View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19026_low_5 (Length: 535)
Name: NF19026_low_5
Description: NF19026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19026_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 10 - 521
Target Start/End: Original strand, 46927496 - 46928005
Alignment:
| Q |
10 |
attattctaaaagattcacaagttctagttaatatatggactatttgtagggatgctaacttgtgggagaatccaacattgttctctccagaaaggtttt |
109 |
Q |
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||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46927496 |
attattccaaaagattcacaagtactagttaatgtatggactatttgtagggatgctaacttgtgggagaatccaacattgttctctccagaaaggtttt |
46927595 |
T |
|
| Q |
110 |
tagggtctgatattgatattgatgtcaaaggaaggaattatgagcttgtgccattcggtggtggtaggagaatttgtcctggtttgcaattggctaatag |
209 |
Q |
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||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46927596 |
tagggtctgat------attgatgtcaaaggaaggaattttgagcttgtgccattcggtggtggtaggagaatttgtcctggtttgcaattggctaatag |
46927689 |
T |
|
| Q |
210 |
gatgttattgttaatgttgggttcattagttaactcttttgattgggagcttgaaggtggcatgaaaccagaagatatggatatggatgataaatttgga |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46927690 |
gatgttattgttaatgttgggttcattagttaactcttttgattgggagcttgaaggtggcatgaaaccagaagatatggatatggatgataaatttgga |
46927789 |
T |
|
| Q |
310 |
cttactcttcaaaaagccaaaccccttcgaattcttcctctccctccaattaattaaccaagggtatcatgttatacttatttagccacctttggataaa |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
46927790 |
cttactcttcaaaaagccaaaccccttcgaattcttcctctccctccaattaattaactaagggtatcatgttatacttatttagccacctttggattaa |
46927889 |
T |
|
| Q |
410 |
gttcatttcatattctttattgtaaaatgt-----aagaaaataagaacatttgttaataaatatcactccggtccttttctaatacaatattaacagta |
504 |
Q |
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| T |
46927890 |
gttcatttcatattctttattgt-aaatgtaagaaaagaaaataagaacattttttaataaataccactccggtccttttctaatacaatattaacagta |
46927988 |
T |
|
| Q |
505 |
taataaaagtagatggt |
521 |
Q |
| |
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||||||||||||||||| |
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| T |
46927989 |
taataaaagtagatggt |
46928005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 12 - 351
Target Start/End: Complemental strand, 11106574 - 11106241
Alignment:
| Q |
12 |
tattctaaaagattcacaagttctagttaatatatggactatttgtagggatgctaacttgtgggagaatccaacattgttctctccagaaaggttttta |
111 |
Q |
| |
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||||| ||||||| ||||||| ||||||||||| ||||| ||||||| |||| | | ||||||||||||||||| ||||||||||||||||||||| | |
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| T |
11106574 |
tattccaaaagatgcacaagtgctagttaatatgtggacaatttgtaaggatccaacattgtgggagaatccaactttgttctctccagaaaggtttatg |
11106475 |
T |
|
| Q |
112 |
gggtctgatattgatattgatgtcaaaggaaggaattatgagcttgtgccattcggtggtggtaggagaatttgtcctggtttgcaattggctaatagga |
211 |
Q |
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| T |
11106474 |
ggatcggatattgat------gtgaaaggaaggaattatgaggttgctccatttggtggtgggaggagaatttgtccaggtttgcaattggctaatagga |
11106381 |
T |
|
| Q |
212 |
tgttattgttaatgttgggttcattagttaactcttttgattgggagcttgaaggtggcatgaaaccagaagatatggatatggatgataaatttggact |
311 |
Q |
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||||| ||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| | |
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| T |
11106380 |
tgttaatgttaatgttgggttcactgattaactcatttgattgggagcttgaaggtggcatgaaaccagaagatatgaacatggatgataaatttgggat |
11106281 |
T |
|
| Q |
312 |
tactcttcaaaaagccaaaccccttcgaattcttcctctc |
351 |
Q |
| |
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|||||| ||||| || |||||||||||||| |||||||| |
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| T |
11106280 |
tactctacaaaaggctcaaccccttcgaattgttcctctc |
11106241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 12 - 317
Target Start/End: Original strand, 11112912 - 11113205
Alignment:
| Q |
12 |
tattctaaaagattcacaagttctagttaatatatggactatttgtagggatgctaacttgtgggagaatccaacattgttctctccagaaaggttttta |
111 |
Q |
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||||| ||||||| ||||||| ||||||||||| ||||| ||||||| |||| | | ||||||||||||||||| ||||||||||||||||||||| | |
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| T |
11112912 |
tattccaaaagatgcacaagtgctagttaatatgtggacaatttgtaaggatccaacattgtgggagaatccaactttgttctctccagaaaggtttatg |
11113011 |
T |
|
| Q |
112 |
gggtctgatattgatattgatgtcaaaggaaggaattatgagcttgtgccattcggtggtggtaggagaatttgtcctggtttgcaattggctaatagga |
211 |
Q |
| |
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|| || ||||||||| || |||||||||||||||||| ||| ||||| |||||||| |||||| ||||||| | ||||||| | |||||||| |
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| T |
11113012 |
ggatcggatattgat------gtgaaaggaaggaattatgaggttgctccatt-ggtggtgggaggaga-tttgtccag--ttgcaatgg--taatagga |
11113099 |
T |
|
| Q |
212 |
tgttattgttaatgttgggttcattagttaactcttttgattgggagcttgaaggtggcatgaaaccagaagatatggatatggatgataaatttggact |
311 |
Q |
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||||| ||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| | |
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| T |
11113100 |
tgttaatgttaatgttgggttcactgattaactcatttgattgggagcttgaaggtggcatgaaaccagaagatatgaacatggatgataaatttgggat |
11113199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 127 - 305
Target Start/End: Original strand, 46934477 - 46934655
Alignment:
| Q |
127 |
attgatgtcaaaggaaggaattatgagcttgtgccattcggtggtggtaggagaatttgtcctggtttgcaattggctaataggatgttattgttaatgt |
226 |
Q |
| |
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|||||||||||||| |||||| ||||||||| ||||| |||| ||| | |||| || ||||| || |||||||||||||||||| | ||||||||| |
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| T |
46934477 |
attgatgtcaaaggccggaattttgagcttgtaccatttggtgctggacgacgaatatgccctggcttacaattggctaataggatgctgctgttaatgt |
46934576 |
T |
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| Q |
227 |
tgggttcattagttaactcttttgattgggagcttgaaggtggcatgaaaccagaagatatggatatggatgataaatt |
305 |
Q |
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|||| || ||||| ||||| ||||||||| |||||||||||| ||||||||||||||||||||| ||| |||||||||| |
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| T |
46934577 |
tggggtcgttagtcaactcgtttgattggaagcttgaaggtgacatgaaaccagaagatatggacatgaatgataaatt |
46934655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 166 - 315
Target Start/End: Complemental strand, 13789708 - 13789559
Alignment:
| Q |
166 |
ggtggtggtaggagaatttgtcctggtttgcaattggctaataggatgttattgttaatgttgggttcattagttaactcttttgattgggagcttgaag |
265 |
Q |
| |
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|||||||| || ||||||||||||||||| | |||||||| |||| | || || || |||||||||| || |||| | |||||||||||| |||| | |
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| T |
13789708 |
ggtggtgggagaagaatttgtcctggtttaccattggctattagggttttgtttttgatgttgggtttgtttattaattgttttgattgggaacttgtcg |
13789609 |
T |
|
| Q |
266 |
gtggcatgaaaccagaagatatggatatggatgataaatttggacttact |
315 |
Q |
| |
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|||| || ||||| || |||||| |||||||||||||||||| ||||||| |
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| T |
13789608 |
gtggaattaaacctgaggatatgaatatggatgataaatttgaacttact |
13789559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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