View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19027_low_1 (Length: 782)
Name: NF19027_low_1
Description: NF19027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19027_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 711; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 711; E-Value: 0
Query Start/End: Original strand, 1 - 769
Target Start/End: Complemental strand, 411529 - 410769
Alignment:
| Q |
1 |
atgcttatctgaccagtctctgatacagcactcgcgaatttggactccacattggatatctgtatctggattgactcaacaggtagctcaggagacgaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
411529 |
atgcttatctgaccagtctctgatacagcactcgcgaatttggactccacattggatatctgtatctggattgactcaacaggtagttcaggagacgaat |
411430 |
T |
|
| Q |
101 |
cgaccactactctttcctcgcttatgcgaaggcctttttgcttcgcaatgtaatcagcatttacaaggttgacaattgtgtttgatattggttcaatgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
411429 |
cgaccactactctttcctcgcttatgcgaaggcctttttgcttcgcaatgtaatcagcatttacaaggttgacaattgtgtttgatattggttcaatgat |
411330 |
T |
|
| Q |
201 |
gccttttgtgatcatggctcgaagaagtctagtgtctaggtcatcgggacccctggctgatcggtaaaccacttttacagactggattccacttcctcca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
411329 |
gccttttgtgatcatggctcgaagaagtctagtgtcaaggtcatcgggacccctggctgatcggtaaaccacttttacagactggattccacttcctccg |
411230 |
T |
|
| Q |
301 |
gataccaactgcacagctaaccttcctagcttctcagctagtacaacatatggagccagttctgataatacctgatgaaattgccaacagttatgacaga |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
411229 |
gataccaactgcacagctaaccttcctagcttctcagctagcacaacatatggagccagttctgataatacctgatgaaattgccaacagttatgacaga |
411130 |
T |
|
| Q |
401 |
aataaaatagaagaaaaagaagaacaatgcacatcaatcatagatgtcacaactcacaaatttgaccaatgtctaaactacttgtaattcaattctgatt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
411129 |
aataaaatagaagaaaaagaagaacaatgcacatcaatcatagatgtc-------acaaatttgaccaatgtctaaactacttgtaattcaattctgatt |
411037 |
T |
|
| Q |
501 |
ttcgtggaggctggctatggtctttattcgagaaaagcataataatgtcacaatgtggttgttttgtttacctcaggagcaaccataggagcattgacag |
600 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
411036 |
ttcgtggaggctggctatggtctttattcgagaaaagcataataatgtcacaatgaggttgttttgtttacctcaggagcaaccataggagcattgacag |
410937 |
T |
|
| Q |
601 |
cagttgctgaaagttcaccattcaatgcaccaacaacagcctctgctatttcaatagccacaccctcctattgagtcaaaattggtaagaaaaacaactt |
700 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
410936 |
cagttgctgaaagttcaccattcaatgcaccaacaacagcctctgctatttcaatagccacaccctcctattgagtcaaaattggtaagaaaaacaactt |
410837 |
T |
|
| Q |
701 |
ggtcaggaaataatgtgagctaaaacaaatggaagtaggatattaaagaaaaacaaaacctgtgcttct |
769 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
410836 |
ggtaaggaaataatgtgagctaaaacaaatggaagtaggatattaaagaaaaac-aaacctgtgcttct |
410769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 621 - 669
Target Start/End: Complemental strand, 48786108 - 48786060
Alignment:
| Q |
621 |
ttcaatgcaccaacaacagcctctgctatttcaatagccacaccctcct |
669 |
Q |
| |
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||||| || ||||||||||| ||||||||||||||||||||||| |||| |
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| T |
48786108 |
ttcaaagccccaacaacagcttctgctatttcaatagccacaccttcct |
48786060 |
T |
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