View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19026_low_19 (Length: 336)

Name: NF19026_low_19
Description: NF19026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19026_low_19
NF19026_low_19
[»] chr3 (19 HSPs)
chr3 (14-205)||(54439586-54439783)
chr3 (15-199)||(45684647-45684831)
chr3 (49-199)||(36709415-36709565)
chr3 (22-203)||(21740004-21740185)
chr3 (49-199)||(42674924-42675073)
chr3 (15-200)||(15481242-15481426)
chr3 (22-205)||(14863944-14864127)
chr3 (52-194)||(24926178-24926320)
chr3 (90-203)||(6175959-6176072)
chr3 (91-205)||(29309955-29310069)
chr3 (65-131)||(48192320-48192386)
chr3 (67-129)||(50544747-50544809)
chr3 (65-130)||(47537789-47537854)
chr3 (98-168)||(18366098-18366168)
chr3 (67-161)||(43121197-43121284)
chr3 (69-102)||(2364802-2364835)
chr3 (69-102)||(19919811-19919844)
chr3 (94-203)||(30166825-30166934)
chr3 (77-117)||(52250691-52250731)
[»] chr6 (21 HSPs)
chr6 (22-205)||(33805258-33805441)
chr6 (49-199)||(23065531-23065681)
chr6 (20-194)||(4478464-4478641)
chr6 (65-161)||(17078713-17078809)
chr6 (65-131)||(11060415-11060481)
chr6 (65-131)||(18051002-18051068)
chr6 (65-203)||(13086060-13086198)
chr6 (90-203)||(23346948-23347061)
chr6 (91-203)||(15674376-15674488)
chr6 (67-199)||(19256163-19256295)
chr6 (67-205)||(11469092-11469229)
chr6 (67-199)||(503017-503149)
chr6 (67-199)||(33640441-33640572)
chr6 (65-199)||(21549369-21549503)
chr6 (108-205)||(26205905-26206002)
chr6 (65-106)||(649644-649685)
chr6 (65-117)||(32186204-32186256)
chr6 (67-146)||(5085564-5085643)
chr6 (67-118)||(8264746-8264797)
chr6 (69-102)||(2554131-2554164)
chr6 (57-102)||(10576832-10576877)
[»] chr5 (19 HSPs)
chr5 (22-199)||(35122191-35122368)
chr5 (49-199)||(6866869-6867019)
chr5 (43-199)||(38357966-38358122)
chr5 (20-199)||(30509532-30509711)
chr5 (20-199)||(30549872-30550051)
chr5 (49-202)||(19512947-19513100)
chr5 (67-199)||(22094735-22094867)
chr5 (90-200)||(10486404-10486514)
chr5 (67-131)||(20208272-20208336)
chr5 (65-131)||(6049742-6049808)
chr5 (108-202)||(31864798-31864892)
chr5 (108-194)||(31864353-31864439)
chr5 (91-203)||(34481495-34481607)
chr5 (74-116)||(380431-380473)
chr5 (65-106)||(7000358-7000399)
chr5 (69-106)||(23238908-23238945)
chr5 (69-102)||(27116755-27116788)
chr5 (69-102)||(35983373-35983406)
chr5 (69-102)||(42514245-42514278)
[»] chr2 (20 HSPs)
chr2 (15-199)||(28400035-28400219)
chr2 (49-199)||(35488342-35488492)
chr2 (65-200)||(15018198-15018333)
chr2 (90-203)||(26894093-26894206)
chr2 (90-203)||(26899532-26899645)
chr2 (69-131)||(1380607-1380669)
chr2 (22-203)||(9668487-9668668)
chr2 (15-188)||(16213656-16213822)
chr2 (77-199)||(22724924-22725046)
chr2 (136-199)||(8065746-8065809)
chr2 (67-161)||(11028393-11028487)
chr2 (108-205)||(13550681-13550778)
chr2 (108-205)||(13551134-13551231)
chr2 (57-102)||(14440257-14440302)
chr2 (67-106)||(25380965-25381004)
chr2 (108-199)||(36804683-36804774)
chr2 (77-115)||(37445626-37445664)
chr2 (65-114)||(11234049-11234098)
chr2 (90-203)||(45422066-45422179)
chr2 (77-117)||(43310792-43310832)
[»] scaffold0308 (1 HSPs)
scaffold0308 (22-205)||(17623-17806)
[»] chr8 (15 HSPs)
chr8 (43-199)||(44082497-44082653)
chr8 (49-163)||(6901414-6901528)
chr8 (65-131)||(17659352-17659418)
chr8 (67-161)||(36157677-36157770)
chr8 (83-194)||(12134866-12134977)
chr8 (49-205)||(11393827-11393983)
chr8 (93-199)||(23942636-23942742)
chr8 (22-114)||(24794235-24794327)
chr8 (57-102)||(43270965-43271010)
chr8 (55-117)||(38046869-38046931)
chr8 (69-102)||(172621-172654)
chr8 (90-131)||(7452898-7452939)
chr8 (69-102)||(7924911-7924944)
chr8 (69-102)||(8300328-8300361)
chr8 (69-106)||(32267087-32267124)
[»] chr7 (18 HSPs)
chr7 (15-199)||(18767879-18768063)
chr7 (49-199)||(18671675-18671825)
chr7 (20-205)||(17856212-17856390)
chr7 (102-199)||(41340091-41340188)
chr7 (97-199)||(5327316-5327418)
chr7 (90-203)||(13440599-13440712)
chr7 (49-199)||(34457643-34457793)
chr7 (49-186)||(36227648-36227785)
chr7 (67-199)||(45993099-45993230)
chr7 (22-203)||(13553665-13553846)
chr7 (65-106)||(34232220-34232261)
chr7 (90-203)||(46626368-46626481)
chr7 (66-118)||(33795923-33795975)
chr7 (69-102)||(235020-235053)
chr7 (69-102)||(4937710-4937743)
chr7 (90-131)||(15653258-15653299)
chr7 (69-102)||(31423127-31423160)
chr7 (49-117)||(17056034-17056102)
[»] chr4 (25 HSPs)
chr4 (75-194)||(53810372-53810491)
chr4 (90-203)||(55299158-55299271)
chr4 (65-200)||(19114957-19115092)
chr4 (52-199)||(26694436-26694583)
chr4 (20-173)||(4524138-4524290)
chr4 (90-203)||(23872957-23873070)
chr4 (67-199)||(8935597-8935729)
chr4 (65-131)||(10562886-10562952)
chr4 (94-203)||(20675572-20675681)
chr4 (69-131)||(42778763-42778825)
chr4 (22-114)||(42953064-42953156)
chr4 (65-131)||(20396103-20396169)
chr4 (88-155)||(34975079-34975146)
chr4 (67-118)||(49925833-49925884)
chr4 (67-199)||(23657820-23657952)
chr4 (108-203)||(3129470-3129565)
chr4 (90-203)||(7662789-7662903)
chr4 (65-161)||(53486466-53486555)
chr4 (69-102)||(19755792-19755825)
chr4 (69-102)||(19783981-19784014)
chr4 (69-102)||(23642173-23642206)
chr4 (69-102)||(23647831-23647864)
chr4 (69-102)||(47419329-47419362)
chr4 (69-102)||(48312619-48312652)
chr4 (67-131)||(13158339-13158402)
[»] scaffold0029 (1 HSPs)
scaffold0029 (90-203)||(134335-134448)
[»] scaffold0002 (2 HSPs)
scaffold0002 (90-203)||(312162-312275)
scaffold0002 (90-203)||(327616-327729)
[»] chr1 (14 HSPs)
chr1 (90-203)||(32352791-32352904)
chr1 (90-203)||(48072912-48073025)
chr1 (110-188)||(34853144-34853222)
chr1 (22-203)||(39430755-39430936)
chr1 (67-199)||(25504479-25504611)
chr1 (67-159)||(28097491-28097582)
chr1 (67-131)||(26721156-26721220)
chr1 (22-203)||(49264445-49264626)
chr1 (65-131)||(30110478-30110543)
chr1 (22-114)||(20796146-20796238)
chr1 (69-102)||(6051128-6051161)
chr1 (148-205)||(19579960-19580017)
chr1 (69-102)||(35541574-35541607)
chr1 (49-117)||(22191349-22191417)
[»] scaffold0912 (1 HSPs)
scaffold0912 (65-131)||(2426-2492)
[»] scaffold0179 (2 HSPs)
scaffold0179 (67-161)||(8055-8149)
scaffold0179 (67-161)||(12989-13083)
[»] scaffold0131 (1 HSPs)
scaffold0131 (108-202)||(4038-4132)
[»] scaffold0007 (1 HSPs)
scaffold0007 (65-131)||(182636-182702)
[»] scaffold0418 (1 HSPs)
scaffold0418 (90-203)||(8150-8263)
[»] scaffold0472 (1 HSPs)
scaffold0472 (69-106)||(3777-3814)
[»] scaffold0034 (1 HSPs)
scaffold0034 (69-102)||(105425-105458)


Alignment Details
Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 54439783 - 54439586
Alignment:
Q  14 catcatcgaaccaaccaccacctataccgccaacgccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacct 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||| ||||||    
T  54439783 catcatcgaaccaaccaccacctataccgccaacgccatcacgaatcctatctacctccctccaccacgaagaacaactcc-gaccccaacctccaacct 54439685  T
Q  114 ccc-------acctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcatttccctaacaatg 205  Q
    |||       |||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  54439684 cccatctccgacctatttcgccatatctaatgactaaaacgtaataccacaaaccttctctatccactaatatcctccaacatcatttacctaacaatg 54439586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 45684647 - 45684831
Alignment:
Q  15 atcatcgaaccaaccaccacctataccgccaacgccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctc 114  Q
    |||| |||||||||| |||||| |  | || |||||||||||||||||| ||||||||| | ||||| |||||  |||||||||||| |||| |||||||    
T  45684647 atcaccgaaccaacctccacctgtgtcaccgacgccatcacgaatcctacctacctcccgccaccacaaagaaacactccggccccccacctccaacctc 45684746  T
Q  115 ccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcatttcccta 199  Q
    ||||||| ||||||||| | |||||||||||| ||||||||||  ||||||||||| ||| | ||||||||||| ||||| ||||    
T  45684747 ccacctacttcgccataacgagcgactaaaacctgataccacagcccttctctatcgactaacatcctccaacaccatttaccta 45684831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 49 - 199
Target Start/End: Original strand, 36709415 - 36709565
Alignment:
Q  49 ccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgt 148  Q
    ||||||| ||||||| ||||||||| | ||||| |||||  |||||||||||| |||| |||||||||||||| ||||||||| |  ||||||||||| |    
T  36709415 ccatcacaaatcctacctacctcccgccaccacaaagaaacactccggccccccacctccaacctcccacctacttcgccataacgggcgactaaaacat 36709514  T
Q  149 gataccacaaaccttctctatccacttatatcctccaacatcatttcccta 199  Q
    |||||||||| |||||||| || ||| | ||||||||||| ||||| ||||    
T  36709515 gataccacaacccttctctgtcaactaacatcctccaacaccatttaccta 36709565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 21740185 - 21740004
Alignment:
Q  22 aaccaaccaccacctataccgccaacgccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccaccta 121  Q
    ||||||| ||| |||| | ||||| | ||||| ||||||||  | ||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||    
T  21740185 aaccaactaccccctacatcgccatccccatctcgaatcctcccgacctccctccaccaagaagaacaactccggcccccaacctccaacctcccaccta 21740086  T
Q  122 tttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcatttccctaacaa 203  Q
     ||||||||| |  ||||||| |||   |||||| |||||| ||||||| ||  | ||||||||||| ||||| ||||||||    
T  21740085 cttcgccataacgggcgactagaacacaataccataaacctactctatctaccaacatcctccaacaccatttacctaacaa 21740004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 49 - 199
Target Start/End: Complemental strand, 42675073 - 42674924
Alignment:
Q  49 ccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgt 148  Q
    |||||||| |||||  ||||||||| | ||||| |||||  ||||||||||||| ||| |||||||||| ||| ||||||||| |  ||||||||||| |    
T  42675073 ccatcacggatcctgcctacctcccgccaccacaaagaaatactccggccccca-cctccaacctcccatctacttcgccataacgggcgactaaaacct 42674975  T
Q  149 gataccacaaaccttctctatccacttatatcctccaacatcatttcccta 199  Q
    |||||||||| ||||||||||| ||| | ||||||||||| ||||| ||||    
T  42674974 gataccacaacccttctctatcaactaacatcctccaacaccatttaccta 42674924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 15481426 - 15481242
Alignment:
Q  15 atcatcgaaccaaccaccacctataccgccaacgccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctc 114  Q
    |||||||||||| || ||||||||  | || || ||||||||||||||| ||||||||| | ||||| | |||  ||| ||||||||| ||| |||||||    
T  15481426 atcatcgaaccaccctccacctatgtcaccgacaccatcacgaatcctacctacctcccgccaccacaaggaaacacttcggccccca-cctccaacctc 15481328  T
Q  115 ccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcatttccctaa 200  Q
    ||||||| || |||||| |  ||||||| ||| ||||||||||| |||||||| || ||| | ||||||||||| ||||| |||||    
T  15481327 ccacctactttgccataacgggcgactagaacatgataccacaacccttctctgtcaactaacatcctccaacaccatttacctaa 15481242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 22 - 205
Target Start/End: Complemental strand, 14864127 - 14863944
Alignment:
Q  22 aaccaaccaccacctataccgccaacgccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccaccta 121  Q
    ||||||| ||| |||| ||| ||| | ||||| ||||||||  ||||||||||| |||| |||||||||||||||||||| |||| |||||||||||| |    
T  14864127 aaccaactaccccctacaccaccatccccatctcgaatcctccctacctccctccaccaagaagaacaactccggccccccacctccaacctcccaccca 14864028  T
Q  122 tttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcatttccctaacaatg 205  Q
      |||||||| |  ||||| | |||   |||||| |||||| || |||| ||  | ||||||||||| ||||| ||||||||||    
T  14864027 cctcgccataacaggcgacaagaacactataccataaacctactttatcgaccaacatcctccaacaccatttacctaacaatg 14863944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 52 - 194
Target Start/End: Complemental strand, 24926320 - 24926178
Alignment:
Q  52 tcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgat 151  Q
    |||||||||||  ||||||||  | |||| | ||||| ||||||||  ||||||| ||||||||||| |   ||| |||| |  |||||||||||  |||    
T  24926320 tcacgaatcctccctacctccggccaccaagtagaaccactccggcgaccaacctccaacctcccacatgcctcgtcataacgggcgactaaaacacgat 24926221  T
Q  152 accacaaaccttctctatccacttatatcctccaacatcattt 194  Q
    ||||||||||||||||||||||| | ||||||||||| |||||    
T  24926220 accacaaaccttctctatccactaacatcctccaacaccattt 24926178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 6176072 - 6175959
Alignment:
Q  90 actccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacat 189  Q
    ||||||||||||||||| |||||| ||||||| ||||||||| || |||||||||||   ||||||||||||  |||| |||||    |||| ||||||     
T  6176072 actccggcccccaacctccaacctgccacctaattcgccatacctggcgactaaaaccctataccacaaaccacctctgtccaccagcatccgccaacac 6175973  T
Q  190 catttccctaacaa 203  Q
    ||||| ||||||||    
T  6175972 cattttcctaacaa 6175959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 91 - 205
Target Start/End: Original strand, 29309955 - 29310069
Alignment:
Q  91 ctccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatc 190  Q
    |||||||||||||||| |||||| ||||||| |||| |||| || |||||||||||   ||||||||||||  || | |||||  | |||| |||||| |    
T  29309955 ctccggcccccaacctccaacctgccacctaattcggcatacctggcgactaaaaccctataccacaaaccacctttgtccaccaacatccgccaacacc 29310054  T
Q  191 atttccctaacaatg 205  Q
    |||| ||||||||||    
T  29310055 attttcctaacaatg 29310069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 48192320 - 48192386
Alignment:
Q  65 ctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccata 131  Q
    ||||||||||| |||| |||||| ||||||  |||||||||| |||||||||||||| |||||||||    
T  48192320 ctacctccctccaccaagaagaaaaactccaacccccaacctccaacctcccacctacttcgccata 48192386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 50544747 - 50544809
Alignment:
Q  67 acctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgcca 129  Q
    ||||||||| | || |||||||||||||||||||| |||| |||||||||||||| |||||||    
T  50544747 acctccctccatcaagaagaacaactccggcccccgacctccaacctcccacctacttcgcca 50544809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 47537789 - 47537854
Alignment:
Q  65 ctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccat 130  Q
    ||||||||||| |||| |||||||||||| |||||| ||||| |||||| ||||||| ||||||||    
T  47537789 ctacctccctccaccaagaagaacaactctggcccctaacctccaaccttccacctacttcgccat 47537854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 18366168 - 18366098
Alignment:
Q  98 ccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctcta 168  Q
    |||| |||| |||||||||||||| ||||||||| |  ||||||||||| ||| ||||||| |||||||||    
T  18366168 cccccacctccaacctcccacctacttcgccataacgggcgactaaaacatgaaaccacaacccttctcta 18366098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 161
Target Start/End: Complemental strand, 43121284 - 43121197
Alignment:
Q  67 acctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaacc 161  Q
    ||||||||| |||| |||||||||||||||||||||       |||||| ||||||||||||||| |  |||||||||||  ||||||| |||||    
T  43121284 acctccctccaccaagaagaacaactccggccccca-------acctcctacctatttcgccataacgggcgactaaaactcgataccaaaaacc 43121197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 2364802 - 2364835
Alignment:
Q  69 ctccctctaccacgaagaacaactccggccccca 102  Q
    ||||||| ||||||||||||||||||||||||||    
T  2364802 ctccctccaccacgaagaacaactccggccccca 2364835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 19919844 - 19919811
Alignment:
Q  69 ctccctctaccacgaagaacaactccggccccca 102  Q
    ||||||| ||||||||||||||||||||||||||    
T  19919844 ctccctccaccacgaagaacaactccggccccca 19919811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 203
Target Start/End: Complemental strand, 30166934 - 30166825
Alignment:
Q  94 cggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcatt 193  Q
    ||||||||||||| |||||| ||||||| ||||||||| || || ||||| ||   ||||||||||||  |||| || ||  | |||| |||||| ||||    
T  30166934 cggcccccaacctccaacctgccacctaattcgccatacctggcaactaagacactataccacaaaccacctctgtcaaccaacatccgccaacaccatt 30166835  T
Q  194 tccctaacaa 203  Q
    | ||||||||    
T  30166834 tacctaacaa 30166825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 52250731 - 52250691
Alignment:
Q  77 accacgaagaacaactccggcccccaacctacaacctccca 117  Q
    |||| ||||||| ||||||||||||||||| ||||||||||    
T  52250731 accaagaagaaccactccggcccccaacctccaacctccca 52250691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 5e-47; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 22 - 205
Target Start/End: Original strand, 33805258 - 33805441
Alignment:
Q  22 aaccaaccaccacctataccgccaacgccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccaccta 121  Q
    ||||||||||| |||| | ||||||| || |||| ||||||  ||||||||| | |||| |||||||||||||||||||| |||| ||||||||||||||    
T  33805258 aaccaaccaccccctacatcgccaacaccctcacaaatcctccctacctcccgccaccaagaagaacaactccggccccccacctccaacctcccaccta 33805357  T
Q  122 tttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcatttccctaacaatg 205  Q
    |||||||||| |  ||||||||||| ||||||||||| ||||||||||||||| | ||||||||||| |||||||||| |||||    
T  33805358 tttcgccatagcgggcgactaaaacatgataccacaatccttctctatccactaacatcctccaacaccatttccctagcaatg 33805441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 49 - 199
Target Start/End: Complemental strand, 23065681 - 23065531
Alignment:
Q  49 ccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgt 148  Q
    ||||||||||||||| ||||||||  | |||||||||||| |||||||||||| |||| |||||||||||||| ||||||||| |  ||||||||||| |    
T  23065681 ccatcacgaatcctacctacctcctgccaccacgaagaaccactccggccccccacctccaacctcccacctacttcgccataacgggcgactaaaacat 23065582  T
Q  149 gataccacaaaccttctctatccacttatatcctccaacatcatttcccta 199  Q
    |||||||||||||||||||||| ||| | | |||| |||| ||||| ||||    
T  23065581 gataccacaaaccttctctatcaactaacaacctctaacaccatttaccta 23065531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 4478464 - 4478641
Alignment:
Q  20 cgaaccaaccaccacctataccgccaacgccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaa---cctacaacctccc 116  Q
    |||||||||||||  ||| | ||||||| || || | ||||||  | |||||||||  |||  |||||||||||||||||||||   ||| |||||||||    
T  4478464 cgaaccaaccaccctctacatcgccaacaccctcgcaaatcctcccaacctccctccgccaataagaacaactccggcccccaattacctccaacctccc 4478563  T
Q  117 acctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcattt 194  Q
    ||||| ||||||||| |  ||||||||||| ||||||||||| ||||| ||||||||| | ||||||||||| |||||    
T  4478564 acctacttcgccataacgggcgactaaaacatgataccacaacccttccctatccactaacatcctccaacaccattt 4478641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 161
Target Start/End: Complemental strand, 17078809 - 17078713
Alignment:
Q  65 ctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaacc 161  Q
    ||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||| ||||||||| |  |||||||| ||  ||||||| |||||    
T  17078809 ctacctccctccaccaagaagaacaactccggcccccaacctccaacctcccacctacttcgccataacgggcgactaagactcgataccaaaaacc 17078713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 11060481 - 11060415
Alignment:
Q  65 ctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccata 131  Q
    ||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  11060481 ctacctccctccaccaagaagaacaactccggcccccaacctccaacctcccacctaattcgccata 11060415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 18051068 - 18051002
Alignment:
Q  65 ctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccata 131  Q
    ||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  18051068 ctacctccctccaccaagaagaacaactccggcccccaacctccaacctcccacctacttcgccata 18051002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 65 - 203
Target Start/End: Original strand, 13086060 - 13086198
Alignment:
Q  65 ctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttc 164  Q
    |||||||| || ||||  |||||||||||||||||||||||| ||||||||| || |  |||||||| |  ||||||| |||   ||||||||||||| |    
T  13086060 ctacctccttccaccaaaaagaacaactccggcccccaacctccaacctccctccaacctcgccataacgggcgactagaacactataccacaaacctac 13086159  T
Q  165 tctatccacttatatcctccaacatcatttccctaacaa 203  Q
    |||||| ||  | ||||||||||| ||||| ||||||||    
T  13086160 tctatctaccaacatcctccaacaccatttacctaacaa 13086198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 23347061 - 23346948
Alignment:
Q  90 actccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacat 189  Q
    ||||||||||||||||| |||||| ||||||| ||||||||| || |||||||||||   ||||||||||||  ||||||||||    |||| ||||||     
T  23347061 actccggcccccaacctccaacctgccacctaattcgccatacctggcgactaaaaccctataccacaaaccacctctatccaccagcatccgccaacac 23346962  T
Q  190 catttccctaacaa 203  Q
    ||||| ||||||||    
T  23346961 cattttcctaacaa 23346948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 203
Target Start/End: Original strand, 15674376 - 15674488
Alignment:
Q  91 ctccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatc 190  Q
    |||||||||||||||| |||||| ||||||| ||| |||||||| |||||||||||   |||||||||||| ||||  |||||  | |||| |||||| |    
T  15674376 ctccggcccccaacctccaacctgccacctaattcaccatatctggcgactaaaaccctataccacaaaccatctcggtccaccaacatccgccaacacc 15674475  T
Q  191 atttccctaacaa 203  Q
    |||| ||||||||    
T  15674476 attttcctaacaa 15674488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 199
Target Start/End: Original strand, 19256163 - 19256295
Alignment:
Q  67 acctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctc 166  Q
    ||||||| | |||| |||||||||||| |||||||||||| |||||||||||  |  |||||||| |  |||||||||||   |||||| |||||  | |    
T  19256163 acctcccgccaccaagaagaacaactctggcccccaacctccaacctcccacacacctcgccataacgggcgactaaaactctataccaaaaaccacccc 19256262  T
Q  167 tatccacttatatcctccaacatcatttcccta 199  Q
    |||||||| | ||||||||||| ||||||||||    
T  19256263 tatccactaacatcctccaacaccatttcccta 19256295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 205
Target Start/End: Original strand, 11469092 - 11469229
Alignment:
Q  67 acctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctc 166  Q
    ||||||||| |||| |||||||||||||| |||||  ||| ||||||||||||||  || |||||||  |||||||| ||  |||||||||| ||||||     
T  11469092 acctccctccaccaagaagaacaactccg-cccccttcctccaacctcccacctacgtcaccatatcgggcgactaacacacgataccacaacccttctt 11469190  T
Q  167 tatccacttatatcctccaacatcatttccctaacaatg 205  Q
    |||| ||  | ||||||||||| ||||| |||| |||||    
T  11469191 tatctaccaacatcctccaacaccatttacctagcaatg 11469229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 199
Target Start/End: Complemental strand, 503149 - 503017
Alignment:
Q  67 acctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctc 166  Q
    ||||||| | |||| ||||||||||||||||||||| ||| |||||||||||  |  |||||||| |  |||||||||||   ||| || |||||  | |    
T  503149 acctcccgccaccaagaagaacaactccggcccccatcctccaacctcccacacacctcgccataacgggcgactaaaactctatatcaaaaaccacccc 503050  T
Q  167 tatccacttatatcctccaacatcatttcccta 199  Q
    |||||||| | ||||||||||| ||||||||||    
T  503049 tatccactaacatcctccaacaccatttcccta 503017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 199
Target Start/End: Original strand, 33640441 - 33640572
Alignment:
Q  67 acctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctc 166  Q
    ||||||| | |||| ||||||||||||||||||| ||||| |||||||||||  |  |||||||| |  |||||||||||   |||||| |||||  | |    
T  33640441 acctcccgccaccaagaagaacaactccggcccc-aacctccaacctcccacacacctcgccataacgggcgactaaaactctataccaaaaaccacccc 33640539  T
Q  167 tatccacttatatcctccaacatcatttcccta 199  Q
    |||||||| | ||||||||||| ||||||||||    
T  33640540 tatccactaacatcctccaacaccatttcccta 33640572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 65 - 199
Target Start/End: Original strand, 21549369 - 21549503
Alignment:
Q  65 ctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttc 164  Q
    ||||||||| | | ||| |||||  |||||| ||||| |||| |||||||||| ||| ||||||||| |  ||||||||||  ||||| ||||| ||||     
T  21549369 ctacctcccgccagcacaaagaaacactccgaccccccacctccaacctcccatctacttcgccataacgggcgactaaaatctgatatcacaaccctta 21549468  T
Q  165 tctatccacttatatcctccaacatcatttcccta 199  Q
    |||||| ||| | ||||||||||| ||||| ||||    
T  21549469 tctatcaactaacatcctccaacaccatttaccta 21549503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 205
Target Start/End: Original strand, 26205905 - 26206002
Alignment:
Q  108 caacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcatttccctaacaatg 205  Q
    |||||| ||||||| |||||||||||| |||||||||||   ||||||||||||  ||||||| ||  ||| || |||||| ||||||| ||||||||    
T  26205905 caacctgccacctaattcgccatatctggcgactaaaaccgtataccacaaaccacctctatcaaccaataaccgccaacaccatttccttaacaatg 26206002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 649685 - 649644
Alignment:
Q  65 ctacctccctctaccacgaagaacaactccggcccccaacct 106  Q
    ||||||||||| |||| |||||||||||||||||||||||||    
T  649685 ctacctccctccaccaagaagaacaactccggcccccaacct 649644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 32186204 - 32186256
Alignment:
Q  65 ctacctccctctaccacgaagaacaactccggcccccaacctacaacctccca 117  Q
    ||||||||||| |||| ||||||  ||||||||||||||||| ||||||||||    
T  32186204 ctacctccctccaccaagaagaagcactccggcccccaacctccaacctccca 32186256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 5085643 - 5085564
Alignment:
Q  67 acctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaac 146  Q
    ||||||| | |||| ||||||||||| ||||||||| ||| |||||||||||  | ||||||||| | || |||||||||    
T  5085643 acctcccgccaccaagaagaacaacttcggcccccatcctccaacctcccacagacttcgccataacgagtgactaaaac 5085564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 8264746 - 8264797
Alignment:
Q  67 acctccctctaccacgaagaacaactccggcccccaacctacaacctcccac 118  Q
    ||||||| | |||| ||||||||||||||||||||| ||| |||||||||||    
T  8264746 acctcccgccaccaagaagaacaactccggcccccatcctccaacctcccac 8264797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 2554131 - 2554164
Alignment:
Q  69 ctccctctaccacgaagaacaactccggccccca 102  Q
    ||||||| ||||||||||||||||||||||||||    
T  2554131 ctccctccaccacgaagaacaactccggccccca 2554164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 10576877 - 10576832
Alignment:
Q  57 aatcctatctacctccctctaccacgaagaacaactccggccccca 102  Q
    ||||||| ||| ||||||| |||||||||| |||||||||||||||    
T  10576877 aatcctaactatctccctccaccacgaagagcaactccggccccca 10576832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 22 - 199
Target Start/End: Complemental strand, 35122368 - 35122191
Alignment:
Q  22 aaccaaccaccacctataccgccaacgccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccaccta 121  Q
    ||||||||||| |||| | | ||||| || |||| ||||||  ||||||||| | |||| |||||||||||| ||||||| |||| |||||| |||||||    
T  35122368 aaccaaccaccccctacatcaccaacaccctcacaaatcctccctacctcccgccaccaagaagaacaactctggccccccacctccaaccttccaccta 35122269  T
Q  122 tttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcatttcccta 199  Q
    |||||||||| |  ||||||||||| ||||||||||| ||||||||||||||| | ||||||||||| ||||||||||    
T  35122268 tttcgccataacgggcgactaaaacctgataccacaatccttctctatccactaacatcctccaacaccatttcccta 35122191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 49 - 199
Target Start/End: Original strand, 6866869 - 6867019
Alignment:
Q  49 ccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgt 148  Q
    ||||||||||||||||||||||||| | |||||||||||| |||| ||||||| |||| |||||||||||||| ||||||||| |  ||||||||||| |    
T  6866869 ccatcacgaatcctatctacctcccgccaccacgaagaaccactctggccccccacctccaacctcccacctacttcgccataacgggcgactaaaacat 6866968  T
Q  149 gataccacaaaccttctctatccacttatatcctccaacatcatttcccta 199  Q
    ||||||||||  |||||||||  ||| | ||||||| ||| ||||| ||||    
T  6866969 gataccacaactcttctctataaactaacatcctccgacaccatttaccta 6867019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 43 - 199
Target Start/End: Original strand, 38357966 - 38358122
Alignment:
Q  43 ccaacgccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgacta 142  Q
    ||||||||||||||||||||| ||||||||| | ||||| | |||  |||||||||||| |||| |||||||||||||| ||||||||| |  |||||||    
T  38357966 ccaacgccatcacgaatcctacctacctcccgccaccacaaggaaacactccggccccccacctccaacctcccacctacttcgccataacgggcgacta 38358065  T
Q  143 aaacgtgataccacaaaccttctctatccacttatatcctccaacatcatttcccta 199  Q
    |||  |||||||||||  |||||||||| ||| | ||||||||||| ||||| ||||    
T  38358066 aaatctgataccacaactcttctctatcaactaacatcctccaacaccatttaccta 38358122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 30509711 - 30509532
Alignment:
Q  20 cgaaccaaccaccacctataccgccaacgccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacc 119  Q
    |||||||| |||| |||| ||||||  | || ||||  |||||  ||||||||| | |||| |||||||||||||||||||| |||| ||| ||||||||    
T  30509711 cgaaccaatcaccccctacaccgcccccaccctcacagatcctccctacctcccgccaccaagaagaacaactccggccccccacctccaatctcccacc 30509612  T
Q  120 tatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcatttcccta 199  Q
     || |||||||| |  ||||||||||| ||||||||||| || |||||||| ||| | | ||||||||| ||||||||||    
T  30509611 gatctcgccataacgggcgactaaaacctgataccacaagccatctctatctactaacaacctccaacaccatttcccta 30509532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 30550051 - 30549872
Alignment:
Q  20 cgaaccaaccaccacctataccgccaacgccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacc 119  Q
    |||||||| |||| |||| ||||||  | || ||||  |||||  ||||||||| | |||| |||||||||||||||||||| |||| ||| ||||||||    
T  30550051 cgaaccaatcaccccctacaccgcccccaccctcacagatcctccctacctcccgccaccaagaagaacaactccggccccccacctccaatctcccacc 30549952  T
Q  120 tatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcatttcccta 199  Q
     || |||||||| |  ||||||||||| ||||||||||| || |||||||| ||| | | ||||||||| ||||||||||    
T  30549951 gatctcgccataacgggcgactaaaacctgataccacaagccatctctatctactaacaacctccaacaccatttcccta 30549872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 202
Target Start/End: Complemental strand, 19513100 - 19512947
Alignment:
Q  49 ccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgt 148  Q
    ||||| ||||||||  ||||||||||| |||| |||||||||||||||||||| |||| |||||||||||| |  |||||||| |  ||||| | |||      
T  19513100 ccatctcgaatcctccctacctccctccaccaagaagaacaactccggccccccacctccaacctcccaccaacctcgccataacgggcgacaagaacac 19513001  T
Q  149 gataccacaaaccttctctatccacttatatcctccaacatcatttccctaaca 202  Q
     ||||||||||||| || |||| ||  | ||||||||||| ||||| |||||||    
T  19513000 tataccacaaacctactttatcgaccaacatcctccaacaccatttacctaaca 19512947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 199
Target Start/End: Complemental strand, 22094867 - 22094735
Alignment:
Q  67 acctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctc 166  Q
    ||||||| | |||||||||||||||| ||||||||| ||| |||||||||||  |  |||||||| | ||||||||||||   |||||| |||||  | |    
T  22094867 acctcccgccaccacgaagaacaacttcggcccccatcctccaacctcccacaaacctcgccataacgagcgactaaaactctataccaaaaaccacccc 22094768  T
Q  167 tatccacttatatcctccaacatcatttcccta 199  Q
    |||||||| | ||||||||||| || |||||||    
T  22094767 tatccactaacatcctccaacaccacttcccta 22094735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 200
Target Start/End: Complemental strand, 10486514 - 10486404
Alignment:
Q  90 actccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacat 189  Q
    ||||||||||||||||| |||||| ||||||| ||||||||| || || ||||||||   |||||||||||| ||| | |||||  | |||| ||||||     
T  10486514 actccggcccccaacctccaacctgccacctaattcgccatacctggcaactaaaaccgtataccacaaaccatctatgtccaccaacatccgccaacac 10486415  T
Q  190 catttccctaa 200  Q
    |||||||||||    
T  10486414 catttccctaa 10486404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 20208336 - 20208272
Alignment:
Q  67 acctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccata 131  Q
    ||||||||| ||||  | |||||||||||||||||||||| |||||||||||||| |||||||||    
T  20208336 acctccctccaccaaaacgaacaactccggcccccaacctccaacctcccacctacttcgccata 20208272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 6049742 - 6049808
Alignment:
Q  65 ctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccata 131  Q
    ||||||||||| |||| |||||||||||| |||||| ||||| |||||||||||||| ||| |||||    
T  6049742 ctacctccctccaccaggaagaacaactctggcccctaacctccaacctcccacctacttcaccata 6049808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 108 - 202
Target Start/End: Original strand, 31864798 - 31864892
Alignment:
Q  108 caacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcatttccctaaca 202  Q
    |||||||||||||||||||||||| || | || ||||||   |||||| || ||| ||||||||||| | ||||||||||| ||||| |||||||    
T  31864798 caacctcccacctatttcgccatagctggtgattaaaaccctataccataagcctcctctatccactaacatcctccaacaccatttacctaaca 31864892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 31864353 - 31864439
Alignment:
Q  108 caacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcattt 194  Q
    |||||||||||||||||||||||| || | || ||||||   |||||| || ||| ||||||||||| | ||||||||||| |||||    
T  31864353 caacctcccacctatttcgccatagctggtgattaaaacactataccataagcctcctctatccactaacatcctccaacaccattt 31864439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 203
Target Start/End: Original strand, 34481495 - 34481607
Alignment:
Q  91 ctccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatc 190  Q
    |||||||||||||||| |||||| |||||||  |||||||| || ||| |||||||   ||||||||| ||  |||| || ||  | |||| |||||| |    
T  34481495 ctccggcccccaacctccaacctgccacctaactcgccatacctggcggctaaaaccctataccacaacccacctctgtctaccaacatccgccaacacc 34481594  T
Q  191 atttccctaacaa 203  Q
    |||||||||||||    
T  34481595 atttccctaacaa 34481607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 380431 - 380473
Alignment:
Q  74 tctaccacgaagaacaactccggcccccaacctacaacctccc 116  Q
    ||||||| ||||||| ||||||||||||||||| |||||||||    
T  380431 tctaccaagaagaaccactccggcccccaacctccaacctccc 380473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 7000399 - 7000358
Alignment:
Q  65 ctacctccctctaccacgaagaacaactccggcccccaacct 106  Q
    ||||||||||| |||| |||||||||||| ||||||||||||    
T  7000399 ctacctccctccaccaagaagaacaactctggcccccaacct 7000358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 23238908 - 23238945
Alignment:
Q  69 ctccctctaccacgaagaacaactccggcccccaacct 106  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  23238908 ctccctccaccacgacgaacaactccggcccccaacct 23238945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 27116788 - 27116755
Alignment:
Q  69 ctccctctaccacgaagaacaactccggccccca 102  Q
    ||||||| ||||||||||||||||||||||||||    
T  27116788 ctccctccaccacgaagaacaactccggccccca 27116755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 35983406 - 35983373
Alignment:
Q  69 ctccctctaccacgaagaacaactccggccccca 102  Q
    ||||||| ||||||||||||||||||||||||||    
T  35983406 ctccctccaccacgaagaacaactccggccccca 35983373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 42514245 - 42514278
Alignment:
Q  69 ctccctctaccacgaagaacaactccggccccca 102  Q
    ||||||| ||||||||||||||||||||||||||    
T  42514245 ctccctccaccacgaagaacaactccggccccca 42514278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 28400219 - 28400035
Alignment:
Q  15 atcatcgaaccaaccaccacctataccgccaacgccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctc 114  Q
    |||| |||||||||| |||||| |  | || |||||||||||||||||| ||||||||| | ||||| |||||  |||||||||||| |||| |||||||    
T  28400219 atcaccgaaccaacctccacctgtgtcaccgacgccatcacgaatcctacctacctcccgccaccacaaagaaacactccggccccccacctccaacctc 28400120  T
Q  115 ccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcatttcccta 199  Q
    ||||||| ||||||||| | |||||||||||| ||||||||||  ||||||||||| ||| | ||||||||||| ||||| ||||    
T  28400119 ccacctacttcgccataacgagcgactaaaacctgataccacatcccttctctatcgactaacatcctccaacaccatttaccta 28400035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 49 - 199
Target Start/End: Original strand, 35488342 - 35488492
Alignment:
Q  49 ccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgt 148  Q
    ||||||||||||||| ||||||||| | |||||||||||| ||| |||||||| |||| |||||||||||||| ||||||||| |  ||||||||||| |    
T  35488342 ccatcacgaatcctacctacctcccgccaccacgaagaaccacttcggccccccacctccaacctcccacctacttcgccataacgggcgactaaaacat 35488441  T
Q  149 gataccacaaaccttctctatccacttatatcctccaacatcatttcccta 199  Q
    |||||||||| ||||||||||| ||| | | ||||||||| ||||| ||||    
T  35488442 gataccacaacccttctctatcaactaacaacctccaacaccatttaccta 35488492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 65 - 200
Target Start/End: Original strand, 15018198 - 15018333
Alignment:
Q  65 ctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttc 164  Q
    ||||||||| | |||| ||||||||||| ||||||||||||| ||||||||||| || ||||||||| | ||||||||||||   |||||| || ||  |    
T  15018198 ctacctcccgccaccaagaagaacaacttcggcccccaacctccaacctcccacatacttcgccataacgagcgactaaaactctataccaaaatccacc 15018297  T
Q  165 tctatccacttatatcctccaacatcatttccctaa 200  Q
     ||||||||| | | ||||||||| |||||||||||    
T  15018298 cctatccactgacaacctccaacaccatttccctaa 15018333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 26894206 - 26894093
Alignment:
Q  90 actccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacat 189  Q
    ||||||||||||||||| |||||| ||||||||||||||||| || |||||||||||   ||||||||||||  || | |||||  | |||| ||||||     
T  26894206 actccggcccccaacctccaacctgccacctatttcgccatacctggcgactaaaaccctataccacaaaccacctatgtccaccaacatccgccaacac 26894107  T
Q  190 catttccctaacaa 203  Q
    ||||| ||||||||    
T  26894106 cattttcctaacaa 26894093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 26899645 - 26899532
Alignment:
Q  90 actccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacat 189  Q
    ||||||||||||||||| |||||| ||||||||||||||||| || |||||||||||   ||||||||||||  || | |||||  | |||| ||||||     
T  26899645 actccggcccccaacctccaacctgccacctatttcgccatacctggcgactaaaaccctataccacaaaccacctatgtccaccaacatccgccaacac 26899546  T
Q  190 catttccctaacaa 203  Q
    ||||| ||||||||    
T  26899545 cattttcctaacaa 26899532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 131
Target Start/End: Original strand, 1380607 - 1380669
Alignment:
Q  69 ctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccata 131  Q
    ||||||| |||| ||||||||||||||||||||||||| ||||||||| |||| |||||||||    
T  1380607 ctccctccaccaagaagaacaactccggcccccaacctccaacctcccgcctacttcgccata 1380669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 9668668 - 9668487
Alignment:
Q  22 aaccaaccaccacctataccgccaacgccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccaccta 121  Q
    ||||||| ||| |||| ||| ||| | ||||| | ||||||  | ||||||||| ||||  |||||||||||||||||||||||| ||||||||| || |    
T  9668668 aaccaactaccccctacaccaccatcaccatctctaatcctccccacctccctccaccaataagaacaactccggcccccaacctccaacctccctccaa 9668569  T
Q  122 tttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcatttccctaacaa 203  Q
      |||||||| |  ||||||| |||   ||||||||| ||| ||||||| ||  | |||||||||||  |||| ||||||||    
T  9668568 cctcgccataacgggcgactagaacactataccacaaccctactctatctaccaacatcctccaacactatttacctaacaa 9668487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 16213656 - 16213822
Alignment:
Q  15 atcatcgaaccaaccaccacctataccgccaacgccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctc 114  Q
    |||| ||||||| || ||||||||  | || || ||||||||||||||| ||||||||| | ||||| |||||  |||||||||||       | |||||    
T  16213656 atcaccgaaccaccctccacctatgtcaccgacaccatcacgaatcctacctacctcccaccaccacaaagaaacactccggcccc-------ccacctc 16213748  T
Q  115 ccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaaca 188  Q
    ||||||| ||||||||| |  ||||||||||| ||||||||| | |||||||| || ||| | ||| |||||||    
T  16213749 ccacctacttcgccataacgggcgactaaaacatgataccacgacccttctctgtcaactaacatcttccaaca 16213822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 199
Target Start/End: Complemental strand, 22725046 - 22724924
Alignment:
Q  77 accacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccactta 176  Q
    |||||||||||||||||||||||||| ||| ||||||||| ||||  ||||||||    ||||||| | | | |||||| |||||  | ||||||||| |    
T  22725046 accacgaagaacaactccggcccccatcctccaacctcccgcctacctcgccatagtgggcgactatatctttataccaaaaaccacccctatccactaa 22724947  T
Q  177 tatcctccaacatcatttcccta 199  Q
     ||||||||||| ||||| ||||    
T  22724946 catcctccaacaccattttccta 22724924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 8065809 - 8065746
Alignment:
Q  136 gcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcatttcccta 199  Q
    ||||||||||| ||||||||||| ||||||||||| ||| | | ||||||||||||||| ||||    
T  8065809 gcgactaaaacatgataccacaacccttctctatcaactaacaacctccaacatcatttaccta 8065746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 161
Target Start/End: Original strand, 11028393 - 11028487
Alignment:
Q  67 acctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaacc 161  Q
    ||||| ||| |||| |||||||||||| |||||||| ||| |||||| ||||||| |||||| || |  |||||||||||  | |||||||||||    
T  11028393 acctctctccaccaagaagaacaactctggcccccatcctccaaccttccacctacttcgccgtaacgggcgactaaaactcggtaccacaaacc 11028487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 205
Target Start/End: Original strand, 13550681 - 13550778
Alignment:
Q  108 caacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcatttccctaacaatg 205  Q
    |||||| ||||||| |||||||||||| || ||||||||   |||||||||| |  ||||||| ||  | | ||||||||| ||||||||||||||||    
T  13550681 caacctgccacctaattcgccatatctggcaactaaaaccctataccacaaatcacctctatcaaccaacaacctccaacaccatttccctaacaatg 13550778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 205
Target Start/End: Original strand, 13551134 - 13551231
Alignment:
Q  108 caacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcatttccctaacaatg 205  Q
    |||||| ||||||| |||||||||||| || ||||||||   |||||||||| |  ||||||| ||  | | ||||||||| ||||||||||||||||    
T  13551134 caacctgccacctaattcgccatatctggcaactaaaaccctataccacaaatcacctctatcaaccaacaacctccaacaccatttccctaacaatg 13551231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 14440257 - 14440302
Alignment:
Q  57 aatcctatctacctccctctaccacgaagaacaactccggccccca 102  Q
    ||||||| ||| ||||||| ||||||||||||||||||||||||||    
T  14440257 aatcctagctatctccctccaccacgaagaacaactccggccccca 14440302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 106
Target Start/End: Complemental strand, 25381004 - 25380965
Alignment:
Q  67 acctccctctaccacgaagaacaactccggcccccaacct 106  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  25381004 acctccctccaccacgaagaacaactctggcccccaacct 25380965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 199
Target Start/End: Original strand, 36804683 - 36804774
Alignment:
Q  108 caacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcatttcccta 199  Q
    ||||||||||| |   |||||||| |  |||||||||||  ||||||||||||||||||| || ||| | ||||||||||| ||||| ||||    
T  36804683 caacctcccacatgcctcgccataacgggcgactaaaacacgataccacaaaccttctctctctactaacatcctccaacaccattttccta 36804774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 37445626 - 37445664
Alignment:
Q  77 accacgaagaacaactccggcccccaacctacaacctcc 115  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  37445626 accacgaagaacaactccggcccccatcctccaacctcc 37445664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 11234098 - 11234049
Alignment:
Q  65 ctacctccctctaccacgaagaacaactccggcccccaacctacaacctc 114  Q
    ||||||||||  ||||  |||||||||||||||||||||||| |||||||    
T  11234098 ctacctcccttcaccaataagaacaactccggcccccaacctccaacctc 11234049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 203
Target Start/End: Original strand, 45422066 - 45422179
Alignment:
Q  90 actccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacat 189  Q
    |||||| |||||||||| |||||| ||||||| ||||||||| || || ||||| ||   ||||||||||||  || | |||||  | |||| ||||||     
T  45422066 actccgacccccaacctccaacctgccacctaattcgccatacctggcaactaagacactataccacaaaccacctttgtccaccaacatccgccaacac 45422165  T
Q  190 catttccctaacaa 203  Q
    ||||| ||||||||    
T  45422166 catttacctaacaa 45422179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 43310792 - 43310832
Alignment:
Q  77 accacgaagaacaactccggcccccaacctacaacctccca 117  Q
    |||| ||||||| ||||||||||||||||| ||||||||||    
T  43310792 accaagaagaaccactccggcccccaacctccaacctccca 43310832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 22 - 205
Target Start/End: Original strand, 17623 - 17806
Alignment:
Q  22 aaccaaccaccacctataccgccaacgccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccaccta 121  Q
    |||| |||||| |||| | ||||||| || |||| ||||||  ||||||||| | |||| ||||||||||||| || ||| |||| ||||||||||||||    
T  17623 aacctaccaccccctacatcgccaacaccctcacaaatcctccctacctcccgccaccaagaagaacaactccagctccccacctccaacctcccaccta 17722  T
Q  122 tttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcatttccctaacaatg 205  Q
    |||||||||| |  ||||||||||| ||||||||||| ||||||||||||||| | |||| |||||| |||||||||| |||||    
T  17723 tttcgccataacgggcgactaaaacatgataccacaatccttctctatccactaacatccaccaacaccatttccctagcaatg 17806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 43 - 199
Target Start/End: Complemental strand, 44082653 - 44082497
Alignment:
Q  43 ccaacgccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgacta 142  Q
    ||||||||||||||||||||| ||||||||| | ||||| |||||  |||||| ||||| |||| |||||||||||||| ||||||||| |  |||||||    
T  44082653 ccaacgccatcacgaatcctacctacctcccgccaccacaaagaaacactccgaccccccacctccaacctcccacctacttcgccataacgggcgacta 44082554  T
Q  143 aaacgtgataccacaaaccttctctatccacttatatcctccaacatcatttcccta 199  Q
    |||| ||||||||||| ||||||||||| ||| | ||||||||||| ||||| ||||    
T  44082553 aaacctgataccacaacccttctctatcaactaacatcctccaacaccatttaccta 44082497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 163
Target Start/End: Original strand, 6901414 - 6901528
Alignment:
Q  49 ccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgt 148  Q
    ||||||||||||||  |||| |||  | |||| ||||||| ||| ||||||||||||| ||||||||||||||  |||||||| |  ||||||||||| |    
T  6901414 ccatcacgaatcctccctacttcctgccaccaagaagaaccacttcggcccccaacctccaacctcccacctacctcgccataacgggcgactaaaacat 6901513  T
Q  149 gataccacaaacctt 163  Q
    |||||||||||||||    
T  6901514 gataccacaaacctt 6901528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 17659352 - 17659418
Alignment:
Q  65 ctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccata 131  Q
    ||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  17659352 ctacctccctccaccaagaagaacaactccggcccccaacctccaacctcccacctacttcgccata 17659418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 161
Target Start/End: Original strand, 36157677 - 36157770
Alignment:
Q  67 acctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaacc 161  Q
    ||||||||| |||| ||||||||||||||||||||||||| |||||||||||||| ||||||||| |  |||||||||||   ||||||||||||    
T  36157677 acctccctccaccaagaagaacaactccggcccccaacctccaacctcccacctacttcgccata-cgggcgactaaaactcaataccacaaacc 36157770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 12134866 - 12134977
Alignment:
Q  83 aagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcct 182  Q
    |||||| ||||||||||||||||| |||||||| | |||  |||||||| |  ||||||||||  |||||||||||||||||||| | |||| | |||||    
T  12134866 aagaaccactccggcccccaacctccaacctccaagctacctcgccataacgggcgactaaaatatgataccacaaaccttctctcttcactaacatcct 12134965  T
Q  183 ccaacatcattt 194  Q
    |||||| |||||    
T  12134966 ccaacaccattt 12134977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 205
Target Start/End: Complemental strand, 11393983 - 11393827
Alignment:
Q  49 ccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgt 148  Q
    ||||| ||||||||  ||||||||||| |||| ||||||||||||||||||||   || |||||||||||| |  |||||||| |  ||||| | |||      
T  11393983 ccatctcgaatcctccctacctccctccaccaagaagaacaactccggccccccgactccaacctcccaccaacctcgccataacgggcgacaagaacac 11393884  T
Q  149 gataccacaaaccttctctatccacttatatcctccaacatcatttccctaacaatg 205  Q
     ||||||||||||| ||||||| ||  | | ||||||||| ||||| ||||||||||    
T  11393883 tataccacaaacctactctatcgaccaacaacctccaacaccatttacctaacaatg 11393827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 199
Target Start/End: Original strand, 23942636 - 23942742
Alignment:
Q  93 ccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcat 192  Q
    ||||||||| |||| |||||||||||||| |||| || | |  ||||||||||| ||||||||||| ||||||||||| ||| | | ||||||||| |||    
T  23942636 ccggccccccacctccaacctcccacctacttcgtcacaacgggcgactaaaacatgataccacaacccttctctatcaactaacaacctccaacaccat 23942735  T
Q  193 ttcccta 199  Q
    || ||||    
T  23942736 ttaccta 23942742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 24794235 - 24794327
Alignment:
Q  22 aaccaaccaccacctataccgccaacgccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctc 114  Q
    ||||||| ||| |||| ||| ||| | ||||| ||||||||  ||||||||||| |||| |||||||||||||||||||| |||| |||||||    
T  24794235 aaccaactaccccctacaccaccatccccatctcgaatcctccctacctccctccaccaagaagaacaactccggccccccacctccaacctc 24794327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 43270965 - 43271010
Alignment:
Q  57 aatcctatctacctccctctaccacgaagaacaactccggccccca 102  Q
    ||||||| ||| ||||||| ||||||||||||||||||||||||||    
T  43270965 aatcctaactatctccctccaccacgaagaacaactccggccccca 43271010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 38046869 - 38046931
Alignment:
Q  55 cgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctccca 117  Q
    ||||| ||| ||| ||||||| | |||||||||||||| ||||||||| ||| ||||||||||    
T  38046869 cgaattctaactatctccctccatcacgaagaacaacttcggcccccatcctccaacctccca 38046931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 172654 - 172621
Alignment:
Q  69 ctccctctaccacgaagaacaactccggccccca 102  Q
    ||||||| ||||||||||||||||||||||||||    
T  172654 ctccctccaccacgaagaacaactccggccccca 172621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 7452898 - 7452939
Alignment:
Q  90 actccggcccccaacctacaacctcccacctatttcgccata 131  Q
    ||||||||||||||||| |||||| ||||||| |||||||||    
T  7452898 actccggcccccaacctccaacctgccacctaattcgccata 7452939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 7924911 - 7924944
Alignment:
Q  69 ctccctctaccacgaagaacaactccggccccca 102  Q
    ||||||| ||||||||||||||||||||||||||    
T  7924911 ctccctccaccacgaagaacaactccggccccca 7924944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 8300328 - 8300361
Alignment:
Q  69 ctccctctaccacgaagaacaactccggccccca 102  Q
    ||||||| ||||||||||||||||||||||||||    
T  8300328 ctccctccaccacgaagaacaactccggccccca 8300361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 32267087 - 32267124
Alignment:
Q  69 ctccctctaccacgaagaacaactccggcccccaacct 106  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  32267087 ctccctccaccacgacgaacaactccggcccccaacct 32267124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 18767879 - 18768063
Alignment:
Q  15 atcatcgaaccaaccaccacctataccgccaacgccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctc 114  Q
    |||| ||||||| || ||||||||  | ||||||||||||||||||||| ||||||||| | ||||| |||||  |||||||||||| |||| |||||||    
T  18767879 atcaccgaaccaccctccacctatgtcaccaacgccatcacgaatcctacctacctcccgccaccacaaagaaacactccggccccccacctccaacctc 18767978  T
Q  115 ccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcatttcccta 199  Q
    ||||||| || |||||| |  | ||||||||| ||||||||||| ||||||||||| ||| | ||||||||||| ||||| ||||    
T  18767979 ccacctactttgccataacgggagactaaaacctgataccacaacccttctctatcaactaacatcctccaacaccatttaccta 18768063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 49 - 199
Target Start/End: Original strand, 18671675 - 18671825
Alignment:
Q  49 ccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgt 148  Q
    ||||||||||||||| ||||||||| | |||| ||||||  |||||||||||| |||| |||||||||||||| ||||||||| | |||||||||||| |    
T  18671675 ccatcacgaatcctacctacctcccgccaccatgaagaaacactccggccccccacctccaacctcccacctacttcgccataacgagcgactaaaacat 18671774  T
Q  149 gataccacaaaccttctctatccacttatatcctccaacatcatttcccta 199  Q
    |||||||||| ||| ||||||| ||| | ||||||||||| ||||| ||||    
T  18671775 gataccacaaccctgctctatcaactaacatcctccaacaccatttaccta 18671825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 17856212 - 17856390
Alignment:
Q  20 cgaaccaaccaccacctataccgccaacgccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacc 119  Q
    ||||||||||||| |||| | ||||||| || |||| ||||||  ||||||| | | |||| ||||||||||||||| |||| ||||       ||||||    
T  17856212 cgaaccaaccaccccctacatcgccaacaccctcacaaatcctccctacctctcgccaccaagaagaacaactccggacccccacct-------cccacc 17856304  T
Q  120 tatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcatttccctaacaatg 205  Q
    |||||||||||| |  ||||||||||| ||||||||||| ||||||||||||||| | ||||||||||| |||||||||| |||||    
T  17856305 tatttcgccataacgggcgactaaaacatgataccacaatccttctctatccactaacatcctccaacaccatttccctagcaatg 17856390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 199
Target Start/End: Original strand, 41340091 - 41340188
Alignment:
Q  102 aacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcatttcccta 199  Q
    ||||| ||||||||||||||  ||||||||||  ||||||||||| || |||||||||||||||||||||||| | ||||||||||| ||||||||||    
T  41340091 aacctccaacctcccacctacctcgccatatcgggcgactaaaacatggtaccacaaaccttctctatccactaacatcctccaacaccatttcccta 41340188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 97 - 199
Target Start/End: Original strand, 5327316 - 5327418
Alignment:
Q  97 cccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcatttcc 196  Q
    |||||| ||| ||||||||||||||  ||||||||||  ||||||||||| || ||||| |||||||||||||||||| | ||||||||||| |||||||    
T  5327316 cccccagcctccaacctcccacctacctcgccatatcgggcgactaaaacatggtaccataaaccttctctatccactaacatcctccaacaccatttcc 5327415  T
Q  197 cta 199  Q
    |||    
T  5327416 cta 5327418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 90 - 203
Target Start/End: Original strand, 13440599 - 13440712
Alignment:
Q  90 actccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacat 189  Q
    ||||||||||||||||| |||||| ||||||| ||||||||| || |||||||||||  |||||||||||||  ||||||||||  | |||| ||||||     
T  13440599 actccggcccccaacctccaacctgccacctaattcgccatacctggcgactaaaacccgataccacaaaccacctctatccaccaacatccgccaacac 13440698  T
Q  190 catttccctaacaa 203  Q
    ||||| ||||||||    
T  13440699 cattttcctaacaa 13440712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 199
Target Start/End: Complemental strand, 34457793 - 34457643
Alignment:
Q  49 ccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgt 148  Q
    |||||||| |||||  ||||||||| | ||||| |||||  |||||||||||| |||| |||||||||||||| || |||||| |  | ||||||||| |    
T  34457793 ccatcacggatcctgcctacctcccgccaccacaaagaaacactccggccccccacctccaacctcccacctactttgccataacgggtgactaaaacct 34457694  T
Q  149 gataccacaaaccttctctatccacttatatcctccaacatcatttcccta 199  Q
    |||||||||| ||||||||||| ||| | |||  |||||| ||||| ||||    
T  34457693 gataccacaacccttctctatcaactaacatcacccaacaccatttaccta 34457643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 186
Target Start/End: Complemental strand, 36227785 - 36227648
Alignment:
Q  49 ccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgt 148  Q
    ||||||||||||||| |||  || | | |||| ||||||  |||||||||||| |||| |||||||||||||| ||||||||| |  ||||||| ||| |    
T  36227785 ccatcacgaatcctacctaaatcacgccaccaagaagaatcactccggccccccacctccaacctcccacctacttcgccataccgcgcgactagaacat 36227686  T
Q  149 gataccacaaaccttctctatccacttatatcctccaa 186  Q
      ||||| |||||||||||||| ||| | |||||||||    
T  36227685 tgtaccataaaccttctctatcaactaacatcctccaa 36227648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 199
Target Start/End: Original strand, 45993099 - 45993230
Alignment:
Q  67 acctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctc 166  Q
    ||||||| | |||| ||||||||||||||||||| ||||| |||||||||||  |  |||||||| |  |||||||||||   |||||| |||||  | |    
T  45993099 acctcccgccaccaagaagaacaactccggcccc-aacctccaacctcccacacacctcgccataacgggcgactaaaactctataccaaaaaccacccc 45993197  T
Q  167 tatccacttatatcctccaacatcatttcccta 199  Q
    |||||||| | ||||||||||| ||||||||||    
T  45993198 tatccactaacatcctccaacaccatttcccta 45993230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 13553846 - 13553665
Alignment:
Q  22 aaccaaccaccacctataccgccaacgccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccaccta 121  Q
    ||||||| ||| |||| ||| ||| | ||||| | ||||||  | ||||||||| ||||   ||||||||||||||||||||||| ||||||||| || |    
T  13553846 aaccaactaccccctacaccaccatcaccatctctaatcctccccacctccctccaccaatgagaacaactccggcccccaacctccaacctccctccaa 13553747  T
Q  122 tttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcatttccctaacaa 203  Q
      |||||||| |  ||||||| |||   ||||||||| ||| ||||||| ||  | ||||||||||| |||||  |||||||    
T  13553746 cctcgccataacgggcgactagaacactataccacaaccctactctatctaccaacatcctccaacaccatttatctaacaa 13553665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 34232220 - 34232261
Alignment:
Q  65 ctacctccctctaccacgaagaacaactccggcccccaacct 106  Q
    ||||||||||| |||| |||||||||||||||||||||||||    
T  34232220 ctacctccctccaccaagaagaacaactccggcccccaacct 34232261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 203
Target Start/End: Original strand, 46626368 - 46626481
Alignment:
Q  90 actccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacat 189  Q
    ||||||||||||||||| |||||| ||||||| ||||||||| || || ||||| ||   ||||||||||||  |||| ||||   | |||| ||||||     
T  46626368 actccggcccccaacctccaacctgccacctaattcgccatacctggcaactaagacactataccacaaaccacctctgtccaacaacatccgccaacac 46626467  T
Q  190 catttccctaacaa 203  Q
    ||||| ||||||||    
T  46626468 catttacctaacaa 46626481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 33795975 - 33795923
Alignment:
Q  66 tacctccctctaccacgaagaacaactccggcccccaacctacaacctcccac 118  Q
    |||||||| | |||||||||||| ||||||||||||| ||| |||||||||||    
T  33795975 tacctcccgccaccacgaagaaccactccggcccccaccctccaacctcccac 33795923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 235053 - 235020
Alignment:
Q  69 ctccctctaccacgaagaacaactccggccccca 102  Q
    ||||||| ||||||||||||||||||||||||||    
T  235053 ctccctccaccacgaagaacaactccggccccca 235020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 4937743 - 4937710
Alignment:
Q  69 ctccctctaccacgaagaacaactccggccccca 102  Q
    ||||||| ||||||||||||||||||||||||||    
T  4937743 ctccctccaccacgaagaacaactccggccccca 4937710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 15653299 - 15653258
Alignment:
Q  90 actccggcccccaacctacaacctcccacctatttcgccata 131  Q
    ||||||||||||||||| |||||| ||||||| |||||||||    
T  15653299 actccggcccccaacctccaacctgccacctaattcgccata 15653258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 31423127 - 31423160
Alignment:
Q  69 ctccctctaccacgaagaacaactccggccccca 102  Q
    ||||||| ||||||||||||||||||||||||||    
T  31423127 ctccctcaaccacgaagaacaactccggccccca 31423160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 17056034 - 17056102
Alignment:
Q  49 ccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctccca 117  Q
    ||||||||||| ||  | |||||| || |||||||||||  ||||||||||||||||  ||||||||||    
T  17056034 ccatcacgaatactcgccacctccttccaccacgaagaaacactccggcccccaaccaccaacctccca 17056102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 53810372 - 53810491
Alignment:
Q  75 ctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccact 174  Q
    |||||| ||||||  |||||||||||| |||| |||||||||||||| ||||||||| |   |||||||||| || |||||||||||||||||||| |||    
T  53810372 ctaccaagaagaatcactccggccccccacctccaacctcccacctacttcgccataacagacgactaaaacatggtaccacaaaccttctctatcgact 53810471  T
Q  175 tatatcctccaacatcattt 194  Q
     | ||||||||||| |||||    
T  53810472 aacatcctccaacaccattt 53810491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 90 - 203
Target Start/End: Original strand, 55299158 - 55299271
Alignment:
Q  90 actccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacat 189  Q
    ||||||||||||||||| |||||| ||||||| ||||||||| || |||||||||||  |||||||||||||  ||||||||||  | |||| ||||||     
T  55299158 actccggcccccaacctccaacctgccacctaattcgccatacctggcgactaaaacccgataccacaaaccacctctatccaccaacatccgccaacac 55299257  T
Q  190 catttccctaacaa 203  Q
    ||||| ||||||||    
T  55299258 cattttcctaacaa 55299271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 65 - 200
Target Start/End: Original strand, 19114957 - 19115092
Alignment:
Q  65 ctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttc 164  Q
    ||||||||| | |||| |||||||||||| |||||||||||| ||||||||||| || ||||||||| | ||||||||||||   |||||| || ||  |    
T  19114957 ctacctcccgccaccaagaagaacaactctggcccccaacctccaacctcccacatacttcgccataacgagcgactaaaactctataccaaaatccacc 19115056  T
Q  165 tctatccacttatatcctccaacatcatttccctaa 200  Q
     ||||||||| | | ||||||||| |||||||||||    
T  19115057 cctatccactaacaacctccaacaccatttccctaa 19115092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 52 - 199
Target Start/End: Original strand, 26694436 - 26694583
Alignment:
Q  52 tcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgat 151  Q
    |||||||||||  ||||||||| | ||||| |||||  ||||| |||||| |||| |||||||||| ||| ||||||||| |   |||||||||| ||||    
T  26694436 tcacgaatcctgcctacctcccgccaccacaaagaaacactccagccccccacctccaacctcccatctacttcgccataacggacgactaaaacctgat 26694535  T
Q  152 accacaaaccttctctatccacttatatcctccaacatcatttcccta 199  Q
    ||| ||| ||| ||||||||||| | ||||||||||| ||||| ||||    
T  26694536 accgcaaccctactctatccactaacatcctccaacaccatttaccta 26694583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 4524290 - 4524138
Alignment:
Q  20 cgaaccaaccaccacctataccgccaacgccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacc 119  Q
    ||||||| | ||| |||| ||||||| | | ||||| ||||||  ||||||||  | |||| ||||||||||||||||||||||||| ||||||||| ||    
T  4524290 cgaaccatctaccccctacaccgccatctctatcacaaatcctccctacctcctgccaccaagaagaacaactccggcccccaacctccaacctcccgcc 4524191  T
Q  120 tatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccac 173  Q
    || ||||||||| |  ||||||| ||| ||||| ||||| || |||||||||||    
T  4524190 tacttcgccata-cgggcgactagaacatgatatcacaatccatctctatccac 4524138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 23873070 - 23872957
Alignment:
Q  90 actccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacat 189  Q
    ||||||||||||||||| |||||| ||||||| ||||||||| || |||||||||||  |||||||||||||  ||||||| ||  | |||| ||||||     
T  23873070 actccggcccccaacctccaacctgccacctaattcgccatacctggcgactaaaacccgataccacaaaccacctctatctaccaacatccgccaacac 23872971  T
Q  190 catttccctaacaa 203  Q
    ||||| ||||||||    
T  23872970 cattttcctaacaa 23872957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 67 - 199
Target Start/End: Original strand, 8935597 - 8935729
Alignment:
Q  67 acctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctc 166  Q
    ||||||| | |||| ||||||||||||||||||||| ||| |||||||||||  |  |||||||| | ||||||||||||   |||||| |||||  | |    
T  8935597 acctcccgccaccaagaagaacaactccggcccccatcctccaacctcccacacacctcgccataacgagcgactaaaactctataccaaaaaccacccc 8935696  T
Q  167 tatccacttatatcctccaacatcatttcccta 199  Q
    |||||||| | ||||||||||| ||||||||||    
T  8935697 tatccactaacatcctccaacaccatttcccta 8935729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 10562952 - 10562886
Alignment:
Q  65 ctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccata 131  Q
    ||||||||||| |||| |||||||||||| |||||||||||| |||||||||||||| |||||||||    
T  10562952 ctacctccctccaccaagaagaacaactctggcccccaacctccaacctcccacctacttcgccata 10562886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 94 - 203
Target Start/End: Original strand, 20675572 - 20675681
Alignment:
Q  94 cggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcatt 193  Q
    ||||||||||||| |||||| ||||||||||||||||| || |||||||||||   ||||||||||||  |||| |||||  | |||| |||||| ||||    
T  20675572 cggcccccaacctccaacctgccacctatttcgccatacctggcgactaaaaccctataccacaaaccacctctgtccaccaacatccgccaacaccatt 20675671  T
Q  194 tccctaacaa 203  Q
    | ||||||||    
T  20675672 ttcctaacaa 20675681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 131
Target Start/End: Original strand, 42778763 - 42778825
Alignment:
Q  69 ctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccata 131  Q
    ||||||| |||| ||||||||||||||||||||||||| ||||||||| |||| |||||||||    
T  42778763 ctccctccaccaagaagaacaactccggcccccaacctccaacctcccgcctacttcgccata 42778825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 42953156 - 42953064
Alignment:
Q  22 aaccaaccaccacctataccgccaacgccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctc 114  Q
    ||||||| ||| ||||  |||||| | ||||| ||||||||  ||||||||||| |||| |||||||||||||||||||| |||| |||||||    
T  42953156 aaccaactaccccctactccgccatccccatctcgaatcctccctacctccctccaccaagaagaacaactccggccccccacctccaacctc 42953064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 20396103 - 20396169
Alignment:
Q  65 ctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccata 131  Q
    ||||||||| | |||| |||||||||||||||||||||| || |||||||||||| | |||||||||    
T  20396103 ctacctcccgccaccaagaagaacaactccggcccccaaactccaacctcccacccacttcgccata 20396169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 34975079 - 34975146
Alignment:
Q  88 caactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgatacca 155  Q
    ||||||||||||||||||| |||||||||||||| |||| |||| |   |||||||||| ||||||||    
T  34975079 caactccggcccccaaccttcaacctcccacctacttcgtcataacggacgactaaaacatgatacca 34975146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 49925884 - 49925833
Alignment:
Q  67 acctccctctaccacgaagaacaactccggcccccaacctacaacctcccac 118  Q
    ||||||| | |||| ||||||||||||||||||||||||| |||||||||||    
T  49925884 acctcccgccaccaagaagaacaactccggcccccaacctccaacctcccac 49925833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 199
Target Start/End: Original strand, 23657820 - 23657952
Alignment:
Q  67 acctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctc 166  Q
    ||||||| | |||| ||||||||||| ||||||||| ||| |||||||||||  |  |||| ||| |  |||||||||||   |||||| |||||  | |    
T  23657820 acctcccgccaccaagaagaacaacttcggcccccatcctccaacctcccacacacctcgctataacgggcgactaaaactctataccaaaaaccacccc 23657919  T
Q  167 tatccacttatatcctccaacatcatttcccta 199  Q
    |||||||| | ||||| ||||| ||||||||||    
T  23657920 tatccactaacatccttcaacaccatttcccta 23657952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 203
Target Start/End: Complemental strand, 3129565 - 3129470
Alignment:
Q  108 caacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcatttccctaacaa 203  Q
    |||||| ||||||| ||||||||| ||  | ||||||||   ||||||||||||  ||||||||||  | |||| |||||| ||||||||||||||    
T  3129565 caacctgccacctaattcgccatacctgacaactaaaaccctataccacaaaccacctctatccaccaacatccgccaacaccatttccctaacaa 3129470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 7662903 - 7662789
Alignment:
Q  90 actccggccccc-aacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaaca 188  Q
    |||||||||||| ||||| ||| || ||||||| ||||||||| ||||| ||||| ||   ||||||||||||  |||| |||||  | |||| ||||||    
T  7662903 actccggcccccgaacctccaatctgccacctaattcgccatacctagcaactaagacactataccacaaaccacctctgtccaccaacatccgccaaca 7662804  T
Q  189 tcatttccctaacaa 203  Q
     ||||| ||||||||    
T  7662803 ccatttacctaacaa 7662789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 161
Target Start/End: Complemental strand, 53486555 - 53486466
Alignment:
Q  65 ctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaacc 161  Q
    ||||||||||| |||| |||||||||||||| ||||       |||||||||||||| ||||||||| |  |||||||||||  ||||||| |||||    
T  53486555 ctacctccctccaccaagaagaacaactccgacccc-------caacctcccacctacttcgccataacgggcgactaaaactcgataccaaaaacc 53486466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 19755792 - 19755825
Alignment:
Q  69 ctccctctaccacgaagaacaactccggccccca 102  Q
    ||||||| ||||||||||||||||||||||||||    
T  19755792 ctccctccaccacgaagaacaactccggccccca 19755825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 19784014 - 19783981
Alignment:
Q  69 ctccctctaccacgaagaacaactccggccccca 102  Q
    ||||||| ||||||||||||||||||||||||||    
T  19784014 ctccctccaccacgaagaacaactccggccccca 19783981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 23642206 - 23642173
Alignment:
Q  69 ctccctctaccacgaagaacaactccggccccca 102  Q
    ||||||| ||||||||||||||||||||||||||    
T  23642206 ctccctccaccacgaagaacaactccggccccca 23642173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 23647864 - 23647831
Alignment:
Q  69 ctccctctaccacgaagaacaactccggccccca 102  Q
    ||||||| ||||||||||||||||||||||||||    
T  23647864 ctccctccaccacgaagaacaactccggccccca 23647831  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 47419329 - 47419362
Alignment:
Q  69 ctccctctaccacgaagaacaactccggccccca 102  Q
    ||||||| ||||||||||||||||||||||||||    
T  47419329 ctccctccaccacgaagaacaactccggccccca 47419362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 48312619 - 48312652
Alignment:
Q  69 ctccctctaccacgaagaacaactccggccccca 102  Q
    ||||||| ||||||||||||||||||||||||||    
T  48312619 ctccctccaccacgaagaacaactccggccccca 48312652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 13158402 - 13158339
Alignment:
Q  67 acctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccata 131  Q
    ||||||||| |||| ||||||||||||  |||||| |||| |||||||||||||  |||||||||    
T  13158402 acctccctccaccaagaagaacaactctagccccc-acctccaacctcccacctgcttcgccata 13158339  T

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Target: scaffold0029 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 134448 - 134335
Alignment:
Q  90 actccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacat 189  Q
    ||||||||||||||||| |||||| ||||||| ||||||||| || || ||||||||   |||||||||||| |||||||||||  | |||| ||||||     
T  134448 actccggcccccaacctccaacctgccacctaattcgccatacctggcaactaaaaccctataccacaaaccatctctatccaccaacatccgccaacac 134349  T
Q  190 catttccctaacaa 203  Q
    ||||||||||||||    
T  134348 catttccctaacaa 134335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 312275 - 312162
Alignment:
Q  90 actccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacat 189  Q
    ||||||||||||||||| |||||| ||||||| ||||||||| || || ||||||||   |||||||||||| |||||||||||  | |||| ||||||     
T  312275 actccggcccccaacctccaacctgccacctaattcgccatacctggcaactaaaaccctataccacaaaccatctctatccaccaacatccgccaacac 312176  T
Q  190 catttccctaacaa 203  Q
    ||||||||||||||    
T  312175 catttccctaacaa 312162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 327729 - 327616
Alignment:
Q  90 actccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacat 189  Q
    ||||||||||||||||| |||||| ||||||| ||||||||| || || ||||||||   |||||||||||| |||||||||||  | |||| ||||||     
T  327729 actccggcccccaacctccaacctgccacctaattcgccatacctggcaactaaaaccctataccacaaaccatctctatccaccaacatccgccaacac 327630  T
Q  190 catttccctaacaa 203  Q
    ||||||||||||||    
T  327629 catttccctaacaa 327616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 32352904 - 32352791
Alignment:
Q  90 actccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacat 189  Q
    ||||||||||||||||| |||||| ||||||| ||||||||| ||||||||||||||   ||||||||||||  ||||||||||  | |||| ||||||     
T  32352904 actccggcccccaacctccaacctgccacctaattcgccatacctagcgactaaaaccctataccacaaaccacctctatccaccaacatccgccaacac 32352805  T
Q  190 catttccctaacaa 203  Q
    ||||| ||||||||    
T  32352804 cattttcctaacaa 32352791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 48073025 - 48072912
Alignment:
Q  90 actccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacat 189  Q
    ||||||||||||||||| |||||| ||||||| ||||||||| ||  ||||||||||  |||||||||||||  ||||||||||  | |||| ||||||     
T  48073025 actccggcccccaacctccaacctgccacctaattcgccatacctgtcgactaaaacccgataccacaaaccacctctatccaccaacatccgccaacac 48072926  T
Q  190 catttccctaacaa 203  Q
    ||||| ||||||||    
T  48072925 cattttcctaacaa 48072912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 110 - 188
Target Start/End: Complemental strand, 34853222 - 34853144
Alignment:
Q  110 acctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaaca 188  Q
    |||||||||||| ||||||||||   ||||||||||| ||||||||||||||||||||||| ||| | |||||||||||    
T  34853222 acctcccacctacttcgccatattgggcgactaaaacatgataccacaaaccttctctatcaactaacatcctccaaca 34853144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 39430755 - 39430936
Alignment:
Q  22 aaccaaccaccacctataccgccaacgccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccaccta 121  Q
    ||||||| ||| |||| ||| ||| | ||||| | ||||||  | ||||||||| ||||  |||||||||||||||||||||||| |||||||||||| |    
T  39430755 aaccaactaccccctacaccaccatcaccatctctaatcctccccacctccctccaccaataagaacaactccggcccccaacctccaacctcccaccaa 39430854  T
Q  122 tttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcatttccctaacaa 203  Q
      |||||||| |  ||||||| |||   ||||||||| ||| ||||||| ||  | ||||||||||| || || ||||||||    
T  39430855 cctcgccataacgggcgactagaacactataccacaaccctactctatctaccaacatcctccaacaccacttacctaacaa 39430936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 199
Target Start/End: Complemental strand, 25504611 - 25504479
Alignment:
Q  67 acctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctc 166  Q
    ||||||| | |||| |||||||||||| |||||||||||| |||||||||||  |  |||||||| |  |||||||||||   |||||| |||||  | |    
T  25504611 acctcccgccaccaagaagaacaactctggcccccaacctccaacctcccacacacctcgccataacgggcgactaaaactctataccaaaaaccacccc 25504512  T
Q  167 tatccacttatatcctccaacatcatttcccta 199  Q
    |||||||| | ||||||||||| ||||||||||    
T  25504511 tatccactaacatcctccaacaccatttcccta 25504479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 159
Target Start/End: Complemental strand, 28097582 - 28097491
Alignment:
Q  67 acctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaa 159  Q
    ||||||||| |||| |||||| |||||||||||| ||||| |||||||||||||| ||||||||| |  |||||||||||  |||||||||||    
T  28097582 acctccctccaccaagaagaataactccggcccc-aacctccaacctcccacctacttcgccataacgggcgactaaaactcgataccacaaa 28097491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 26721156 - 26721220
Alignment:
Q  67 acctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccata 131  Q
    ||||||||| |||| || |||||||||||||||| ||||| |||||||||||||| |||||||||    
T  26721156 acctccctccaccaagacgaacaactccggcccctaacctccaacctcccacctacttcgccata 26721220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 49264626 - 49264445
Alignment:
Q  22 aaccaaccaccacctataccgccaacgccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccaccta 121  Q
    ||||||| ||| |||| ||| ||| | ||||| | ||||||  | ||||||||| ||||  |||||||||||||||||||||||| ||||||||| || |    
T  49264626 aaccaactaccccctacaccaccatcaccatctctaatcctccccacctccctccaccaataagaacaactccggcccccaacctccaacctccctccaa 49264527  T
Q  122 tttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcatttccctaacaa 203  Q
      |||||||| |  ||||||| |||   | ||||||| ||| ||||||| ||  | ||| ||||||| ||||| ||||||||    
T  49264526 cctcgccataacgggcgactataacactacaccacaaccctactctatctaccaacatcttccaacaccatttacctaacaa 49264445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 30110543 - 30110478
Alignment:
Q  65 ctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccata 131  Q
    ||||||||||| | || ||||||||||||| ||||| ||||| |||||||||||||| |||||||||    
T  30110543 ctacctccctccatcaagaagaacaactccagcccc-aacctccaacctcccacctacttcgccata 30110478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 20796146 - 20796238
Alignment:
Q  22 aaccaaccaccacctataccgccaacgccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctc 114  Q
    ||||||| ||| |||| ||| ||| | ||||| | ||||||  | ||||||||| ||||  |||||||||||||||||||||||| |||||||    
T  20796146 aaccaactaccccctacaccaccatcaccatctctaatcctccccacctccctccaccaataagaacaactccggcccccaacctccaacctc 20796238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 6051128 - 6051161
Alignment:
Q  69 ctccctctaccacgaagaacaactccggccccca 102  Q
    ||||||| ||||||||||||||||||||||||||    
T  6051128 ctccctccaccacgaagaacaactccggccccca 6051161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 19579960 - 19580017
Alignment:
Q  148 tgataccacaaaccttctctatccacttatatcctccaacatcatttccctaacaatg 205  Q
    ||||||||||| |||||| | |||||  | ||||||||||||||||| ||||||||||    
T  19579960 tgataccacaacccttctttgtccaccaacatcctccaacatcattttcctaacaatg 19580017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 35541574 - 35541607
Alignment:
Q  69 ctccctctaccacgaagaacaactccggccccca 102  Q
    ||||||| ||||||||||||||||||||||||||    
T  35541574 ctccctccaccacgaagaacaactccggccccca 35541607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 22191417 - 22191349
Alignment:
Q  49 ccatcacgaatcctatctacctccctctaccacgaagaacaactccggcccccaacctacaacctccca 117  Q
    ||||||||||| ||  | |||||| || |||||||||||  ||||||||||||||||  ||||||||||    
T  22191417 ccatcacgaatactcgccacctccttccaccacgaagaaacactccggcccccaaccaccaacctccca 22191349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0912 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0912
Description:

Target: scaffold0912; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 2492 - 2426
Alignment:
Q  65 ctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccata 131  Q
    ||||||||| | |||| ||||||||||||||||||||||||| |||||||||||| | |||||||||    
T  2492 ctacctcccgccaccaagaagaacaactccggcccccaacctccaacctcccacccacttcgccata 2426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 161
Target Start/End: Original strand, 8055 - 8149
Alignment:
Q  67 acctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaacc 161  Q
    ||||||||| |||| || |||||||||||||||||||||| |||||||||||||| |||| |||| |  |||||||| ||  ||||||| |||||    
T  8055 acctccctccaccaagacgaacaactccggcccccaacctccaacctcccacctacttcgtcataacgggcgactaagactcgataccaaaaacc 8149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 161
Target Start/End: Original strand, 12989 - 13083
Alignment:
Q  67 acctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaacc 161  Q
    ||||||||| |||| || |||||||||||||||||||||| |||||||||||||| |||| |||| |  |||||||| ||  ||||||| |||||    
T  12989 acctccctccaccaagacgaacaactccggcccccaacctccaacctcccacctacttcgtcataacgggcgactaagactcgataccaaaaacc 13083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 108 - 202
Target Start/End: Complemental strand, 4132 - 4038
Alignment:
Q  108 caacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacatcatttccctaaca 202  Q
    |||||| ||||||| ||||||||| || || ||||||||   |||||||||||| |||||||||||  | |||| |||||| |||||||||||||    
T  4132 caacctgccacctaattcgccatacctggcaactaaaaccctataccacaaaccatctctatccaccaacatccgccaacaccatttccctaaca 4038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 182636 - 182702
Alignment:
Q  65 ctacctccctctaccacgaagaacaactccggcccccaacctacaacctcccacctatttcgccata 131  Q
    ||||||||| | |||| |||||||||||||||||||||| || |||||||||||| | |||||||||    
T  182636 ctacctcccgccaccaagaagaacaactccggcccccaaactccaacctcccacccacttcgccata 182702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 203
Target Start/End: Original strand, 8150 - 8263
Alignment:
Q  90 actccggcccccaacctacaacctcccacctatttcgccatatctagcgactaaaacgtgataccacaaaccttctctatccacttatatcctccaacat 189  Q
    ||||||||||||||||| ||| || ||||||| ||||||||| ||||| ||||| ||   ||||||||||||  |||| |||||  | |||| ||||||     
T  8150 actccggcccccaacctccaatctgccacctaattcgccatacctagcaactaagacactataccacaaaccacctctgtccaccaacatccgccaacac 8249  T
Q  190 catttccctaacaa 203  Q
    ||||| ||||||||    
T  8250 catttacctaacaa 8263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 3777 - 3814
Alignment:
Q  69 ctccctctaccacgaagaacaactccggcccccaacct 106  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  3777 ctccctccaccacgacgaacaactccggcccccaacct 3814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 105458 - 105425
Alignment:
Q  69 ctccctctaccacgaagaacaactccggccccca 102  Q
    ||||||| ||||||||||||||||||||||||||    
T  105458 ctccctccaccacgaagaacaactccggccccca 105425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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