View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19026_low_13 (Length: 413)
Name: NF19026_low_13
Description: NF19026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19026_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 42769176 - 42768766
Alignment:
| Q |
1 |
cacttctttctcaaccctttgataatatcaacctcctctcttcctctgcagctatgtatggtggcaaaatggcaaccattcataacggtgcgcctattca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769176 |
cacttctttctcaaccctttgataatatcaacctcctctcttcctctgcagctatgtatggtggcaaaatggcaaccattcataacggtgcgcctattca |
42769077 |
T |
|
| Q |
101 |
aatctacgctaaactcaaactcgaatcgaataaaaccaaaatccaccttgtttggaatagaggtctttatgttcaaggctactcaccaaccattcatcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769076 |
aatctacgctaaactcaaactcgaatcgaataaaaccaaaatccaccttgtttggaatagaggtctttatgttcaaggctactcaccaaccattcatcca |
42768977 |
T |
|
| Q |
201 |
acaacatcaattgatctatcttctattgccacttttgatgttttgtcaggttcatcatcctcatcatctcaacacactgacctcacaatgttaagagtga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42768976 |
acaacatcaattgatctatcttctattgccacttttgatgttttgtcaggttcatcatcctcatcatctcaacacactgacctcacaatgttaagagtga |
42768877 |
T |
|
| Q |
301 |
ttcatggtgtcctaaatgcaatatcttggggtatacttttaccaacaggagcgataacagcacgttatcttcgacactttcagacattaggcccttcatg |
400 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42768876 |
ttcatggcgtcctaaatgcaatatcttggggtatacttttaccaacaggagcgataacagcacgttatcttcgacactttcagacattaggcccttcatg |
42768777 |
T |
|
| Q |
401 |
gttctgtgctc |
411 |
Q |
| |
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| T |
42768776 |
gttctatgctc |
42768766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 31 - 256
Target Start/End: Original strand, 2452382 - 2452607
Alignment:
| Q |
31 |
acctcctctcttcctctgcagctatgtatggtggcaaaatggcaaccattcataacggtgcgcctattcaaatctacgctaaactcaaactcgaatcgaa |
130 |
Q |
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||||| |||||||| | ||||| || ||||||||||||| ||| ||||||||||| ||||| || || |||||||| || ||| ||||||| ||||| || |
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| T |
2452382 |
acctcatctcttccacggcagccatatatggtggcaaaagggccaccattcataatggtgcccccatccaaatctatgccaaattcaaactagaatcaaa |
2452481 |
T |
|
| Q |
131 |
taaaaccaaaatccaccttgtttggaatagaggtctttatgttcaaggctactcaccaaccattcatccaacaacatcaattgatctatcttctattgcc |
230 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||||||||||||| || || ||||||||||| || || | |||||| ||||| |||||| |
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| T |
2452482 |
caaaaccaaaatccaccttgtttggaatcgaggactttatgttcaaggctactcgcctactattcatccaaccacctccactgatctctcttccattgcc |
2452581 |
T |
|
| Q |
231 |
acttttgatgttttgtcaggttcatc |
256 |
Q |
| |
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|| || || ||||||||||||||||| |
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|
| T |
2452582 |
accttggacgttttgtcaggttcatc |
2452607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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