View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19026_low_3 (Length: 564)
Name: NF19026_low_3
Description: NF19026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19026_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 19094866 - 19095131
Alignment:
| Q |
19 |
ctgattgcacaacatgtggcttgtagcatgcatcacgcttcttcctgtggctgactcatctataattcttctttccttatcccatttcgcctcatcgaaa |
118 |
Q |
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| T |
19094866 |
ctgattgcacaacatgtggcttgtagcatgcatcactcttcttctagtggctgactcatctataattcttctttccttatcccattttgcctcatcgaaa |
19094965 |
T |
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| Q |
119 |
cattcatagtgattatatatgctaagaaatcacttttaatattcttgtcaaaagtataacacacgaccacgaaattgtctagtttgaatgatttgacatg |
218 |
Q |
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| T |
19094966 |
cgttcatagtgattatatatcctaagaaatcacttttaatattcttgtcaaaagtata--acacgaccacgaaattgtctagtttgaatgatttgacatg |
19095063 |
T |
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| Q |
219 |
tttcaaggtcttgttttcatttttcttgtcccttgcgtgtccattggtttatttacaaatactcaacc |
286 |
Q |
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| T |
19095064 |
tttcaaggtcttgttttcatttttcttgtcccttgcgtgtccattggtttatttacaaatactcaacc |
19095131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 313 - 553
Target Start/End: Original strand, 19095164 - 19095404
Alignment:
| Q |
313 |
aagatttaaaactatctcctaaatgatgctaaaacaactatatgacaaactattatctaatctccatagttgaactttttccttgtctttaagcaacgaa |
412 |
Q |
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| T |
19095164 |
aagatttaaaactatctcctaaatgaagctaaaacaactatatgacaaactatcatctaagctccatagttgaaatttttccttgtctttaagcaacgaa |
19095263 |
T |
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| Q |
413 |
cttgtaaaatagaattctacaacaaaataacaagtctcactgaaatataagaacaataaaaattctttacctgatctggtaatggatcatcgacatttga |
512 |
Q |
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| T |
19095264 |
cttgtaaaatagaattctacaacaaaataacaagtctcactgaaatataagaacaataaaaattctttacctgatctggtaatggaccaccgacatttga |
19095363 |
T |
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| Q |
513 |
tgcattcttttacttaaagactctgattctccagacttcat |
553 |
Q |
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| T |
19095364 |
tgcattcttttacttaaagactctgattctccagacttcat |
19095404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 9830135 - 9830062
Alignment:
| Q |
45 |
catgcatcacgcttcttcctgtggctgactcatctataattcttctttccttatcccatttcgcctcatcgaaa |
118 |
Q |
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| T |
9830135 |
catgcatcacgcttcttccaatggttgactcatttgtgatgcttcattccttatcgcatttcgcctcaccgaaa |
9830062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 23055241 - 23055205
Alignment:
| Q |
191 |
aattgtctagtttgaatgatttgacatgtttcaaggt |
227 |
Q |
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| T |
23055241 |
aattatctggtttgaatgatttgacatgtttcaaggt |
23055205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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