View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19028_low_3 (Length: 309)

Name: NF19028_low_3
Description: NF19028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19028_low_3
NF19028_low_3
[»] chr8 (2 HSPs)
chr8 (3-309)||(15349049-15349355)
chr8 (86-247)||(4962191-4962356)
[»] chr4 (25 HSPs)
chr4 (3-309)||(48898903-48899212)
chr4 (43-181)||(45365849-45365987)
chr4 (70-309)||(7773481-7773717)
chr4 (53-178)||(48870857-48870982)
chr4 (53-178)||(48876161-48876286)
chr4 (53-178)||(48886543-48886668)
chr4 (43-174)||(7790381-7790512)
chr4 (44-114)||(48864396-48864466)
chr4 (43-126)||(48156058-48156141)
chr4 (53-126)||(7765991-7766064)
chr4 (53-174)||(7771696-7771817)
chr4 (53-114)||(45384531-45384592)
chr4 (43-124)||(49043797-49043878)
chr4 (53-125)||(7878733-7878805)
chr4 (54-114)||(49038518-49038578)
chr4 (3-114)||(45371663-45371774)
chr4 (59-114)||(48147358-48147413)
chr4 (53-123)||(48853033-48853103)
chr4 (86-171)||(7237415-7237500)
chr4 (53-126)||(7786813-7786886)
chr4 (53-114)||(7908663-7908724)
chr4 (83-116)||(48903314-48903347)
chr4 (41-124)||(50666666-50666749)
chr4 (53-114)||(7813838-7813899)
chr4 (83-123)||(48861640-48861680)
[»] chr3 (3 HSPs)
chr3 (18-180)||(47451504-47451666)
chr3 (57-114)||(11024146-11024203)
chr3 (69-114)||(11005583-11005628)
[»] chr5 (5 HSPs)
chr5 (70-180)||(9120058-9120168)
chr5 (53-114)||(42561972-42562033)
chr5 (83-134)||(179399-179450)
chr5 (53-114)||(29688490-29688551)
chr5 (56-114)||(29712083-29712141)
[»] chr1 (2 HSPs)
chr1 (70-114)||(24310577-24310621)
chr1 (54-121)||(24416132-24416199)
[»] chr6 (2 HSPs)
chr6 (203-258)||(21979420-21979475)
chr6 (83-111)||(21979297-21979325)
[»] chr7 (1 HSPs)
chr7 (53-123)||(48884176-48884246)


Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 3 - 309
Target Start/End: Complemental strand, 15349355 - 15349049
Alignment:
Q  3 tttgtacggcacaaagggtaaaagtacagagttggattatcatcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatca 102  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349355 tttgtacggcacaaagggtaaaagtacagagttggatcatcatcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatca 15349256  T
Q  103 cccatatttcaaatctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagacccacaaaccacaatcaccagcatcatgttcaaaatc 202  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349255 cccatatttcaaagctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagacccacaaaccacaatcaccagcatcatgttcaaaatc 15349156  T
Q  203 atctggatgaggcatctcaaacagtttcctttcgtttaaatcaaatgcaacaataaagttatcacgccaaggaaaatcacgatgaaaagccaaccaatga 302  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349155 atctggaggaggcatctcaaacagtttcctttcgtttaaatcaaatgcaacaataaagttatcacgccaaggaaaatcacgatgaaaagccaaccaatga 15349056  T
Q  303 atagccc 309  Q
    |||||||    
T  15349055 atagccc 15349049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 247
Target Start/End: Original strand, 4962191 - 4962356
Alignment:
Q  86 tttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagacccacaaaccacaa-tcac- 183  Q
    ||||||||||||||||||||||||||||| ||||  |||  |||||||| |   ||| ||||| | |||||| ||||| |||||||||||| || | ||     
T  4962191 tttgtattctttcatcacccatatttcaactctacaattgcgataatccatgccccatagactgagaaattctccaaatacccacaaaccataacttaca 4962290  T
Q  184 --cagcatcatgttcaaaatcatctggatgaggcatctcaaacagtttcctttcgtttaaatcaaa 247  Q
      |||  ||||  ||||||||||  ||| |||||||||| |||| |||||||||  ||||||||||    
T  4962291 gacaggttcatagtcaaaatcattgggaagaggcatctctaacaatttcctttccattaaatcaaa 4962356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 3 - 309
Target Start/End: Complemental strand, 48899212 - 48898903
Alignment:
Q  3 tttgtacggcacaaagggtaaaagtacagagttggattatcatcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatca 102  Q
    ||||||| |||||| ||||||||||||| ||| ||| |  ||||||||  |||||||||| ||  ||||||||| || || ||||| |||||||||||||    
T  48899212 tttgtacagcacaatgggtaaaagtacatagtgggaatgccatcaataggaagaacaagagtcactgtccaagaggattttactttatattctttcatca 48899113  T
Q  103 cccatatttcaaatctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagacccacaaaccacaatcaccagcatcatgttcaaaatc 202  Q
    |||||||||||| | ||||||||| |||||  | || ||| | ||| ||||| || |||||||||||||||||||||||   || |  |||||| |||||    
T  48899112 cccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacccacaaaccacaatcctgaggaatatgttccaaatc 48899013  T
Q  203 atctggatgaggcatctcaaacagtttcctttcgtttaaatcaaatgcaacaataaagttatcacgccaagga---aaatcacgatgaaaagccaaccaa 299  Q
    ||||||| ||| |||||| ||||||||||||||  |||||||||| |||||||| |  ||||||  ||| |||   ||||||||||||||||||||||||    
T  48899012 atctggaggagacatctctaacagtttcctttccgttaaatcaaaggcaacaatgacattatcataccatggatggaaatcacgatgaaaagccaaccaa 48898913  T
Q  300 tgaatagccc 309  Q
    ||||||||||    
T  48898912 tgaatagccc 48898903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 43 - 181
Target Start/End: Original strand, 45365849 - 45365987
Alignment:
Q  43 catcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagacca 142  Q
    ||||||||  ||||||  || ||||||||||||| ||   |||||| ||||||||||||||||||||||||| | ||||||||  ||||||| ||| |||    
T  45365849 catcaataggaagaacgtgagtctttgtccaagacgaacgcactttatattctttcatcacccatatttcaactgtatcattatcataatccatagccca 45365948  T
Q  143 aagactaaaaaattcgccaaagacccacaaaccacaatc 181  Q
    || ||| |||||||| ||||| |||||||||||||||||    
T  45365949 aaaactgaaaaattctccaaatacccacaaaccacaatc 45365987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 309
Target Start/End: Original strand, 7773481 - 7773717
Alignment:
Q  70 tccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagaccca 169  Q
    ||||||| || | |||||||||||||||||||||||||||||||| | ||||||||| || |||| ||| ||| | ||||| | |||| ||||| |||||    
T  7773481 tccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaataccca 7773580  T
Q  170 caaaccacaat-cacca--gcatcatgttcaaaatcatctggatgaggcatctcaaacagtttcctttcgtttaaatcaaatgcaacaataaagttatca 266  Q
    ||||||| |||  ||||  |||  ||| | || || || |||| ||||||||||||||| |||||||||  |||||||||| | |||||| |      ||    
T  7773581 caaaccagaatgtaccaatgcactatggtgaacattatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggaaacaatta------ca 7773674  T
Q  267 cgccaaggaaaatcacgatgaaaagccaaccaatgaatagccc 309  Q
      |||| | ||||||||| | ||||||||||||||||||||||    
T  7773675 ttccaacgtaaatcacgacgcaaagccaaccaatgaatagccc 7773717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 178
Target Start/End: Complemental strand, 48870982 - 48870857
Alignment:
Q  53 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaa 152  Q
    |||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | ||| || |  ||||||| |||   | ||||| | |    
T  48870982 aagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgaga 48870883  T
Q  153 aattcgccaaagacccacaaaccaca 178  Q
    ||||| ||||| ||||||||||||||    
T  48870882 aattccccaaatacccacaaaccaca 48870857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 178
Target Start/End: Complemental strand, 48876286 - 48876161
Alignment:
Q  53 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaa 152  Q
    |||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | ||| || |  ||||||| |||   | ||||| | |    
T  48876286 aagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgaga 48876187  T
Q  153 aattcgccaaagacccacaaaccaca 178  Q
    ||||| ||||| ||||||||||||||    
T  48876186 aattccccaaatacccacaaaccaca 48876161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 178
Target Start/End: Complemental strand, 48886668 - 48886543
Alignment:
Q  53 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaa 152  Q
    |||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | ||| || |  ||||||| |||   | ||||| | |    
T  48886668 aagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgaga 48886569  T
Q  153 aattcgccaaagacccacaaaccaca 178  Q
    ||||| ||||| ||||||||||||||    
T  48886568 aattccccaaatacccacaaaccaca 48886543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 174
Target Start/End: Complemental strand, 7790512 - 7790381
Alignment:
Q  43 catcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagacca 142  Q
    ||||||||  |||||||||| | || |||||||| || | |||||||||||||||||||||||||||||||| | ||||||||  ||||||| |||  ||    
T  7790512 catcaatagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaattgtatcattatcataatccttagcgca 7790413  T
Q  143 aagactaaaaaattcgccaaagacccacaaac 174  Q
     | ||| | |||||| ||||| ||||||||||    
T  7790412 taaactgagaaattctccaaatacccacaaac 7790381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 48864466 - 48864396
Alignment:
Q  44 atcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 114  Q
    |||||||  ||||||||||||||| |||||||| || | ||||||||||||||||||||||||||||||||    
T  48864466 atcaataggaagaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 48864396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 126
Target Start/End: Original strand, 48156058 - 48156141
Alignment:
Q  43 catcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattag 126  Q
    ||||||||  ||| |||||| | || ||||||||||| | |||||||||||| ||||||||||||||||||| ||| |||||||    
T  48156058 catcaataggaaggacaagagttttagtccaagaagaatgcactttgtattcgttcatcacccatatttcaactctttcattag 48156141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 7766064 - 7765991
Alignment:
Q  53 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattag 126  Q
    |||||||||  |||| ||||| || || | |||||||||||||||||||||||||||||||| | |||||||||    
T  7766064 aagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatatttcaattgtatcattag 7765991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 174
Target Start/End: Complemental strand, 7771817 - 7771696
Alignment:
Q  53 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaa 152  Q
    |||||||||| | || ||||| || || | |||||||||||||||||||||||||||| ||| | ||||||||  ||||||| |||  || | ||| | |    
T  7771817 aagaacaagagttttagtccatgacgaatgcactttgtattctttcatcacccatattacaattgtatcattatcataatccttagcgcataaactgaga 7771718  T
Q  153 aattcgccaaagacccacaaac 174  Q
    ||||| ||||| ||||||||||    
T  7771717 aattctccaaatacccacaaac 7771696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 45384531 - 45384592
Alignment:
Q  53 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 114  Q
    ||||||| || ||||||||||||| || | |||||| |||||||||||||||||||||||||    
T  45384531 aagaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaa 45384592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 49043797 - 49043878
Alignment:
Q  43 catcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcatt 124  Q
    ||||||||  || ||||||| |||| ||||| || || | |||||||||||||||||||||||||||||||| | |||||||    
T  49043797 catcaatagaaaaaacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaactatatcatt 49043878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 7878805 - 7878733
Alignment:
Q  53 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcatta 125  Q
    |||||||||| | ||  ||||||| || | |||||||||||||||||||||||||||||||| | ||||||||    
T  7878805 aagaacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatcatta 7878733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 49038518 - 49038578
Alignment:
Q  54 agaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 114  Q
    ||||||||| |||| |||||||| || |  |||||||||||||||||||||||||||||||    
T  49038518 agaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaa 49038578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 45371663 - 45371774
Alignment:
Q  3 tttgtacggcacaaagggtaaaagtacagagttggattatcatcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatca 102  Q
    |||||||  ||||| ||| |||||||| ||||||||    |||| |||  |||||||| | |||| |||||||| || | |||||||||||||||||| |    
T  45371663 tttgtacaacacaatggggaaaagtaccgagttggaacgccatcgataggaagaacaaaagtcttagtccaagacgaatgcactttgtattctttcataa 45371762  T
Q  103 cccatatttcaa 114  Q
    ||||||||||||    
T  45371763 cccatatttcaa 45371774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 48147358 - 48147413
Alignment:
Q  59 aagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 114  Q
    |||| |||| |||||||| || | ||||||||||||||||||||||||||||||||    
T  48147358 aagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 48147413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 48853103 - 48853033
Alignment:
Q  53 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcat 123  Q
    |||||||||| |||| |||||||| ||   |||||||||||||||||| ||||||||||||| | ||||||    
T  48853103 aagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcat 48853033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 171
Target Start/End: Original strand, 7237415 - 7237500
Alignment:
Q  86 tttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagacccaca 171  Q
    ||||||||||||||||||||||||| ||| | ||||||||  |||||||  || ||| ||||| | |||||| ||||| |||||||    
T  7237415 tttgtattctttcatcacccatattacaattgtatcattatcataatcctgagcccatagactgagaaattctccaaatacccaca 7237500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 7786886 - 7786813
Alignment:
Q  53 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattag 126  Q
    |||||||||| ||||  |||||||  | | ||| |||||||||||||||||||||||||||| | |||||||||    
T  7786886 aagaacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaattgtatcattag 7786813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 7908724 - 7908663
Alignment:
Q  53 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 114  Q
    |||||||||| | ||  ||||||| || | ||||||||||||||||||||||||||||||||    
T  7908724 aagaacaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaa 7908663  T

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Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 48903347 - 48903314
Alignment:
Q  83 cactttgtattctttcatcacccatatttcaaat 116  Q
    ||||||||||||||||||||||||||||||||||    
T  48903347 cactttgtattctttcatcacccatatttcaaat 48903314  T

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Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 50666749 - 50666666
Alignment:
Q  41 atcatcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcatt 124  Q
    ||||||||| | || ||||||| | || |||||||| || | |||||||||||||| ||||||||||| ||||| | |||||||    
T  50666749 atcatcaatgtgaataacaagagttttagtccaagatgaatgcactttgtattcttacatcacccataattcaattgtatcatt 50666666  T

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Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 7813899 - 7813838
Alignment:
Q  53 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 114  Q
    |||||||||| | ||  ||||||| || | ||||||||||||||||| ||||||||||||||    
T  7813899 aagaacaagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaa 7813838  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 48861680 - 48861640
Alignment:
Q  83 cactttgtattctttcatcacccatatttcaaatctatcat 123  Q
    ||||||||||||||| || ||||||||||||||| ||||||    
T  48861680 cactttgtattcttttattacccatatttcaaatgtatcat 48861640  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 47451504 - 47451666
Alignment:
Q  18 gggtaaaagtacagagttggattatcatcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatc 117  Q
    |||||||||||| |||  ||| |  ||||||||  |||||||||| |||||  |||||| || || ||||||||||||||||||||||||||||||| |     
T  47451504 gggtaaaagtactgagagggaatgccatcaataggaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaacta 47451603  T
Q  118 tatcattaggataatccgtagaccaaagactaaaaaattcgccaaagacccacaaaccacaat 180  Q
    |||||||| || |||||  |  ||  ||||||| |||||| ||||| ||||||||||||||||    
T  47451604 tatcattatgacaatccagaacccttagactaagaaattctccaaatacccacaaaccacaat 47451666  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 11024146 - 11024203
Alignment:
Q  57 acaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 114  Q
    |||||| |||| |||||||| || | |||||||||||||||||| |||||||||||||    
T  11024146 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11024203  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 11005583 - 11005628
Alignment:
Q  69 gtccaagaagagttcactttgtattctttcatcacccatatttcaa 114  Q
    |||||||| || | |||||||||||||||||| |||||||||||||    
T  11005583 gtccaagacgaatgcactttgtattctttcataacccatatttcaa 11005628  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 180
Target Start/End: Complemental strand, 9120168 - 9120058
Alignment:
Q  70 tccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagaccca 169  Q
    ||||||| || | |||||||||||||||||||||||||||||||| | ||||||||| | ||||| ||| ||| | ||| | |||||| ||||| |||||    
T  9120168 tccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatcattagcaaaatccatagcccatatactgagaaattctccaaataccca 9120069  T
Q  170 caaaccacaat 180  Q
    || | ||||||    
T  9120068 cacatcacaat 9120058  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 42561972 - 42562033
Alignment:
Q  53 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 114  Q
    ||||||||||||||| |||||||| || | ||||||||||||||||||||||||||| ||||    
T  42561972 aagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaa 42562033  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 179450 - 179399
Alignment:
Q  83 cactttgtattctttcatcacccatatttcaaatctatcattaggataatcc 134  Q
    |||||||||||||||||||||||||||||||| | ||||||||  |||||||    
T  179450 cactttgtattctttcatcacccatatttcaactgtatcattatcataatcc 179399  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 29688551 - 29688490
Alignment:
Q  53 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 114  Q
    |||||| ||| ||||||||||||| || | ||| ||||||| ||||||||||||||||||||    
T  29688551 aagaacgagagtctttgtccaagacgattgcacattgtattttttcatcacccatatttcaa 29688490  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 29712083 - 29712141
Alignment:
Q  56 aacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 114  Q
    ||||||| |||| |||||||||||  |||| ||||||| || |||||||||||||||||    
T  29712083 aacaagagtcttagtccaagaagatgtcacattgtatttttccatcacccatatttcaa 29712141  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 24310621 - 24310577
Alignment:
Q  70 tccaagaagagttcactttgtattctttcatcacccatatttcaa 114  Q
    |||||||||| | ||||||||||||||||||||||||||| ||||    
T  24310621 tccaagaagactgcactttgtattctttcatcacccatatatcaa 24310577  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 24416199 - 24416132
Alignment:
Q  54 agaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatc 121  Q
    ||||||||| | || |||||||| || | | ||||||||||||||||||||||||| |||| ||||||    
T  24416199 agaacaagagttttagtccaagatgactgccctttgtattctttcatcacccatatatcaactctatc 24416132  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 258
Target Start/End: Original strand, 21979420 - 21979475
Alignment:
Q  203 atctggatgaggcatctcaaacagtttcctttcgtttaaatcaaatgcaacaataa 258  Q
    ||||||| |||| |||||||| |||||||||||  |||||||||| ||||||||||    
T  21979420 atctggaagagggatctcaaaaagtttcctttctattaaatcaaaggcaacaataa 21979475  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 111
Target Start/End: Original strand, 21979297 - 21979325
Alignment:
Q  83 cactttgtattctttcatcacccatattt 111  Q
    |||||||||||||||||||||||||||||    
T  21979297 cactttgtattctttcatcacccatattt 21979325  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 48884246 - 48884176
Alignment:
Q  53 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcat 123  Q
    |||||||||| |||| ||||||||    | |||||||||||||||||||||| ||||||||| | ||||||    
T  48884246 aagaacaagagtcttagtccaagacatatgcactttgtattctttcatcacctatatttcaactttatcat 48884176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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