View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19026_low_15 (Length: 398)
Name: NF19026_low_15
Description: NF19026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19026_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 10 - 380
Target Start/End: Complemental strand, 33633287 - 33632916
Alignment:
| Q |
10 |
attatactgattgagaaagattttaaagcatcagaggaggtatttgaatctacagaattaaattgatcactagtcattttaaatagaataaaatacaaga |
109 |
Q |
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| T |
33633287 |
attatactgattgagaaagattttaaagcatcagaggtggtatttgaatctacagaattaaattgatcactagtcattttaaatagaataaaatacaaga |
33633188 |
T |
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| Q |
110 |
gaataacacttgtttgtgggatttacacgatgacatgtttcgtgcacatgagcattttccaagcctaacattttgagataa-ggaataacaagttaatgg |
208 |
Q |
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| T |
33633187 |
gaatagcaattgtttgtgggatttacacgacgacatgtttcgtgcacatgagcattttccaagcctaacattttgagataaaggcataacaagttaatgg |
33633088 |
T |
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| Q |
209 |
accaatattttgagatcaaaagatgtgtcgagatataacaaagtctctattataaagatgcgtcgaacatataaaccaaagggtctgatttgtctcattc |
308 |
Q |
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| T |
33633087 |
accaatattttgagatcaaaagatgtgtcgagatataacaaagtctctattataaagatgcgtcgaacatataaaccaaagggtctgatttgtctcattc |
33632988 |
T |
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| Q |
309 |
atcaaacaataagaaaatccatattgatacaatgagaccctctttctccaattgaccaatagatgaacatgt |
380 |
Q |
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| T |
33632987 |
atcaaacaataagaaaatccatattgatacaatgagaccctcttgctccaattgaccaatagatgaacatgt |
33632916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 171
Target Start/End: Complemental strand, 29444386 - 29444280
Alignment:
| Q |
65 |
aattaaattgatcactagtcattttaaatagaataaaatacaagagaataacacttgtttgtgggatttacacgatgacatgtttcgtgcacatgagcat |
164 |
Q |
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| T |
29444386 |
aattaaattggtccttagtcattttaaatcaaatcaaatacaacagtatagcaattgttcgtgggatttgcacgacaacatgtttcgtgtacatgagcat |
29444287 |
T |
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| Q |
165 |
tttccaa |
171 |
Q |
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| T |
29444286 |
ttcccaa |
29444280 |
T |
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