View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19027_high_5 (Length: 376)
Name: NF19027_high_5
Description: NF19027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19027_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 7 - 359
Target Start/End: Complemental strand, 3447396 - 3447044
Alignment:
| Q |
7 |
ggtccttttgtgtatgaaataaagaacaaataggttcctttatgtgaattttgtaaattgaacttgatgattgacaattgttgttctattgaccctttcc |
106 |
Q |
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| T |
3447396 |
ggtccttttatgtgtgaaataaagaacaaaaaggttcctttatgtgaattttgtaaattgaacttgatgattgacaattgttgttctattgaccctttcc |
3447297 |
T |
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| Q |
107 |
aatacatacataagtttcacagtaaactaatagaagatggaggacaaatgtttggcaattgtatttgtatgaatataaaatgttttataatgaatataac |
206 |
Q |
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| T |
3447296 |
aataaatacataagtttcacagtaaactaatagaagatggaggacaaatgtttgacaattgtatttgtatgaatataaaatgttttataatgaatataac |
3447197 |
T |
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| Q |
207 |
agctgaattttgattgtttttagtgaacctgccattctaaattgtttcctgcatttgaactttttcattgctaaacagaaaccgcagtgcaaactcataa |
306 |
Q |
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| T |
3447196 |
agctgaattttgattgtttttagtgaacctgccattctaaattgtttcctgcatttgaacgttttcattgttaaacagaaaacgcagtgcaaactcataa |
3447097 |
T |
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| Q |
307 |
gcagcaaatacagcaccattcacaacaaatgctctggcaaccgcagttcctaa |
359 |
Q |
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| T |
3447096 |
gcagcaaatacagcaccattcacaacaaatgctctggcaaccgcagttcctaa |
3447044 |
T |
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