View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19029_high_1 (Length: 571)
Name: NF19029_high_1
Description: NF19029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19029_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 524; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 16 - 555
Target Start/End: Complemental strand, 1567733 - 1567194
Alignment:
| Q |
16 |
atccacacaccaaatctttattgagataaataaaattccaaactacacataaacataataggctatgcttttaatagtgtaaactattgataagaaacag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1567733 |
atccacacaccaaatctttattgagataaataaaattccaaactacacataaacataataggctatgcttttaatagtgtaaactattgataagaaacag |
1567634 |
T |
|
| Q |
116 |
ataactgatatgaatttttgtattccttttgagaatacaatatcttcagtagagatgaattcccaattatcacggacaagcggtgcaaatactaaggccg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
1567633 |
ataactgatatgaatttttgtattccttttgagaatacaatatcttcagtagagatgaattcccaattatcacggacaagcggtgcaaatactatggctg |
1567534 |
T |
|
| Q |
216 |
aagcgatcaaaatgatgctagcagcagtccatgagaaaaaaccaacttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1567533 |
aagcgatcaaaatgatgctagcagcagtccatgagaaaaaaccaacttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagat |
1567434 |
T |
|
| Q |
316 |
tctgttgtcaacaggggggattgaactaatataaagctgccttaattgaataaagaaaacaagagggacgagtatgaccatgatgatattctcatatttt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1567433 |
tctgttgtcaacaggggggattgaactaatataaagctgccttaattgaataaagaaaacaagagggacgagtatgaccatgatgatattctcatatttt |
1567334 |
T |
|
| Q |
416 |
gccataaagttacgaccatctgatgatatctttagtatagggaagatagccaatagcaagcatagtattgtcgagaccaccgcgacaatggaagttttaa |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1567333 |
gccataaagttacgaccatctgatgatatctttagtatagggaagatagccaatagcaagcatagtattgtcgagaccaccgcgacaatggaagttttgt |
1567234 |
T |
|
| Q |
516 |
tcctacgccatgcgatgatggcagctttgcgcctactctt |
555 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1567233 |
tcctacgccatgcgatgatggcagctttgcgcctactctt |
1567194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 16 - 555
Target Start/End: Original strand, 1455612 - 1456151
Alignment:
| Q |
16 |
atccacacaccaaatctttattgagataaataaaattccaaactacacataaacataataggctatgcttttaatagtgtaaactattgataagaaacag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1455612 |
atccacacaccaaatctttattgagataaataaaattccaaactacacataaacataataggctatgcttttaatagtgtaaactattgataagaaacag |
1455711 |
T |
|
| Q |
116 |
ataactgatatgaatttttgtattccttttgagaatacaatatcttcagtagagatgaattcccaattatcacggacaagcggtgcaaatactaaggccg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1455712 |
ataactgatatgaatttttgtattccttttgagaatacaatatcttcagtagagatgaattcccaattatcacggacaagcggtgcaaatactatggccg |
1455811 |
T |
|
| Q |
216 |
aagcgatcaaaatgatgctagcagcagtccatgagaaaaaaccaacttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1455812 |
aagcgatcaaaatgatgctagcagcagtccatgagaaaaaaccaacttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagat |
1455911 |
T |
|
| Q |
316 |
tctgttgtcaacaggggggattgaactaatataaagctgccttaattgaataaagaaaacaagagggacgagtatgaccatgatgatattctcatatttt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1455912 |
tctgttgtcaacaggggggattgaactaatataaagctgccttaattgaataaagaaaacaagagggacgagtatgaccatgatgatattctcatatttt |
1456011 |
T |
|
| Q |
416 |
gccataaagttacgaccatctgatgatatctttagtatagggaagatagccaatagcaagcatagtattgtcgagaccaccgcgacaatggaagttttaa |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1456012 |
gccataaagttacgaccatctgatgatatctttagcatagggaagatagccaatagcaagcatagtattgtcgagaccacggcgacaatggaagttttgt |
1456111 |
T |
|
| Q |
516 |
tcctacgccatgcgatgatggcagctttgcgcctactctt |
555 |
Q |
| |
|
|||||||||||||| |||| ||||||| ||||||||||| |
|
|
| T |
1456112 |
tcctacgccatgcggcgatgccagctttacgcctactctt |
1456151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 27 - 555
Target Start/End: Original strand, 1460732 - 1461260
Alignment:
| Q |
27 |
aaatctttattgagataaataaaattccaaactacacataaacataataggctatgcttttaatagtgtaaactattgataagaaacagataactgatat |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1460732 |
aaatctttattgagataaataaaattccaaactacccataaacatagtagactatgcttttaatagtgtaaactattgataagaaacagataactgatac |
1460831 |
T |
|
| Q |
127 |
gaatttttgtattccttttgagaatacaatatcttcagtagagatgaattcccaattatcacggacaagcggtgcaaatactaaggccgaagcgatcaaa |
226 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||| ||||||| ||||| ||||||||| ||||| ||| | ||||||| |||||||| |
|
|
| T |
1460832 |
gaatttttgtattccctttgagaatacaatgtcttcagtagagatgacttcccaagtatcatggacaagcgatgcaattaccatggccgaaacgatcaaa |
1460931 |
T |
|
| Q |
227 |
atgatgctagcagcagtccatgagaaaaaaccaacttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagattctgttgtcaa |
326 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1460932 |
atgatgctagcagcggtccatgagaaaaaaccaacttctacgactgaaattgcatttgatagcaaaattatgaataagatcccaaagattctgttgtcaa |
1461031 |
T |
|
| Q |
327 |
caggggggattgaactaatataaagctgccttaattgaataaagaaaacaagagggacgagtatgaccatgatgatattctcatattttgccataaagtt |
426 |
Q |
| |
|
||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1461032 |
cagggctcattgaactaatatccgccagccttaattgaataaagaaaacaagagggacgagtatgaccatgatgatattctcatatttcgccataaagtt |
1461131 |
T |
|
| Q |
427 |
acgaccatctgatgatatctttagtatagggaagatagccaatagcaagcatagtattgtcgagaccaccgcgacaatggaagttttaatcctacgccat |
526 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||| |||||||| || |||||||||||||| ||||||||||| |
|
|
| T |
1461132 |
acgaccatctgatgatatctttagtacagggaagatagccaatagcaaacataatattgttgagaccacggcaacaatggaagttttgttcctacgccat |
1461231 |
T |
|
| Q |
527 |
gcgatgatggcagctttgcgcctactctt |
555 |
Q |
| |
|
| ||||||| ||||||||||| ||||||| |
|
|
| T |
1461232 |
gtgatgatgccagctttgcgcttactctt |
1461260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 27 - 522
Target Start/End: Complemental strand, 1556230 - 1555735
Alignment:
| Q |
27 |
aaatctttattgagataaataaaattccaaactacacataaacataataggctatgcttttaatagtgtaaactattgataagaaacagataactgatat |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1556230 |
aaatctttattgagataaataaaattccaaactacacataaacatagtagactatgcttttaatagtgtaaactattgataagaaacagataactgatac |
1556131 |
T |
|
| Q |
127 |
gaatttttgtattccttttgagaatacaatatcttcagtagagatgaattcccaattatcacggacaagcggtgcaaatactaaggccgaagcgatcaaa |
226 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||| ||||||| ||||| ||||||||| ||||| ||| | ||||||| |||||||| |
|
|
| T |
1556130 |
gaatttttgtattccctttgagaatacaatgtcttcagtagagatgacttcccaagtatcatggacaagcgatgcaattaccatggccgaaacgatcaaa |
1556031 |
T |
|
| Q |
227 |
atgatgctagcagcagtccatgagaaaaaaccaacttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagattctgttgtcaa |
326 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1556030 |
atgatgctagcagcggtccatgagaaaaaaccaacttctacgactgaaattgcatttgatagcaaaattatgaataagatcccaaagattctgttgtcaa |
1555931 |
T |
|
| Q |
327 |
caggggggattgaactaatataaagctgccttaattgaataaagaaaacaagagggacgagtatgaccatgatgatattctcatattttgccataaagtt |
426 |
Q |
| |
|
||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1555930 |
cagggctcattgaactaatatccgccagccttaattgaataaagaaaacaagagggacgagtatgaccatgatgatattctcatatttcgccataaagtt |
1555831 |
T |
|
| Q |
427 |
acgaccatctgatgatatctttagtatagggaagatagccaatagcaagcatagtattgtcgagaccaccgcgacaatggaagttttaatcctacg |
522 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
1555830 |
acgaccatctgatgatatctttagtacagggaagatagccaatagcaagcatagtattgtcgagaccacggcgacaatggaagttttgttcctacg |
1555735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 21 - 431
Target Start/End: Original strand, 1454097 - 1454509
Alignment:
| Q |
21 |
cacaccaaatctttattgagata--aataaaattccaaactacacataaacataataggctatgcttttaatagtgtaaactattgataagaaacagata |
118 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||| |||||||||||||| || ||| ||||||||||||||||||||| ||| || | || ||||||| |
|
|
| T |
1454097 |
cacatcaaatctttattgagatataaataaaattcgaaactacacataaatattgtagactatgcttttaatagtgtaaagtatggaaatgacacagata |
1454196 |
T |
|
| Q |
119 |
actgatatgaatttttgtattccttttgagaatacaatatcttcagtagagatgaattcccaattatcacggacaagcggtgcaaatactaaggccgaag |
218 |
Q |
| |
|
| || ||||||| | || ||||||||||||||||||| ||| ||||||||||||| || ||| | | | || |||| ||| ||| | | |||| || |
|
|
| T |
1454197 |
attgctatgaatctctgaattccttttgagaatacaacatcctcagtagagatgactttccagtgacgaatgagaagctgtggaaacatgatggcccaaa |
1454296 |
T |
|
| Q |
219 |
cgatcaaaatgatgctagcagcagtccatgagaaaaaaccaacttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagattct |
318 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||| || ||||||||||||||||| |||| | ||| || ||| ||||||||||||||||||| | |
|
|
| T |
1454297 |
agatcaaaaagatgctagcaacagtccatgagaaaatactaacttctatgactgaaactgcactaaatatcacaagcatgaataagatcccaaagacgcg |
1454396 |
T |
|
| Q |
319 |
gttgtcaacaggggggattgaactaatataaagctgccttaattgaataaagaaaacaagagggacgagtatgaccatgatgatattctcatattttgcc |
418 |
Q |
| |
|
||||||||||||| | || || | || | ||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1454397 |
gttgtcaacagggaaggttatcgcaacagaacacagcccaaattgaataaataaataaagagggacgagtatgaccatgatgatattctcatgttttgcc |
1454496 |
T |
|
| Q |
419 |
ataaagttacgac |
431 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
1454497 |
atgaagttacgac |
1454509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 401 - 491
Target Start/End: Original strand, 1430084 - 1430174
Alignment:
| Q |
401 |
atattctcatattttgccataaagttacgaccatctgatgatatctttagtatagggaagatagccaatagcaagcatagtattgtcgaga |
491 |
Q |
| |
|
||||||| |||||||||||| ||||| ||||| ||||| | ||||||| ||||||||||| |||||| ||||||||||||||| |||| |
|
|
| T |
1430084 |
atattctgatattttgccatgaagtttgcaccatatgatgttgtctttagggtagggaagataaccaataccaagcatagtattgttgaga |
1430174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 2164278 - 2164326
Alignment:
| Q |
275 |
attgcagttgatagcaaaagtatgaataagatcccaaagattctgttgt |
323 |
Q |
| |
|
|||||||||||||||| || ||||||||||| ||||||||| ||||||| |
|
|
| T |
2164278 |
attgcagttgatagcagaattatgaataagaccccaaagatgctgttgt |
2164326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 315
Target Start/End: Original strand, 2162050 - 2162105
Alignment:
| Q |
260 |
acttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagat |
315 |
Q |
| |
|
|||||||| | ||| |||||| ||||||| | |||||||||||||||||||||||| |
|
|
| T |
2162050 |
acttctataaatgatattgcacttgatagaagaagtatgaataagatcccaaagat |
2162105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 397 - 491
Target Start/End: Complemental strand, 1462990 - 1462896
Alignment:
| Q |
397 |
gatgatattctcatattttgccataaagttacgaccatctgatgatatctttagtatagggaagatagccaatagcaagcatagtattgtcgaga |
491 |
Q |
| |
|
||||||||||| ||||||| |||| |||||| |||||| | || | ||| |||| ||||||||| | |||||| |||| |||||||||| |||| |
|
|
| T |
1462990 |
gatgatattctgatatttttccatgaagttagcaccatcagttgttgtctgtagtgtagggaagaaaaccaataccaagtatagtattgttgaga |
1462896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 234 - 315
Target Start/End: Original strand, 1754131 - 1754212
Alignment:
| Q |
234 |
tagcagcagtccatgagaaaaaaccaacttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagat |
315 |
Q |
| |
|
|||||||| ||||||| | ||||| |||||| ||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
1754131 |
tagcagcaatccatgatacaaaactaacttccatgactgaaattgcacttgatagtccaagtatgaataagatcccaaagat |
1754212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 229 - 331
Target Start/End: Original strand, 1750087 - 1750189
Alignment:
| Q |
229 |
gatgctagcagcagtccatgagaaaaaaccaacttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagattctgttgtcaaca |
328 |
Q |
| |
|
|||| |||||||||||||||| ||| ||| |||||||| || |||| ||||| ||||||| ||||| ||||||||||||||||| ||||| |||| | |
|
|
| T |
1750087 |
gatgatagcagcagtccatgataaataactaacttctacgattgaagttgcacttgatagttcaagtaagaataagatcccaaagacgctgttatcaata |
1750186 |
T |
|
| Q |
329 |
ggg |
331 |
Q |
| |
|
||| |
|
|
| T |
1750187 |
ggg |
1750189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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