View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19026_low_14 (Length: 404)
Name: NF19026_low_14
Description: NF19026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19026_low_14 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 71 - 404
Target Start/End: Complemental strand, 3895519 - 3895186
Alignment:
| Q |
71 |
ctttccaacaacagtctccttgatcttttgtgttgcatccttcgctgtctcccacgctccttgggccgtcttcttcgccatttccccagcactcttcaaa |
170 |
Q |
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| T |
3895519 |
ctttccaacaacagtctccttgatcttttgtgttgcatccttcgctgtctcccacgctccttgggccgtcttcttcgccatttccccagcactcttcaaa |
3895420 |
T |
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| Q |
171 |
gcctctgtcgccgacccagcaacctcccccgtcttctctgccgttttctcagctccttcttttgtcttatcagccatgtaactcgctccttccttggttc |
270 |
Q |
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| T |
3895419 |
gcctctgtcgccgacccagcaacctcccccgtcttctccgccgttttctcagctccttcttttgtcttatcagccatgtaactcgctccttccttggttc |
3895320 |
T |
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| Q |
271 |
tttcctttgcatcataagcataatctctagctttctccccagcactctctgcagcttcctttgttctatccttggcatcataagcatagtctcttatact |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3895319 |
tttcctttgcatcataagcataatctctagctttctccccagcactctctgcagcttcctttgttctatccttggcatcataagcatagtctcttatact |
3895220 |
T |
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| Q |
371 |
ctctccagcattctctgcagcatcctttgttctc |
404 |
Q |
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| T |
3895219 |
ctctccagcattctctgcagcatcctttgttctc |
3895186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 259 - 385
Target Start/End: Complemental strand, 3895265 - 3895139
Alignment:
| Q |
259 |
cttccttggttctttcctttgcatcataagcataatctctagctttctccccagcactctctgcagcttcctttgttctatccttggcatcataagcata |
358 |
Q |
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| T |
3895265 |
cttcctttgttctatccttggcatcataagcatagtctcttatactctctccagcattctctgcagcatcctttgttctctcctttgcatcataagcata |
3895166 |
T |
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| Q |
359 |
gtctcttatactctctccagcattctc |
385 |
Q |
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| T |
3895165 |
atctctagccttctctccagcattctc |
3895139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 3895574 - 3895538
Alignment:
| Q |
13 |
catcatctactactacaccagaaccaccactaccacg |
49 |
Q |
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| T |
3895574 |
catcatctactactacaccagaaccaccactaccacg |
3895538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 322
Target Start/End: Complemental strand, 3895079 - 3895016
Alignment:
| Q |
259 |
cttccttggttctttcctttgcatcataagcataatctctagctttctccccagcactctctgc |
322 |
Q |
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|||| |||||||| || ||| | ||||||||||| |||||||||||||| |||||| ||||||| |
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| T |
3895079 |
cttcattggttctgtcttttacctcataagcatagtctctagctttctctccagcattctctgc |
3895016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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