View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19026_low_30 (Length: 245)
Name: NF19026_low_30
Description: NF19026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19026_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 9 - 231
Target Start/End: Original strand, 2921549 - 2921785
Alignment:
| Q |
9 |
acatcatcaacagaaaaaggctaaatttatattccatgttctccatatcatttctttacacaatat--------------atatatcttttgttttactg |
94 |
Q |
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| T |
2921549 |
acataatcaacagaaaaaggctaaatttatattccatgttctccatatcatttctttacacaatatatatatatatatatatatatcttttgttttactg |
2921648 |
T |
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| Q |
95 |
gttaaaaattaaattttgaggaaaatgcaataaacatcatttgtaaatataatttcctacttaaaaaagtactcagcaaagttttagttatattcctgac |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2921649 |
gttaaaaattaaattttgaggaaaatgcaataaacatcatttgtaaatataatttcctacttaaaaaagtactcagcaaagttttagttatattcctgac |
2921748 |
T |
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| Q |
195 |
aaatttggaaattggagaaataacaagagaatatttt |
231 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
2921749 |
aaatttggaaattggagaaataacaagagaatatttt |
2921785 |
T |
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