View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19029_high_16 (Length: 271)
Name: NF19029_high_16
Description: NF19029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19029_high_16 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 29007019 - 29006749
Alignment:
| Q |
1 |
ttgagaatttgattgtagactctttgctccttttttgttcaattagatttctcatgttatgagttcattacttttctggaagtacattttaaagaagtgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29007019 |
ttgagaatttgattgtagactctttgctccttttttgttcaattagatttctcatgttatgagttcattacttttctggaggtacattttaaagaagtgt |
29006920 |
T |
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| Q |
101 |
ttatttgagctatccattcttattaaataattgaatcaaattacaattgatgttataattttaattagccaaaaattccatgctagtctgagtggcatgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29006919 |
ttatttgagctatccattcttattaaataattgaatcaaattacaattggtgttataattttaattagccaaaaattccatgctagtctgagtggcatgt |
29006820 |
T |
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| Q |
201 |
acttgaaatggtttcatcagagcatttggataatgtgattactgatacatatctctttcagctttagtggt |
271 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29006819 |
acttgaaatggtttcatcaaagcatttggataatgtgattactgatacatatctctttcagctttagtggt |
29006749 |
T |
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