View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19026_low_24 (Length: 265)
Name: NF19026_low_24
Description: NF19026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19026_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 25168472 - 25168218
Alignment:
| Q |
1 |
tgctgaacgagctacagactttatgtttggatggtaagttcattaaaaagataaagcttatataattataccatccaaattaacacaattaaggagatat |
100 |
Q |
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| T |
25168472 |
tgctgaacgagctacagactttatgtttggatggtaagttcattacaaagataaaacttatataattataccatccaaattaacacaattaaggagattt |
25168373 |
T |
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| Q |
101 |
atatgataacttattcgatttctttgtttaattataggtttatggatcccttggccaatggagattatcctaaaaccatgagagcattagtcagaacaag |
200 |
Q |
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| T |
25168372 |
atatgataacttattcaatttctttgtttaattataggtttatggatcccttggccaatggagattatccaaaaaccatgagagcattagtcagaacaag |
25168273 |
T |
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| Q |
201 |
gttaccaaagtttacaaaagagcaatctaagctagtgagtggttcatatgatttt |
255 |
Q |
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| T |
25168272 |
gttaccaaagtttacaaaagagcaatctaagctagtgagtggttcatttgatttt |
25168218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 25252794 - 25253048
Alignment:
| Q |
1 |
tgctgaacgagctacagactttatgtttggatggtaagttcattaaaaagataaagcttatataattataccatccaaattaacacaattaaggagatat |
100 |
Q |
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| T |
25252794 |
tgctgaacgagctacagactttatgtttggatggtaagttcattacaaagataaaacttatataattataccatccaaattaacacaattaaggagattt |
25252893 |
T |
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| Q |
101 |
atatgataacttattcgatttctttgtttaattataggtttatggatcccttggccaatggagattatcctaaaaccatgagagcattagtcagaacaag |
200 |
Q |
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| T |
25252894 |
atatgataacttattcaatttctttgtttaattataggtttatggatcccttggccaatggagattatcctaaaaccatgagagccttagtcagatcaag |
25252993 |
T |
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| Q |
201 |
gttaccaaagtttacaaaagagcaatctaagctagtgagtggttcatatgatttt |
255 |
Q |
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| T |
25252994 |
gttaccaaagtttacaaaagagcaatctaagctagtgagtggttcatttgatttt |
25253048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 97 - 255
Target Start/End: Complemental strand, 25180041 - 25179883
Alignment:
| Q |
97 |
atatatatgataacttattcgatttctttgtttaattataggtttatggatcccttggccaatggagattatcctaaaaccatgagagcattagtcagaa |
196 |
Q |
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| T |
25180041 |
atatatatgataacttattccatttctatatataattataggtttatggatcccttggtcaatggagattatccaaaaaccatgagagccttggttagat |
25179942 |
T |
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| Q |
197 |
caaggttaccaaagtttacaaaagagcaatctaagctagtgagtggttcatatgatttt |
255 |
Q |
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| T |
25179941 |
caaggttaccaaagtttacaaaagagcaatctaagcaagtcagtggttcatttgatttt |
25179883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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