View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19027_high_3 (Length: 641)
Name: NF19027_high_3
Description: NF19027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19027_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 17 - 624
Target Start/End: Complemental strand, 31707985 - 31707378
Alignment:
| Q |
17 |
catcaacgtcacttccaagtttgatcctcaacccatgaaattgtttcccttcctccattgaagctaaacaggcacaagcatttagagcagttgccaaggt |
116 |
Q |
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| T |
31707985 |
catcaacgtcacttccaagtttgatcctcaacccatgaaattgtttcccttcctccattgaagctaaacaggcacaagcatttagagcagttgccaaggt |
31707886 |
T |
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| Q |
117 |
aaatttatttggcttgacacccannnnnnnnnnnnnngcaatgactgcaagtgccatccttggctccccccactgtaaacacccatcagccatttgagtc |
216 |
Q |
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| T |
31707885 |
aaatttatttggcttgacgcccatttttttcatttttgcaatgactgcaagtgccatccttggctccccccactgtaaacacccatcagccatttgagtc |
31707786 |
T |
|
| Q |
217 |
caagagcatacatctttatgaggaatctcatcaaatgctttgaaaccctcctccaacttttgattttttaaatacatgtcaactaaagaattccctacac |
316 |
Q |
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| T |
31707785 |
caagagcatacatctttatgaggaatctcatcaaatgctttgaaaccctcctccaacttttgattttttaaatacatgtcaactaaagaattccctacac |
31707686 |
T |
|
| Q |
317 |
aaatgtcatccccataaccactcctaacaagttgtgcatgaacttgcattcccattttaagagaggagatcgtagccaaccccgtcaaggcactagcaaa |
416 |
Q |
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| T |
31707685 |
aaatgtcatccccataaccactcctaacaagttgtgcatgaacttgcattcccattttaagagaggagatcgtagccaaccccgtcaaggcactagcaaa |
31707586 |
T |
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| Q |
417 |
agtgaactcatccggctttacaccctcacgattcatgtatctccaaaatactggaatctgttcagatgaaaactccaagtaaccccccatcatagtattc |
516 |
Q |
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| T |
31707585 |
agtgaactcatccggctttacaccctcacgattcatgtatctccaaaatactggaatctgttcagatgaaaactccaagtaaccccccatcatagtattc |
31707486 |
T |
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| Q |
517 |
catgttacagtatccctaataggacttgtctcaaatatttgcaaagcctctgtcaatttaccattcctgactaatgtagtcaaaaacgcgttaagcaaga |
616 |
Q |
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| T |
31707485 |
catgttacagtatccctaataggacttgtctcaaatatttgcaaagcctctgtcaatttaccattcctgactaatgcagtcaaaaacgcgttaagcaaga |
31707386 |
T |
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| Q |
617 |
agacatta |
624 |
Q |
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| T |
31707385 |
agacatta |
31707378 |
T |
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