4 (7 HSPs)
chr4 (201-240)||(19745250-19745289)
chr4 (201-240)||(19794517-19794556)
chr4 (202-240)||(9199865-9199903)
chr4 (202-240)||(9201404-9201442)
chr4 (203-241)||(17558825-17558863)
chr4 (203-264)||(32225583-32225644)
chr4 (201-241)||(23976704-23976744)
[»] chr3 (3 HSPs)
chr3 (202-241)||(44708226-44708265)
chr3 (203-240)||(5561553-5561590)
chr3 (200-241)||(53693220-53693261)
[»] chr7 (2 HSPs)
chr7 (194-240)||(7853691-7853737)
chr7 (203-245)||(9031590-9031632)


Alignment Details
Target: chr6 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 104 - 203
Target Start/End: Original strand, 22422529 - 22422628
Alignment:
Q  104 aacacatttagatatgcctatcctctagataggagtgttactaaagattttttaaaattgatcaagttgtattcatatagttaatttgatataagaatta 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22422529 aacacatttagatatgcctatcctctagataggagtgttactaaagattttttaaaattgatcaagttgtattcatatagttaatttgatataagaatta 22422628  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 241
Target Start/End: Complemental strand, 19970497 - 19970458
Alignment:
Q  202 tactagatcgtctacccgtgcggcagcacgggtcatatat 241  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  19970497 tactagatcgtctacccgtgcggcagcacgggtcatatat 19970458  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 21022312 - 21022351
Alignment:
Q  202 tactagatcgtctacccgtgcggcagcacgggtcatatat 241  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21022312 tactagatcgtctacccgtgcggcagcacgggtcatatat 21022351  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 16367916 - 16367878
Alignment:
Q  203 actagatcgtctacccgtgcggcagcacgggtcatatat 241  Q
    |||||||||||||||||||| || |||||||||||||||    
T  16367916 actagatcgtctacccgtgctgccgcacgggtcatatat 16367878  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 26960258 - 26960209
Alignment:
Q  202 tactagatcgtctacccgtgcggcagcacgggtcatatatttttaaaaac 251  Q
    |||||||||||||| |||||| || |||||||||||||||  ||||||||    
T  26960258 tactagatcgtctatccgtgctgccgcacgggtcatatatagttaaaaac 26960209  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 38236310 - 38236348
Alignment:
Q  203 actagatcgtctacccgtgcggcagcacgggtcatatat 241  Q
    |||||||||||||||||||||||||||||||||||||||    
T  38236310 actagatcgtctacccgtgcggcagcacgggtcatatat 38236348  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 6923568 - 6923530
Alignment:
Q  203 actagatcgtctacccgtgcggcagcacgggtcatatat 241  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  6923568 actagatcgtctacccgtgcagcagcacgggtcatatat 6923530  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 51387129 - 51387177
Alignment:
Q  203 actagatcgtctacccgtgcggcagcacgggtcatatatttttaaaaac 251  Q
    |||||||||||||||||||| || |||||||||||||||  ||||||||    
T  51387129 actagatcgtctacccgtgctgccgcacgggtcatatatagttaaaaac 51387177  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 40978754 - 40978803
Alignment:
Q  206 agatcgtctacccgtgcggcagcacgggtcatatatttttaaaaacataa 255  Q
    ||||||||||||||||| || ||||||||||||||   ||||||||||||    
T  40978754 agatcgtctacccgtgctgccgcacgggtcatatacgattaaaaacataa 40978803  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 253
Target Start/End: Complemental strand, 4082636 - 4082578
Alignment:
Q  195 taagaattactagatcgtctacccgtgcggcagcacgggtcatatatttttaaaaacat 253  Q
    ||||||| ||||||||||| |||||||| || |||||||||||||||  ||||||||||    
T  4082636 taagaatcactagatcgtccacccgtgctgccgcacgggtcatatatagttaaaaacat 4082578  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 40951524 - 40951477
Alignment:
Q  203 actagatcgtctacccgtgcggcagcacgggtcatatatttttaaaaa 250  Q
    |||||||||||||||||||| || |||||||||||||||  |||||||    
T  40951524 actagatcgtctacccgtgctgccgcacgggtcatatatagttaaaaa 40951477  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 16349715 - 16349765
Alignment:
Q  203 actagatcgtctacccgtgcggcagcacgggtcatatatttttaaaaacat 253  Q
    ||||||||||| |||||||| || |||||||||||||||  ||||||||||    
T  16349715 actagatcgtccacccgtgctgccgcacgggtcatatatagttaaaaacat 16349765  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 25099233 - 25099273
Alignment:
Q  200 attactagatcgtctacccgtgcggcagcacgggtcatata 240  Q
    |||||||||||||| |||||||| || ||||||||||||||    
T  25099233 attactagatcgtccacccgtgctgccgcacgggtcatata 25099273  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 25158323 - 25158363
Alignment:
Q  200 attactagatcgtctacccgtgcggcagcacgggtcatata 240  Q
    |||||||||||||| |||||||| || ||||||||||||||    
T  25158323 attactagatcgtccacccgtgctgccgcacgggtcatata 25158363  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 19745289 - 19745250
Alignment:
Q  201 ttactagatcgtctacccgtgcggcagcacgggtcatata 240  Q
    ||||||||||||| ||||||||||| ||||||||||||||    
T  19745289 ttactagatcgtccacccgtgcggccgcacgggtcatata 19745250  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 19794517 - 19794556
Alignment:
Q  201 ttactagatcgtctacccgtgcggcagcacgggtcatata 240  Q
    ||||||||||||| ||||||||||| ||||||||||||||    
T  19794517 ttactagatcgtccacccgtgcggccgcacgggtcatata 19794556  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 9199865 - 9199903
Alignment:
Q  202 tactagatcgtctacccgtgcggcagcacgggtcatata 240  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  9199865 tactagatcgtctacccgtgctgccgcacgggtcatata 9199903  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 9201404 - 9201442
Alignment:
Q  202 tactagatcgtctacccgtgcggcagcacgggtcatata 240  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  9201404 tactagatcgtctacccgtgctgccgcacgggtcatata 9201442  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 17558825 - 17558863
Alignment:
Q  203 actagatcgtctacccgtgcggcagcacgggtcatatat 241  Q
    |||||||||||||||||||| || |||||||||||||||    
T  17558825 actagatcgtctacccgtgctgccgcacgggtcatatat 17558863  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 32225583 - 32225644
Alignment:
Q  203 actagatcgtctacccgtgcggcagcacgggtcatatatttttaaaaacataattcaatgat 264  Q
    ||||||||||| ||| |||| || |||||||||||||||  ||||||||||||  |||||||    
T  32225583 actagatcgtccaccggtgctgccgcacgggtcatatatagttaaaaacataacgcaatgat 32225644  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 23976704 - 23976744
Alignment:
Q  201 ttactagatcgtctacccgtgcggcagcacgggtcatatat 241  Q
    ||||||||||||| |||||||| || |||||||||||||||    
T  23976704 ttactagatcgtccacccgtgctgccgcacgggtcatatat 23976744  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 44708226 - 44708265
Alignment:
Q  202 tactagatcgtctacccgtgcggcagcacgggtcatatat 241  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  44708226 tactagatcgtctacccgtgctgccgcacgggtcatatat 44708265  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 5561553 - 5561590
Alignment:
Q  203 actagatcgtctacccgtgcggcagcacgggtcatata 240  Q
    |||||||||||||||||||| || ||||||||||||||    
T  5561553 actagatcgtctacccgtgctgccgcacgggtcatata 5561590  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 53693261 - 53693220
Alignment:
Q  200 attactagatcgtctacccgtgcggcagcacgggtcatatat 241  Q
    ||||||||||||||||||||||| || |||| ||||||||||    
T  53693261 attactagatcgtctacccgtgctgccgcacaggtcatatat 53693220  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 7853737 - 7853691
Alignment:
Q  194 ataagaattactagatcgtctacccgtgcggcagcacgggtcatata 240  Q
    |||| ||||||||||||||||||||||||  | ||||||||||||||    
T  7853737 ataacaattactagatcgtctacccgtgctaccgcacgggtcatata 7853691  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 9031632 - 9031590
Alignment:
Q  203 actagatcgtctacccgtgcggcagcacgggtcatatattttt 245  Q
    |||||||||||||||||||| || |||||||||||||| ||||    
T  9031632 actagatcgtctacccgtgcagccgcacgggtcatataatttt 9031590  T

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