View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19026_low_2 (Length: 579)
Name: NF19026_low_2
Description: NF19026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19026_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 458; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 554
Target Start/End: Original strand, 10901737 - 10902290
Alignment:
| Q |
1 |
tttagtaataaaattaaatctnnnnnnnngtatgtgtgcgacagtgctttcaccttagaccgtgcttgaaaataaataaaagtgctatcaccgacaatgg |
100 |
Q |
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| T |
10901737 |
tttagtaataaaattaaatctaaaaaaaagtatgtgtgcgacagtgctttcaccgtagaccgtgcttgaaaataaataaaagtgctatcaccgacaatgg |
10901836 |
T |
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| Q |
101 |
tgcctttaaaatcaatcttccctttgctattatacaccttcattgcacatgcttccatcttcatggtataacctttttcaagcaactgtcaaagacttat |
200 |
Q |
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| T |
10901837 |
tgcctttaaaatcaatcttccctttgctattatacaccttcattgcacatgcttccatcttcatggtataacctttttcaagcaactgtccaagacttat |
10901936 |
T |
|
| Q |
201 |
gaaattgcttctcatagttgggacataaagcatatccaagatgaatgattttgtaccatcattccttcgtatcttaacctttctaatcccttttgcgtta |
300 |
Q |
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| T |
10901937 |
gagattgcttctcatagttgggacataaagcatatccaagatgaatgattctgtaccatcattccttcgaatcttaacctttctaatcccttttgcgtta |
10902036 |
T |
|
| Q |
301 |
accataatgttgcatgcaaattttatctttcccttaactgactcgtttagattaatataaaaccaaattttcttgccactcatgtgatttgagaaacctg |
400 |
Q |
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| T |
10902037 |
accataatgttgtatgcaaatcttatctttctcttaactgactcatttagattaatataaaaccaatttttcttgccactcatgtgatttgagaaacctg |
10902136 |
T |
|
| Q |
401 |
tatgcaaataccattggtcatcatcttcacctttgatagtagccatcaataaaactccatcagcatcagattcatcttcattgtaggaaaactgttcttc |
500 |
Q |
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| T |
10902137 |
tatccaaataccatcggtcataatcttcacctttgatagtagccattaataaaactccaccagcatcagattcatcttcattgtaggaaaactgttcttc |
10902236 |
T |
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| Q |
501 |
atctgctctatctcttgcaaccttcttagacttggattcagctgcaaattgacc |
554 |
Q |
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| T |
10902237 |
atctgctctatctcttgcaaccttcttagacttgaagtcagctgcaaaatgacc |
10902290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 145 - 308
Target Start/End: Original strand, 10908757 - 10908920
Alignment:
| Q |
145 |
gcacatgcttccatcttcatggtataacctttttcaagcaactgtcaaagacttatgaaattgcttctcatagttgggacataaagcatatccaagatga |
244 |
Q |
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| T |
10908757 |
gcacatgcttccatcttcatggtataacctttttcaagcaactgtccaagacttatgagattgcttctcatagttgggacaaaaagcatatctgagatga |
10908856 |
T |
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| Q |
245 |
atgattttgtaccatcattccttcgtatcttaacctttctaatcccttttgcgttaaccataat |
308 |
Q |
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| T |
10908857 |
atgattctataccatcattccttcgaatcttaacctttctgatcccttttgcgttaaccataat |
10908920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 304 - 454
Target Start/End: Original strand, 10911536 - 10911686
Alignment:
| Q |
304 |
ataatgttgcatgcaaattttatctttcccttaactgactcgtttagattaatataaaaccaaattttcttgccactcatgtgatttgagaaacctgtat |
403 |
Q |
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| T |
10911536 |
ataatgttgtatgaaaatcctatctttctcttagatgactcttttagattaatataaaaccaatttttcttgccactcatgtgatttgagcaacctgtat |
10911635 |
T |
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| Q |
404 |
gcaaataccattggtcatcatcttcacctttgatagtagccatcaataaaa |
454 |
Q |
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| T |
10911636 |
ccaaataccattgttcatcatcctcacctttgatagcagccatcagtaaaa |
10911686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 10908695 - 10908756
Alignment:
| Q |
62 |
gtgcttgaaaataaataaaagtgctatcacc--gacaatggtgcctttaaaatcaatcttcc |
121 |
Q |
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| T |
10908695 |
gtgcttgaaaataaataaaagcgctatcaccttgacaatggtgccttcaaaatcaatcttcc |
10908756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 431 - 522
Target Start/End: Complemental strand, 20694226 - 20694135
Alignment:
| Q |
431 |
ctttgatagtagccatcaataaaactccatcagcatcagattcatcttcattgtaggaaaactgttcttcatctgctctatctcttgcaacc |
522 |
Q |
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| T |
20694226 |
ctttgatagtagccatctgtagaacttcatctgcgtcaaattcatcttcattgtagccaaaatgcacttcatctgctctatcccttgcaacc |
20694135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 216
Target Start/End: Complemental strand, 20694644 - 20694578
Alignment:
| Q |
150 |
tgcttccatcttcatggtataacctttttcaagcaactgtcaaagacttatgaaattgcttctcata |
216 |
Q |
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| T |
20694644 |
tgcttccatctttatggaataacctttcccaagcaactatccaagacttatgagtttgcttctcata |
20694578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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