View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19028_low_2 (Length: 401)
Name: NF19028_low_2
Description: NF19028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19028_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 388
Target Start/End: Complemental strand, 122949 - 122577
Alignment:
| Q |
18 |
cgaacaagcaccattacctaacaaattaaaacaatttcccacagagaaactacatttccaataaatcactttgatctccacaattccggccacctcaaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | || ||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
122949 |
cgaacaagcaccattacctaacaaattaaaacaatttcccgcggacaaactccatttccaataaatcactttgatctctacaattccggccacctcaaac |
122850 |
T |
|
| Q |
118 |
aatagtatgccaaattaaccaaaaatcttttttccactttttaattaaagcacctccgatcaaacattcaagttgaacaaaagagttcggaggggtg--a |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
122849 |
aatagtatgccaaattaaccaaaaatcttttttccactttttaattaaagcacctccgatcaaacattcaagttgaacaaaagagttcggaggggtgata |
122750 |
T |
|
| Q |
216 |
taacacctatccatcaaaagattttagaccacctccatcgaagatttttaattaaatcacttctagcctccacctccatcgaagaaagatttcgaacctc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
122749 |
taacacctatccatcaaaagattttagaccacctccatcgaagatttttaattaaatcacttctagcctccatctccatcgaagaaagatttcgaacctc |
122650 |
T |
|
| Q |
316 |
tcctttgacatcaatctctttaatttcatcaactatctccaatgccctattctccaaccgtccatactcatct |
388 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||| ||||||||||||| |
|
|
| T |
122649 |
tcttttgacatcaaactctttaatttcatcaactatccccaataccctactctccaaccatccatactcatct |
122577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University