View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19029_high_22 (Length: 228)
Name: NF19029_high_22
Description: NF19029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19029_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 27640246 - 27640018
Alignment:
| Q |
1 |
tgaagagatcgtagagaagaggagtgtttctcttccaaacggagaattcttcttcaacctctgcttcgttttcgggttcgtattcttccgccatttttgt |
100 |
Q |
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| T |
27640246 |
tgaagagatcgtagagaagaggagtgtttctcttccaaacggagaattcttcttcaacctctgcttcgttttcgggttcgtattcttccgccatttttgt |
27640147 |
T |
|
| Q |
101 |
ttttctcaagaattctataccctattcgcgccaatgcttcttgagaaatgagacactggtttttatagtgacaaaaacat--acttttgc-----tggat |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
27640146 |
ttttctcaagaattctataccctattcgcgccaatgcttcttgagaaatgagacactggtttttatagtgacaaaaacatacacttttgctggattggat |
27640047 |
T |
|
| Q |
194 |
tgggctgggcttgggcttttctgtgctgc |
222 |
Q |
| |
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||||||||||||||||||||||| ||||| |
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| T |
27640046 |
tgggctgggcttgggcttttctgggctgc |
27640018 |
T |
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