View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19026_low_28 (Length: 247)
Name: NF19026_low_28
Description: NF19026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19026_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 25252645 - 25252420
Alignment:
| Q |
1 |
aataaggttctgttccagaatcaccaccggtacaatttggattcaaccaagaagagcatcggcccggtgccatttcaccatttgcatacccatcttgact |
100 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
25252645 |
aataaggttctgttccagaatcaccgccggtgcaatttggattcaaccaagaagagcatcgtcctggtgccatttcaccatttgcatacccatcttgact |
25252546 |
T |
|
| Q |
101 |
gtaagtccatggttcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcataatcttggaaatcttttctgtagttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || |||||||||||||| |
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| T |
25252545 |
gtaagtccatggttcattcaaagttatccaatgttttactctatctccaaatgttttgaagcaaagttccgcatagtcttgaaagtcttttctgtagttg |
25252446 |
T |
|
| Q |
201 |
aaagcatgtaaagatgaatgagaaac |
226 |
Q |
| |
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|| || ||| |||||||||||||| |
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|
| T |
25252445 |
aagatatataatgatgaatgagaaac |
25252420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 25168621 - 25168816
Alignment:
| Q |
1 |
aataaggttctgttccagaatcaccaccggtacaatttggattcaaccaagaagagcatcggcccggtgccatttcaccatttgcatacccatcttgact |
100 |
Q |
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|||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
25168621 |
aataaggttcagttccagaatcaccgccggtgcaatttggattcaaccaagaagagcatcgaccaggtgccatttcaccatttgcatacccatcttgact |
25168720 |
T |
|
| Q |
101 |
gtaagtccatggttcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcataatcttggaaatcttttctgta |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||| |
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| T |
25168721 |
gtaagtccatggttcattcaaagttatccaatgttttactctatctccaaatgttttgaagcaaagttccgcatagtcttgaaagtcttttctgta |
25168816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 25180289 - 25180522
Alignment:
| Q |
1 |
aataaggttctgttccagaatcaccaccggtacaatttggattcaaccaagaagagcatcggcccggtgccatttcaccatttgcatacccatcttgact |
100 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||| ||||| || ||||||||| | ||||||||||| |||| |||||| |
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| T |
25180289 |
aataaggttcggttccagaatctccaccggtgcaatttggattaaaccaagaagaacatcgacctggtgccattgcgccatttgcatatccattttgact |
25180388 |
T |
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| Q |
101 |
gtaagtccatggttcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcataatcttggaaatcttttctgtagttt |
200 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
25180389 |
gtaactccatggctcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatagtcttgaaaatcttttctgtagttg |
25180488 |
T |
|
| Q |
201 |
aaagcatgtaaagatgaatgagaaacatattcat |
234 |
Q |
| |
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| | ||| ||||||||||||||||||| ||||| |
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| T |
25180489 |
gaggtatgaaaagatgaatgagaaacattttcat |
25180522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 25160075 - 25160253
Alignment:
| Q |
16 |
cagaatcaccaccggtacaatttggattcaaccaagaagagcatcggcccggtgccatttcaccatttgcatacccatcttgactgtaagtccatggttc |
115 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||| ||||| || |||||||||||| ||||||||||| |||| ||| || || ||||||| || |
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| T |
25160075 |
cagaatcaccgccagtacaatttggattcaaccaactggagcaacgacccggtgccattcgcccatttgcatagccattttggctatagctccatggctc |
25160174 |
T |
|
| Q |
116 |
attcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcataatcttggaaatcttttctg |
194 |
Q |
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|||||||| | ||||| || |||||||| |||||| || || |||||||||||||| ||||| |||||||||||| |
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| T |
25160175 |
gttcaaagtaacccaatacttgactctatcaccaaattccttgaaacaaagttccgcatagtcttgaaaatcttttctg |
25160253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 25000851 - 25000782
Alignment:
| Q |
106 |
tccatggttcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcata |
175 |
Q |
| |
|
||||||||||||||||||| ||||||||||| || ||||| |||||| || ||||||||||| ||||| |
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| T |
25000851 |
tccatggttcattcaaagtaatccaatgtttcaccctatcgccaaattccttgaagcaaagttcagcata |
25000782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 24986312 - 24986358
Alignment:
| Q |
106 |
tccatggttcattcaaagttatccaatgttttactctatctccaaat |
152 |
Q |
| |
|
||||||||||||||||||| ||||||||||| || ||||| |||||| |
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| T |
24986312 |
tccatggttcattcaaagtaatccaatgtttcaccctatcaccaaat |
24986358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 9213870 - 9213692
Alignment:
| Q |
16 |
cagaatcaccaccggtacaatttggattcaaccaagaagagcatcggcccggtgccatttcaccatttgcatacccatcttgactgtaagtccatggttc |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||| || || || ||||||||| ||||||||||| |||| |||||||||| |||||||||| |
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| T |
9213870 |
cagaatcaccaccggtgcaatttggattcaaccaactagaacaacgacctggtgccattcgtccatttgcatagccattttgactgtaactccatggttc |
9213771 |
T |
|
| Q |
116 |
attcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcataatcttggaaatcttttctg |
194 |
Q |
| |
|
||||||||| | ||||| ||| || ||||| ||||| |||||||||||||| ||||| |||||||||||||||||| |
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|
| T |
9213770 |
attcaaagtaacccaatatttcaccctatcaccaaactccttaaagcaaagttcagcatagtcttggaaatcttttctg |
9213692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 190
Target Start/End: Complemental strand, 29423029 - 29422946
Alignment:
| Q |
107 |
ccatggttcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcataatcttggaaatcttt |
190 |
Q |
| |
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|||||||||||||| || ||||||||||||||||| || || ||| |||||||||||| |||||||| ||| | |||||||| |
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| T |
29423029 |
ccatggttcattcagtgtgatccaatgttttactctgtccccgaattctttaaagcaaagctccgcatagtctcgaaaatcttt |
29422946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 187
Target Start/End: Original strand, 29460042 - 29460124
Alignment:
| Q |
105 |
gtccatggttcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcataatcttggaaatc |
187 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||| |||||||||||| |||||| ||||| || |||| ||||| ||||| |
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|
| T |
29460042 |
gtccatggttcattcaatgtgatccaatgctttaccctatctccaaattctttaaaacaaagctctacatagtcttgaaaatc |
29460124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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