View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19026_low_4 (Length: 561)
Name: NF19026_low_4
Description: NF19026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19026_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 377
Target Start/End: Complemental strand, 7809864 - 7809503
Alignment:
| Q |
19 |
cgtaagatatttgtatttccattgttttataacactcattcaacatgttttctccctatctctcttttctaactgtatta---tcaatatatcacattat |
115 |
Q |
| |
|
|||||||| |||||||| | ||||||||||||||||||||||||||||||||||| | ||||| |||||| || |||||| |||||||||||||||| |
|
|
| T |
7809864 |
cgtaagatgtttgtattccaattgttttataacactcattcaacatgttttctccttttctcttttttctcaccgtattactatcaatatatcacattaa |
7809765 |
T |
|
| Q |
116 |
actcgcttttctttctcttaaagtgtttgtatgtggaagagtgttgtaaaactattgagatacgaagtggtcaaaactagataacaattcaagnnnnnnn |
215 |
Q |
| |
|
||| |||||||| ||||||||| ||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
7809764 |
acttgcttttctctctcttaaattgtttgtatgtgggagagtgttgtaaaacttttgagatacgaaatggtcaaaactaggtaacaattcaagttttttt |
7809665 |
T |
|
| Q |
216 |
gcgaaaaaagataacctcatttactgataaactatattgtccaataaaggatcgtatcgtttacaagtccaatataaggtagagataaatttatttaata |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7809664 |
acgaaaaaagataacctcatttactgataaattatattgtccaataaaggatcgtatcgtttacaagtccaatataaggtagagataaattaatttaata |
7809565 |
T |
|
| Q |
316 |
gacttgaaaatgatgtaaaatggctaataaatggtcaaattgttttacatggaaaaatagaa |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7809564 |
gacttgaaaatgatgtaaaatggctaataaatggtcaaattgttttacatggacaaatagaa |
7809503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University