View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19027_low_2 (Length: 724)
Name: NF19027_low_2
Description: NF19027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19027_low_2 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 16700141 - 16699906
Alignment:
| Q |
11 |
acatcatcaaaacaacaacacaagcaaagcaagctttatttatgttagatatcttgaggatcacggacatgtggattcgataacaagataaatggatcat |
110 |
Q |
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| T |
16700141 |
acatcatcaaaacaacaacacaagcaaagcaagctttatttatgttagatatcttgaggatcacggacatgtggattcgataacaagataaatggatcat |
16700042 |
T |
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| Q |
111 |
tgcacttctctgctatgctataaaaggtatcaccttctctaacaacgtaaaattcatcacactcttttgcatcattaattttaagtagtgctgatgctat |
210 |
Q |
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| T |
16700041 |
tgcacttctctgctatgctataaaaggtatcaccttctctaacaacgtaaaattcatcacactcttttgcatcattaattttgagtagtgctgatgctat |
16699942 |
T |
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| Q |
211 |
caacactaaggtaaaagaacgtaaaacaaatactcc |
246 |
Q |
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| T |
16699941 |
caacactaaggtaaaagaacgtaaaacaaatactcc |
16699906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 508 - 709
Target Start/End: Complemental strand, 16699574 - 16699385
Alignment:
| Q |
508 |
gtcaacgaaattatgaagaaagttatgcaaattaacaaatatgattgtttagaattaatgagtttaattttattccttttttacaaataacattttagct |
607 |
Q |
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| T |
16699574 |
gtcaatgaaattatgaagaaagttatgcaaattaacaaatatgattgtttagaattaatgagtttaattttattcctttcttacaaataacattttagct |
16699475 |
T |
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| Q |
608 |
gagtttgatttgtgttcataagagtaagagaaagccaaatgcttaaatattgatccacataatatgaattgaattcttatcaacaaatcaattagtgaaa |
707 |
Q |
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| T |
16699474 |
gagtttgatttgtgttcataagagtaagag------------ttaaatattgatccacataatatgaattgaattcttatcaactaatcaattagtggaa |
16699387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 347 - 421
Target Start/End: Complemental strand, 16699735 - 16699660
Alignment:
| Q |
347 |
cttcttgactactatgacttattactttacgaagaaaaacannnnnnngactgattatgaag-aaaagctcaacaa |
421 |
Q |
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| T |
16699735 |
cttcttgactacaatgacttattactttacgaagaaaaacatttttttgactgattatgaagaaaaagctcaacaa |
16699660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 16699797 - 16699753
Alignment:
| Q |
283 |
agatgaaataaattaaataatttcttgactacaattaatccattc |
327 |
Q |
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| T |
16699797 |
agatgaaataaattaaaaaatttcttgactacaattaatccattc |
16699753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 46
Target Start/End: Complemental strand, 22846358 - 22846323
Alignment:
| Q |
11 |
acatcatcaaaacaacaacacaagcaaagcaagctt |
46 |
Q |
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| T |
22846358 |
acatcatcaaaacaacaacacatgcaaagcaagctt |
22846323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 171
Target Start/End: Complemental strand, 17322679 - 17322578
Alignment:
| Q |
70 |
atcacggacatgtggattcgataacaagataaatggatcattgcacttctctgctatgctataaaaggtatcaccttctctaacaacgtaaaattcatca |
169 |
Q |
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| T |
17322679 |
atcatggacatttggattggagaacaagatagattgatcatcacacttctccgctatactataataggtttccccttctttaaccatctaaaattcatca |
17322580 |
T |
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| Q |
170 |
ca |
171 |
Q |
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|| |
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| T |
17322579 |
ca |
17322578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 35971 - 36005
Alignment:
| Q |
11 |
acatcatcaaaacaacaacacaagcaaagcaagct |
45 |
Q |
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| T |
35971 |
acatcatcaaaacaacaacacaggcaaagcaagct |
36005 |
T |
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