View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19026_low_22 (Length: 296)
Name: NF19026_low_22
Description: NF19026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19026_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 4 - 292
Target Start/End: Complemental strand, 32984423 - 32984135
Alignment:
| Q |
4 |
ccatttacaccaatgtctactcttgccgcagggacatcgagtccattgagacttggtaattcaatgacagatactttggttaattttacattaaattctt |
103 |
Q |
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| T |
32984423 |
ccatttacaccaatatctactcttgccgcagagacatcgagtccattgagacttggtaattcaatgacagatactttggttaattttacattaaattcgt |
32984324 |
T |
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| Q |
104 |
tgattaagtttccaggtacaaagccagagaacacaaaatcatccactgttggtgatttgcatggatagcctgaaggggtgtctggattgttgagcaagta |
203 |
Q |
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| T |
32984323 |
tgattaagtttccaggtacaaagccagagaacacaaaatcatccactgttggtgatttgcatggatagcctgaaggggtgtctggattgttgagcaagtt |
32984224 |
T |
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| Q |
204 |
tgctacacagaaatcattggcagaagaagaaacatgtgaggtatatgatgagaggagaacaaaaaagaaaacaataatgtgattcatct |
292 |
Q |
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| T |
32984223 |
tgctacacagaaatcattggcagaagaagaaacatgtgaggtatatgatgagaggagaacaaaaaagaaaacaataatgtgattcatct |
32984135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 12 - 292
Target Start/End: Complemental strand, 6521518 - 6521232
Alignment:
| Q |
12 |
accaatgtctactcttgccgcagggacatcgagtccattgagacttggtaattcaatgacagatactttggttaattttacattaaattctttgattaag |
111 |
Q |
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| T |
6521518 |
accaatgtctactcttgctgcagatatatcaagtccattgagacttggtaattcagttactgatgctttggctaatttaacattaaaagctttgtttaag |
6521419 |
T |
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| Q |
112 |
tttccaggtacaaagccagagaacacaaaatcatccactgttggtgatttgcatggatagcctgaaggggtgtctggattgttgagcaagtatgctacac |
211 |
Q |
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| T |
6521418 |
cttccaggtccaaagccagataacacgaaatcattcaccgttggtgatttgcatggatagcctgaaggggtgtctggagttttgtgtaggtttgctacac |
6521319 |
T |
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| Q |
212 |
agaaatcattggcagaagaagaaacatgtgaggtatatgatga------gaggagaacaaaaaagaaaacaataatgtgattcatct |
292 |
Q |
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| T |
6521318 |
agaaatcattggcagaagaagaaacatggaaggtgtatgatgatgatatgaggagagcaaaaaagaaaataataatgtgattcatct |
6521232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 290
Target Start/End: Original strand, 2345522 - 2345571
Alignment:
| Q |
241 |
gaggtatatgatgagaggagaacaaaaaagaaaacaataatgtgattcat |
290 |
Q |
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| T |
2345522 |
gaggtatatgatgagagaagaacaaaaaagaaaagaatagtgtgaatcat |
2345571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 2345400 - 2345480
Alignment:
| Q |
113 |
ttccaggtacaaagccagagaacacaaaatcatccactgttgg---------tgatttgcatggatagcctgaaggggtgt |
184 |
Q |
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| T |
2345400 |
ttccaggtactaagccagagaacacaaaatcattcactgttacatttgtttctgatttgcatggatagcctgaaggggtgt |
2345480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 187
Target Start/End: Original strand, 7318561 - 7318592
Alignment:
| Q |
156 |
tgatttgcatggatagcctgaaggggtgtctg |
187 |
Q |
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| T |
7318561 |
tgatttgcatggatagcctgaaggggtgtctg |
7318592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 146
Target Start/End: Complemental strand, 7321925 - 7321892
Alignment:
| Q |
113 |
ttccaggtacaaagccagagaacacaaaatcatc |
146 |
Q |
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| T |
7321925 |
ttccgggtacaaagccagagaacacaaaatcatc |
7321892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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