View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19028_high_2 (Length: 401)
Name: NF19028_high_2
Description: NF19028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19028_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 388
Target Start/End: Complemental strand, 122949 - 122577
Alignment:
| Q |
18 |
cgaacaagcaccattacctaacaaattaaaacaatttcccacagagaaactacatttccaataaatcactttgatctccacaattccggccacctcaaac |
117 |
Q |
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| T |
122949 |
cgaacaagcaccattacctaacaaattaaaacaatttcccgcggacaaactccatttccaataaatcactttgatctctacaattccggccacctcaaac |
122850 |
T |
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| Q |
118 |
aatagtatgccaaattaaccaaaaatcttttttccactttttaattaaagcacctccgatcaaacattcaagttgaacaaaagagttcggaggggtg--a |
215 |
Q |
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| T |
122849 |
aatagtatgccaaattaaccaaaaatcttttttccactttttaattaaagcacctccgatcaaacattcaagttgaacaaaagagttcggaggggtgata |
122750 |
T |
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| Q |
216 |
taacacctatccatcaaaagattttagaccacctccatcgaagatttttaattaaatcacttctagcctccacctccatcgaagaaagatttcgaacctc |
315 |
Q |
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| T |
122749 |
taacacctatccatcaaaagattttagaccacctccatcgaagatttttaattaaatcacttctagcctccatctccatcgaagaaagatttcgaacctc |
122650 |
T |
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| Q |
316 |
tcctttgacatcaatctctttaatttcatcaactatctccaatgccctattctccaaccgtccatactcatct |
388 |
Q |
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|| ||||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||| ||||||||||||| |
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| T |
122649 |
tcttttgacatcaaactctttaatttcatcaactatccccaataccctactctccaaccatccatactcatct |
122577 |
T |
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