View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19026_low_27 (Length: 250)
Name: NF19026_low_27
Description: NF19026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19026_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 7809383 - 7809188
Alignment:
| Q |
1 |
caaagcttgtcatatactatgaccattttaaggtcgctctcaagttcaatttaacatttgcatcaaatctttaaataattatattcgaagtgtatcagac |
100 |
Q |
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| T |
7809383 |
caaagtttgttatacactatgaccattttaaggtcgctctcaagttcaacttaacatttgcatcaaatctttaaataattatattcgaagcgtgtcagac |
7809284 |
T |
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| Q |
101 |
actaaatacaaatacatcttcagccaaaattcgaaaattgattcctcacattatttgagtataacccactagtcccaaccacaattgttattaaca |
196 |
Q |
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| T |
7809283 |
actaaatataaatacatcttcagccaaaattcgaatattgattcctcacattatttgagtataacccactagtcccaaccacaattgttattaaca |
7809188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 212 - 243
Target Start/End: Complemental strand, 7809185 - 7809154
Alignment:
| Q |
212 |
cttaaactaagaatcattccattttcatctca |
243 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
7809185 |
cttaaactaagaatcattccattttcatctca |
7809154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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