View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19026_low_7 (Length: 515)
Name: NF19026_low_7
Description: NF19026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19026_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 161 - 500
Target Start/End: Original strand, 29733798 - 29734146
Alignment:
| Q |
161 |
gtaagtagtgtcctttacattaccacattttccttgattcttgattggagtaactgctccacgtttcctccagtctacggtggcaggaatatcagtgaca |
260 |
Q |
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| T |
29733798 |
gtaagtggtgtcctttacattaccacattttccttgattcttgattggagtaactgctccacgtttcctccagtctacggtggcaggaatatcagtgaca |
29733897 |
T |
|
| Q |
261 |
ttttcatacttaaatgttgtt---------gttgtagtagtcctttcgaacccgtcatcggaatcctcgatgggtttatccacaaatctattaatggcaa |
351 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29733898 |
ttttcatacttaaatgttgttgttggtgttgttgtagtagtcctttcgaacccgtcatcggaatcctcgatgggtttatccacaaatctattaatggcaa |
29733997 |
T |
|
| Q |
352 |
gtttgtagggtttgttccctgcagcattgaaggaatcaatgtaggccacattgtgtttgaatatttgaaagtgttttttctgttctgcaacatccttgta |
451 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29733998 |
gtttgtagggtttgttccctgcagcattgaagtaatcaatgtaggccacattgtgtttgaatatttgaaagtgttttttctgttctgcaacatccttgta |
29734097 |
T |
|
| Q |
452 |
gacaactccatattttgtcttccagtactcgaatctttcggataatgat |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29734098 |
gacaactccatattttgtcttccagtactcgaatctttcggataatgat |
29734146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 180 - 495
Target Start/End: Complemental strand, 29746397 - 29746080
Alignment:
| Q |
180 |
ttaccacattttccttgattcttgattggagtaactgctccacgtttcctccagtctacggtggcaggaatatcagtgacattttcatacttaaatgttg |
279 |
Q |
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||||||||| || ||||||||||| |||||||||||||| |||||||||||||| |||| ||| |||||||||||||| ||||| || | || ||| | |
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| T |
29746397 |
ttaccacatcctctttgattcttgactggagtaactgctctacgtttcctccagtatacgttggtaggaatatcagtgatatttttatgcctagatgacg |
29746298 |
T |
|
| Q |
280 |
ttgttgtagtagtcctttcgaacccgtcatcgga------atcctcgatgggtttatccacaaatctattaatggcaagtttgtagggtttgttccctgc |
373 |
Q |
| |
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|| ||||||| || | |||||| ||| ||| |||||| ||||||| ||| |||||| ||||||||||||||| | ||||||||||||||| |
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| T |
29746297 |
ttcttgtagttctctt---gaacccagcatgggattgggaatcctcaatgggttggtccgcaaatccattaatggcaagtttat-gggtttgttccctgc |
29746202 |
T |
|
| Q |
374 |
agcattgaaggaatcaatgtaggccacattgtgtttgaatatttgaaagtgttttttctgttctgcaacatccttgtagacaactccatattttgtcttc |
473 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29746201 |
agcattgaaggattcaatgtagatcacattgtgtttgaatatttcgaagtgttttttcttttctgcaacatccttgtagacaactccatattttgtcttc |
29746102 |
T |
|
| Q |
474 |
cagtactcgaatctttcggata |
495 |
Q |
| |
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|||| ||||||||||| |||| |
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| T |
29746101 |
cagtgttcgaatctttcagata |
29746080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 180 - 495
Target Start/End: Original strand, 29606771 - 29607087
Alignment:
| Q |
180 |
ttaccacattttccttgattcttgattggagtaactgctccacgtttcctccagtctacggtggcaggaatatcagtgacattttcatacttaaatgttg |
279 |
Q |
| |
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||||||||| || ||||||||||| |||||||||||||| |||||||||||||||||||| || |||||||||||||| ||||| || | || ||| | |
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| T |
29606771 |
ttaccacatcctctttgattcttgactggagtaactgctctacgtttcctccagtctacggcggtaggaatatcagtgatatttttatgcctagatgacg |
29606870 |
T |
|
| Q |
280 |
ttgttgtagtagtcctttcgaacccgtcatcgga------atcctcgatgggtttatccacaaatctattaatggcaagtttgtagggtttgttccctgc |
373 |
Q |
| |
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|||||||||| || | |||||| ||| ||| ||||| ||||||| ||| |||||| ||||||||||||||| | ||||||||| ||||| |
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| T |
29606871 |
ttgttgtagttctctt---gaacccagcatgggattgggaatccttaatgggttggtccgcaaatccattaatggcaagtttat-gggtttgttgcctgc |
29606966 |
T |
|
| Q |
374 |
agcattgaaggaatcaatgtaggccacattgtgtttgaatatttgaaagtgttttttctgttctgcaacatccttgtagacaactccatattttgtcttc |
473 |
Q |
| |
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|||||| | ||| ||||||||| ||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
29606967 |
agcatttagggattcaatgtagatcacattgtgtttgaatatttggaagtgtttttttt-ttctgcaacatccttgtagacaactccatattttgtcttc |
29607065 |
T |
|
| Q |
474 |
cagtactcgaatctttcggata |
495 |
Q |
| |
|
|||| |||||||||||||||| |
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| T |
29607066 |
cagtgttcgaatctttcggata |
29607087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 167 - 477
Target Start/End: Original strand, 30056881 - 30057203
Alignment:
| Q |
167 |
agtgtcctttacattaccacattttccttgattcttgattggagtaactgctccacgtttcctccagtctacggtggcaggaatatcagtgacattttca |
266 |
Q |
| |
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|||||| |||| |||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| | |
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| T |
30056881 |
agtgtcttttatgttaccacattctctttgattcttgactggagtaactgctccacgtttcctccagtctacggcagcaggaatatcagtgatattttta |
30056980 |
T |
|
| Q |
267 |
tacttaaat---------gttgttg-ttgtagtagtcct-ttc--gaacccgtcatcggaatcctcgatgggtttatccacaaatctattaatggcaagt |
353 |
Q |
| |
|
||||||||| ||||||| || ||| |||| ||| |||||| ||||||||| |||| ||||| |||| ||||||||||||||| |||| |
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| T |
30056981 |
tacttaaataatgacgacgttgttggttcaagtt-tcctcttcttgaacccatcatcggaaggctcggtgggtagatccgcaaatctattaatggtaagt |
30057079 |
T |
|
| Q |
354 |
ttgtagggtttgttccctgcagcattgaaggaatcaatgtaggccacattgtgtttgaatatttgaaagtgttttttctgttctgcaacatccttgtaga |
453 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| | ||| |||| || |||||| |||||||||||| |
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| T |
30057080 |
ttgtaggatttgttccctgcagcattaaaggaatcaatgtaggcaacattgtgtttgaatatttggatgtgcttttcctcctctgcatcatccttgtaga |
30057179 |
T |
|
| Q |
454 |
caactccatattttgtcttccagt |
477 |
Q |
| |
|
|||| ||| ||| ||||||||| |
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| T |
30057180 |
tcactctatactttatcttccagt |
30057203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 29733625 - 29733718
Alignment:
| Q |
18 |
aaagggaaactaaatttccactagttatttgttggataccttctatcgcagccacagcagaaaatgcccagcaactacctgttattgttgttac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29733625 |
aaagggaaactaaatttccactagttattttttggataccttctatcgcagccacagcagaaaatgcccagcaactacctgttattgttgttac |
29733718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 30056689 - 30056782
Alignment:
| Q |
18 |
aaagggaaactaaatttccactagttatttgttggataccttctatcgcagccacagcagaaaatgcccagcaactacctgttattgttgttac |
111 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
30056689 |
aaagggacactaaatttccactagttatttgttggataccttctagtgcacccacagcagaaaatgcccagcaactacctgtaattattgttac |
30056782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 29746599 - 29746533
Alignment:
| Q |
26 |
actaaatttccactagttatttgttggataccttctatcgcagccacagcagaaaatgcccagcaac |
92 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||||| | |||||||||||| |||| |
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|
| T |
29746599 |
actaaatttccactggttatttgttggataccttctattgcagccaccgtagaaaatgcccaacaac |
29746533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 343 - 501
Target Start/End: Original strand, 34759144 - 34759301
Alignment:
| Q |
343 |
taatggcaagtttgtagggtttgttccctgcagcattgaaggaatcaatgtaggccacattgtgtttgaatatttgaaagtgttttttctgttctgcaac |
442 |
Q |
| |
|
||||| |||||||||| |||| ||||||||| ||||| ||| |||||| ||||||||||||||||||||||||| |||||||||| || ||| || | |
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| T |
34759144 |
taatgccaagtttgtatagttttttccctgcaatattga-ggattcaatggaggccacattgtgtttgaatatttggaagtgtttttcgtgctctacatc |
34759242 |
T |
|
| Q |
443 |
atccttgtagacaactccatattttgtcttccagtactcgaatctttcggataatgatg |
501 |
Q |
| |
|
||||||| |||| |||||||| |||| ||||| || | ||||||| | |||||||| |
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|
| T |
34759243 |
atccttgcagacctttccatattatgtcatccagagcttgtatctttctgctaatgatg |
34759301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 29606565 - 29606602
Alignment:
| Q |
26 |
actaaatttccactagttatttgttggataccttctat |
63 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
29606565 |
actaaatttccactgattatttgttggataccttctat |
29606602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 31194903 - 31194940
Alignment:
| Q |
246 |
ggaatatcagtgacattttcatacttaaatgttgttgt |
283 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||| |
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| T |
31194903 |
ggaatagcagtgacattttcatacttaaatgatgttgt |
31194940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 31176920 - 31176976
Alignment:
| Q |
41 |
gttatttgttggataccttctatcgcagccacagcagaaaatgcccagcaactacct |
97 |
Q |
| |
|
|||||||| |||||||| ||||| | |||||||| ||||||||||| ||||||||| |
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|
| T |
31176920 |
gttatttggtggataccctctatggaagccacagttgaaaatgcccaacaactacct |
31176976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 35228584 - 35228640
Alignment:
| Q |
41 |
gttatttgttggataccttctatcgcagccacagcagaaaatgcccagcaactacct |
97 |
Q |
| |
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|||||||| || ||||||||||| |||||||||| | ||||||||| ||||||||| |
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| T |
35228584 |
gttatttgatgaataccttctattgcagccacagttgcaaatgcccaacaactacct |
35228640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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