View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19029_high_7 (Length: 305)

Name: NF19029_high_7
Description: NF19029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19029_high_7
NF19029_high_7
[»] chr7 (17 HSPs)
chr7 (144-289)||(9449850-9449995)
chr7 (1-47)||(12141124-12141170)
chr7 (1-47)||(28044573-28044619)
chr7 (1-47)||(37837275-37837321)
chr7 (1-47)||(39171407-39171453)
chr7 (1-44)||(40993385-40993428)
chr7 (1-47)||(8001363-8001409)
chr7 (1-44)||(45349619-45349662)
chr7 (1-47)||(34899424-34899470)
chr7 (1-47)||(42978838-42978884)
chr7 (1-47)||(48061650-48061696)
chr7 (1-44)||(9977030-9977073)
chr7 (5-47)||(28407735-28407777)
chr7 (1-47)||(47590539-47590585)
chr7 (1-39)||(19404582-19404620)
chr7 (1-46)||(24770472-24770517)
chr7 (7-47)||(39328611-39328651)
[»] chr8 (19 HSPs)
chr8 (1-47)||(16928572-16928618)
chr8 (1-47)||(7883056-7883102)
chr8 (7-47)||(23230877-23230917)
chr8 (4-47)||(40211115-40211158)
chr8 (1-47)||(40618888-40618934)
chr8 (2-47)||(28086627-28086672)
chr8 (1-44)||(9637227-9637270)
chr8 (1-44)||(41684601-41684644)
chr8 (1-47)||(24186476-24186522)
chr8 (1-47)||(25190880-25190926)
chr8 (1-47)||(30568136-30568182)
chr8 (1-47)||(31013423-31013469)
chr8 (1-47)||(33214486-33214532)
chr8 (1-47)||(45445626-45445672)
chr8 (1-46)||(17693429-17693474)
chr8 (9-46)||(37971523-37971560)
chr8 (5-47)||(8412337-8412379)
chr8 (1-47)||(27498181-27498227)
chr8 (6-47)||(29939534-29939575)
[»] chr6 (17 HSPs)
chr6 (1-47)||(3913391-3913437)
chr6 (1-47)||(21426503-21426549)
chr6 (1-47)||(32327037-32327083)
chr6 (1-47)||(606431-606477)
chr6 (1-47)||(9341468-9341514)
chr6 (1-47)||(12170695-12170741)
chr6 (1-47)||(67818-67864)
chr6 (1-47)||(30894825-30894871)
chr6 (1-47)||(14174888-14174934)
chr6 (1-47)||(14179424-14179470)
chr6 (1-47)||(23128845-23128891)
chr6 (1-47)||(30608332-30608378)
chr6 (1-47)||(33052985-33053031)
chr6 (1-46)||(29255264-29255309)
chr6 (1-44)||(34018787-34018830)
chr6 (1-47)||(7515020-7515065)
chr6 (1-47)||(29319694-29319740)
[»] chr5 (15 HSPs)
chr5 (1-47)||(9113542-9113588)
chr5 (1-44)||(34945618-34945661)
chr5 (1-47)||(6011955-6012001)
chr5 (1-47)||(24229601-24229647)
chr5 (1-47)||(38007582-38007628)
chr5 (1-47)||(38598022-38598068)
chr5 (1-47)||(13007454-13007500)
chr5 (5-47)||(14082213-14082255)
chr5 (1-47)||(14726278-14726324)
chr5 (1-47)||(25980382-25980428)
chr5 (5-47)||(1409729-1409771)
chr5 (1-47)||(8096316-8096361)
chr5 (1-47)||(26825655-26825701)
chr5 (1-47)||(35851022-35851068)
chr5 (1-47)||(13422158-13422203)
[»] chr4 (21 HSPs)
chr4 (1-47)||(56040463-56040509)
chr4 (4-47)||(32766763-32766806)
chr4 (1-47)||(2521025-2521071)
chr4 (1-47)||(13634361-13634407)
chr4 (1-47)||(19853329-19853375)
chr4 (1-47)||(21686059-21686105)
chr4 (1-47)||(24098886-24098932)
chr4 (1-47)||(26633488-26633534)
chr4 (1-47)||(48257449-48257495)
chr4 (1-47)||(10258718-10258764)
chr4 (6-47)||(17949140-17949181)
chr4 (6-47)||(17952992-17953033)
chr4 (1-36)||(35348553-35348588)
chr4 (1-47)||(4142581-4142627)
chr4 (1-47)||(43510442-43510488)
chr4 (5-39)||(21662687-21662721)
chr4 (5-39)||(21671451-21671485)
chr4 (14-44)||(22611449-22611479)
chr4 (1-39)||(26090735-26090773)
chr4 (3-47)||(10496584-10496628)
chr4 (1-29)||(54022105-54022133)
[»] chr3 (31 HSPs)
chr3 (1-47)||(21533626-21533672)
chr3 (1-47)||(43017113-43017159)
chr3 (1-47)||(45568262-45568308)
chr3 (1-47)||(54149216-54149262)
chr3 (1-47)||(6954513-6954559)
chr3 (1-47)||(44959790-44959836)
chr3 (1-47)||(52922934-52922980)
chr3 (1-47)||(9797351-9797397)
chr3 (1-47)||(9998692-9998738)
chr3 (1-47)||(10108461-10108507)
chr3 (1-47)||(36910583-36910629)
chr3 (5-47)||(40487554-40487596)
chr3 (1-47)||(48650551-48650597)
chr3 (1-47)||(21431838-21431886)
chr3 (5-45)||(4711711-4711751)
chr3 (7-47)||(43488408-43488448)
chr3 (6-45)||(32701721-32701760)
chr3 (1-47)||(10229701-10229747)
chr3 (1-47)||(33580105-33580151)
chr3 (1-47)||(36461254-36461300)
chr3 (1-47)||(38546024-38546070)
chr3 (1-47)||(46304338-46304383)
chr3 (1-47)||(47041865-47041911)
chr3 (15-47)||(38859948-38859980)
chr3 (1-44)||(31271652-31271695)
chr3 (1-47)||(7448731-7448777)
chr3 (1-47)||(7456873-7456919)
chr3 (5-47)||(10233299-10233341)
chr3 (1-39)||(37040993-37041031)
chr3 (5-47)||(40556931-40556973)
chr3 (1-29)||(20464805-20464833)
[»] chr2 (22 HSPs)
chr2 (1-47)||(11985051-11985097)
chr2 (1-47)||(31788692-31788738)
chr2 (1-47)||(4778989-4779035)
chr2 (1-47)||(5427687-5427733)
chr2 (1-47)||(31193154-31193200)
chr2 (1-47)||(36692110-36692156)
chr2 (1-47)||(36942940-36942986)
chr2 (3-47)||(1415795-1415839)
chr2 (1-47)||(1421911-1421957)
chr2 (1-47)||(18763704-18763750)
chr2 (1-47)||(33585553-33585599)
chr2 (1-47)||(35220564-35220610)
chr2 (1-47)||(38445402-38445448)
chr2 (1-47)||(4041412-4041458)
chr2 (5-47)||(12677269-12677311)
chr2 (1-47)||(29173535-29173581)
chr2 (1-47)||(33923941-33923987)
chr2 (5-47)||(37876424-37876466)
chr2 (1-44)||(7677694-7677737)
chr2 (1-47)||(7646714-7646760)
chr2 (1-47)||(9169075-9169121)
chr2 (5-47)||(25508886-25508928)
[»] chr1 (23 HSPs)
chr1 (1-47)||(4413343-4413389)
chr1 (1-47)||(11462299-11462345)
chr1 (1-47)||(29738481-29738527)
chr1 (1-47)||(35484208-35484254)
chr1 (6-47)||(7337480-7337521)
chr1 (1-47)||(21687607-21687653)
chr1 (1-47)||(26535565-26535611)
chr1 (1-47)||(44915868-44915914)
chr1 (1-47)||(49504412-49504458)
chr1 (1-46)||(8211125-8211170)
chr1 (1-47)||(10776278-10776324)
chr1 (1-47)||(16989600-16989646)
chr1 (1-47)||(23289209-23289255)
chr1 (1-47)||(32395226-32395272)
chr1 (1-47)||(34878095-34878141)
chr1 (5-44)||(940471-940510)
chr1 (1-36)||(15431494-15431529)
chr1 (8-47)||(36894225-36894264)
chr1 (1-47)||(1742516-1742562)
chr1 (1-47)||(21947435-21947481)
chr1 (1-47)||(51373675-51373721)
chr1 (12-44)||(14872879-14872911)
chr1 (7-47)||(27579945-27579985)
[»] scaffold0136 (1 HSPs)
scaffold0136 (1-47)||(9859-9905)
[»] scaffold0445 (1 HSPs)
scaffold0445 (1-44)||(1570-1613)
[»] scaffold0026 (1 HSPs)
scaffold0026 (1-47)||(71687-71733)
[»] scaffold0017 (1 HSPs)
scaffold0017 (1-47)||(32564-32610)
[»] scaffold0127 (1 HSPs)
scaffold0127 (5-49)||(15722-15766)
[»] scaffold0884 (1 HSPs)
scaffold0884 (1-47)||(1790-1836)
[»] scaffold0121 (1 HSPs)
scaffold0121 (1-47)||(31091-31137)


Alignment Details
Target: chr7 (Bit Score: 146; Significance: 6e-77; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 144 - 289
Target Start/End: Complemental strand, 9449995 - 9449850
Alignment:
Q  144 atatatgaaaaatgtgatttatcataacatgtttgatagaataagaacatgtatgtgaatggaatcacaaaaagttttaatttatctagcaatgtattat 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9449995 atatatgaaaaatgtgatttatcataacatgtttgatagaataagaacatgtatgtgaatggaatcacaaaaagttttaatttatctagcaatgtattat 9449896  T
Q  244 gcatgcctacttttttagattatattatttctgactttggcacttg 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  9449895 gcatgcctacttttttagattatattatttctgactttggcacttg 9449850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 12141170 - 12141124
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  12141170 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 12141124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 28044619 - 28044573
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  28044619 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 28044573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 37837321 - 37837275
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  37837321 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 37837275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 39171453 - 39171407
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  39171453 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 39171407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 40993385 - 40993428
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgattt 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  40993385 ttacgtttttagcgatgtttgtatctgatgtactctatcgattt 40993428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 8001409 - 8001363
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  8001409 ttacgtttttagcgatgtttgtatctgatgcactctatcgatttgaa 8001363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 45349662 - 45349619
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgattt 44  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  45349662 ttacgtttttagcgatatttgtatctgatgtactctatcgattt 45349619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 34899470 - 34899424
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||    
T  34899470 ttacgtttttagcgatgtttgtatttgatgtactctatcaatttgaa 34899424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 42978838 - 42978884
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||    
T  42978838 ttacgtttttagcgatgtttgtatctgatggactctatcaatttgaa 42978884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 48061650 - 48061696
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||    
T  48061650 ttacgtttttagagatgtttgtacctgatgtactctatcgatttgaa 48061696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 9977073 - 9977030
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgattt 44  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||    
T  9977073 ttacgtttttagcaatgtttgtatctgatgtactctatcaattt 9977030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 28407777 - 28407735
Alignment:
Q  5 gtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||| |||||||||||||| |||||||    
T  28407777 gtttttagcgatgtttgtatttgatgtactctatcaatttgaa 28407735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 47590539 - 47590585
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||| |||||||||| |||||||| |||||||||||||||||    
T  47590539 ttacgttttcagcgatgtttatatctgatatactctatcgatttgaa 47590585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 19404620 - 19404582
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatc 39  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  19404620 ttacatttttagcgatgttcgtatctgatgtactctatc 19404582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 24770472 - 24770517
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttga 46  Q
    ||||||| |||||||||||||||||||||||| | ||| |||||||    
T  24770472 ttacgttgttagcgatgtttgtatctgatgtaatttattgatttga 24770517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 39328651 - 39328611
Alignment:
Q  7 ttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||| ||||||| || |||||||||||    
T  39328651 ttttagcgatgtttgtatttgatgtaatccatcgatttgaa 39328611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 16928618 - 16928572
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  16928618 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 16928572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 7883102 - 7883056
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  7883102 ttacgtttttagcgatgtttgtatctgatgtactctattgatttgaa 7883056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 23230877 - 23230917
Alignment:
Q  7 ttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  23230877 ttttagcgatgtttgtatctgatgtactctatcgatttgaa 23230917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 40211158 - 40211115
Alignment:
Q  4 cgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  40211158 cgtttttagcgatgtttatatctgatgtactctatcgatttgaa 40211115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 40618934 - 40618888
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||    
T  40618934 ttacgtttttagcgatgtttgtatctgatgtattctatcaatttgaa 40618888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 28086672 - 28086627
Alignment:
Q  2 tacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||    
T  28086672 tacgtttttagcgatgtttgtatctgatgtactatatcaatttgaa 28086627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 9637270 - 9637227
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgattt 44  Q
    |||||||||||| |||||||||||||||||||||||||| ||||    
T  9637270 ttacgtttttagtgatgtttgtatctgatgtactctatcaattt 9637227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 41684601 - 41684644
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgattt 44  Q
    |||||||||||||||||||| |||||||||||||||||| ||||    
T  41684601 ttacgtttttagcgatgtttatatctgatgtactctatcaattt 41684644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 24186522 - 24186476
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||| |||||||||||| |||||||||||||| |||||||    
T  24186522 ttacgtttttatcgatgtttgtatatgatgtactctatctatttgaa 24186476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 25190926 - 25190880
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||| ||||||| |||||||||||||||||| ||||||||||||||    
T  25190926 ttacgattttagcaatgtttgtatctgatgtaatctatcgatttgaa 25190880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 30568182 - 30568136
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||| ||||||| |||||| |||||||    
T  30568182 ttacgtttttagcgatgtttgtatatgatgtaatctatcaatttgaa 30568136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 31013469 - 31013423
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||| |||||||||||||||||||| ||||||| ||||    
T  31013469 ttacgtttttagcaatgtttgtatctgatgtactttatcgatatgaa 31013423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 33214532 - 33214486
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||||| |||| ||||| ||||||||||||||||||||    
T  33214532 ttacgtttttagcgacgtttatatctaatgtactctatcgatttgaa 33214486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 45445672 - 45445626
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||| |||||||||||||||||||| || |||||||||||    
T  45445672 ttacgtttttaacgatgtttgtatctgatgtaatccatcgatttgaa 45445626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 17693474 - 17693429
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttga 46  Q
    |||| ||||||||||||||||||| |||||||||||||| ||||||    
T  17693474 ttacatttttagcgatgtttgtatttgatgtactctatcaatttga 17693429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 37971523 - 37971560
Alignment:
Q  9 ttagcgatgtttgtatctgatgtactctatcgatttga 46  Q
    |||||||||||||||||||||||||||||| |||||||    
T  37971523 ttagcgatgtttgtatctgatgtactctattgatttga 37971560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 8412379 - 8412337
Alignment:
Q  5 gtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||||||||||||||| || ||||| ||||||||    
T  8412379 gtttttagcgatgtttgtatctgatttaatctattgatttgaa 8412337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 27498227 - 27498181
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||| |||||  |||||||||||||||||||||||||| |||||||    
T  27498227 ttacgattttaatgatgtttgtatctgatgtactctatcaatttgaa 27498181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 29939534 - 29939575
Alignment:
Q  6 tttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||| ||||| |||||||||||||||| ||||||||||||    
T  29939534 tttttaacgatgattgtatctgatgtactatatcgatttgaa 29939575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 3913437 - 3913391
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  3913437 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 3913391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21426549 - 21426503
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21426549 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 21426503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 32327083 - 32327037
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  32327083 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 32327037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 606431 - 606477
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  606431 ttacgtttttaacgatgtttgtatctgatgtactctatcgatttgaa 606477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 9341514 - 9341468
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  9341514 ttacgtttttagcaatgtttgtatctgatgtactctatcgatttgaa 9341468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 12170695 - 12170741
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  12170695 ttacatttttagcgatgtttgtatctgatgtactctatcgatttgaa 12170741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 67864 - 67818
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||    
T  67864 ttacgtttttagcaatgtttgtatctgatatactctatcgatttgaa 67818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 30894825 - 30894871
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||||||| || |||||||||||    
T  30894825 ttacgtttttagcgatgtttgtatctgatgtattccatcgatttgaa 30894871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 14174934 - 14174888
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||| |||||||||||||||||| | ||||||||||||    
T  14174934 ttacgtttttagcaatgtttgtatctgatgtaatatatcgatttgaa 14174888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 14179470 - 14179424
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||| |||||||||||||||||| | ||||||||||||    
T  14179470 ttacgtttttagcaatgtttgtatctgatgtaatatatcgatttgaa 14179424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 23128845 - 23128891
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||| ||||||||||||||||||||||||||||||| || |||||||    
T  23128845 ttacatttttagcgatgtttgtatctgatgtactctgtctatttgaa 23128891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 30608378 - 30608332
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||| ||||||||||||||||| ||||||||| |||||||    
T  30608378 ttacgtttttaacgatgtttgtatctgatttactctatcaatttgaa 30608332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 33053031 - 33052985
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||| |||||||||| |||||||||||||| |||||||    
T  33053031 ttacgtttttagcaatgtttgtatttgatgtactctatcaatttgaa 33052985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 29255309 - 29255264
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttga 46  Q
    |||||||||||||||||||||||| |||||||||| ||| ||||||    
T  29255309 ttacgtttttagcgatgtttgtatttgatgtactccatcaatttga 29255264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 34018787 - 34018830
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgattt 44  Q
    |||||||||||||||||||||||||| || ||||||||| ||||    
T  34018787 ttacgtttttagcgatgtttgtatctaatatactctatcaattt 34018830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 7515065 - 7515020
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||| ||| ||||||||| ||||||||||||||||    
T  7515065 ttacgtttttagcgat-tttatatctgatgcactctatcgatttgaa 7515020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 29319740 - 29319694
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||||||||||||||||||| |||| |||  |||||||    
T  29319740 ttacgtttttagcgatgtttgtatctgatatactttattaatttgaa 29319694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 9113588 - 9113542
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  9113588 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 9113542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 34945618 - 34945661
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgattt 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  34945618 ttacgtttttagcgatgtttgtatctgatgtactctatcgattt 34945661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 6012001 - 6011955
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  6012001 ttacgtttttaacgatgtttgtatctgatgtactctatcgatttgaa 6011955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 24229647 - 24229601
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  24229647 ttacgtttttagcgatgtttatatctgatgtactctatcgatttgaa 24229601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 38007582 - 38007628
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  38007582 ttacgtttttagcgatgtttgtatctgatgtaatctatcgatttgaa 38007628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 38598022 - 38598068
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  38598022 ttacgtttttagcgatgtttgtatctgatgtactctatcaatttgaa 38598068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 13007454 - 13007500
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||    
T  13007454 ttacgtttttagcgatgtttgtatttgatgtactctatcaatttgaa 13007500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 14082255 - 14082213
Alignment:
Q  5 gtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  14082255 gtttttagcgatgtttgtatctgatgtgctctatcgatttgaa 14082213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 14726324 - 14726278
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||    
T  14726324 ttacgtttttagtgatgtttgtatctgatgtaatctatcgatttgaa 14726278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 25980382 - 25980428
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||    
T  25980382 ttacgtttttagcgatgtttgcatctgatatactctatcgatttgaa 25980428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 1409729 - 1409771
Alignment:
Q  5 gtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||||||||||||||||||||||| | |||||||    
T  1409729 gtttttagcgatgtttgtatctgatgtactctaccaatttgaa 1409771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 8096361 - 8096316
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||    
T  8096361 ttacatttttagcgatgtttgtatct-atgtactctatcgatttgaa 8096316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 26825655 - 26825701
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||| |||||||||| |||| |||||||||||||||||    
T  26825655 ttacgtttttagctatgtttgtatttgatatactctatcgatttgaa 26825701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 35851022 - 35851068
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||||||||||||||||||| || ||||| ||||||||    
T  35851022 ttacgtttttagcgatgtttgtatctgatataatctattgatttgaa 35851068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 13422158 - 13422203
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||| ||||||| |||||| |||||||    
T  13422158 ttacgtttttagcgatgtttgtatatgatgta-tctatcaatttgaa 13422203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 56040509 - 56040463
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  56040509 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 56040463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 32766763 - 32766806
Alignment:
Q  4 cgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  32766763 cgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 32766806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2521025 - 2521071
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  2521025 ttacgtttttagcgatgtttgtatctgatggactctatcgatttgaa 2521071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 13634361 - 13634407
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  13634361 ttacgcttttagcgatgtttgtatctgatgtactctatcgatttgaa 13634407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 19853375 - 19853329
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  19853375 ttacgtttttaacgatgtttgtatctgatgtactctatcgatttgaa 19853329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21686105 - 21686059
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  21686105 ttacgtttgtagcgatgtttgtatctgatgtactctatcgatttgaa 21686059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 24098932 - 24098886
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  24098932 ttacgtttttagcaatgtttgtatctgatgtactctatcgatttgaa 24098886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 26633534 - 26633488
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  26633534 ttacgtttttagtgatgtttgtatctgatgtactctatcgatttgaa 26633488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 48257495 - 48257449
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  48257495 ttacgtttttaacgatgtttgtatctgatgtactctatcgatttgaa 48257449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 10258764 - 10258718
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||    
T  10258764 ttacgtttttagcaatgtttgtatctgatgtactctatcaatttgaa 10258718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 17949181 - 17949140
Alignment:
Q  6 tttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  17949181 tttttagcgatgtttgtatctgatatactctatcgatttgaa 17949140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 17953033 - 17952992
Alignment:
Q  6 tttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  17953033 tttttagcgatgtttgtatctgatatactctatcgatttgaa 17952992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 35348553 - 35348588
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactct 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  35348553 ttacgtttttagcgatgtttgtatctgatgtactct 35348588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4142627 - 4142581
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||| |||||||| |||||||||| ||||||||||||||||||||||    
T  4142627 ttacatttttagcaatgtttgtatttgatgtactctatcgatttgaa 4142581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 43510442 - 43510488
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||| ||||||| ||||||||| ||||||||||||    
T  43510442 ttacgtttttagcgatatttgtatttgatgtactttatcgatttgaa 43510488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 21662687 - 21662721
Alignment:
Q  5 gtttttagcgatgtttgtatctgatgtactctatc 39  Q
    |||||||||||||||||||| ||||||||||||||    
T  21662687 gtttttagcgatgtttgtatttgatgtactctatc 21662721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 21671451 - 21671485
Alignment:
Q  5 gtttttagcgatgtttgtatctgatgtactctatc 39  Q
    |||||||||||||||||||| ||||||||||||||    
T  21671451 gtttttagcgatgtttgtatttgatgtactctatc 21671485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 44
Target Start/End: Original strand, 22611449 - 22611479
Alignment:
Q  14 gatgtttgtatctgatgtactctatcgattt 44  Q
    |||||||||||||||||||||||||||||||    
T  22611449 gatgtttgtatctgatgtactctatcgattt 22611479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 26090773 - 26090735
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatc 39  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  26090773 ttacgtttttagcgttgtttgtatctgatatactctatc 26090735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 10496584 - 10496628
Alignment:
Q  3 acgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||| ||||||| |||| ||||||||| |||||||    
T  10496584 acgtttttagcgatatttgtatttgatatactctatcaatttgaa 10496628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 54022105 - 54022133
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgat 29  Q
    |||||||||||||||||||||||||||||    
T  54022105 ttacgtttttagcgatgtttgtatctgat 54022133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21533672 - 21533626
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21533672 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 21533626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 43017113 - 43017159
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  43017113 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 43017159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 45568308 - 45568262
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  45568308 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 45568262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 54149216 - 54149262
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  54149216 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 54149262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 6954559 - 6954513
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  6954559 ttacgtttttagcgatgtttgtatctgaagtactctatcgatttgaa 6954513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 44959836 - 44959790
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  44959836 ttacgtttttagcgatgtttgtatctgatgtattctatcgatttgaa 44959790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 52922980 - 52922934
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  52922980 ttacgtttttagcgatgtttgtatttgatgtactctatcgatttgaa 52922934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 9797397 - 9797351
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||    
T  9797397 ttacgttcttagcgatgtttgtatctgatgtactatatcgatttgaa 9797351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 9998692 - 9998738
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||    
T  9998692 ttacgtttttagctatgtttgtatttgatgtactctatcgatttgaa 9998738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 10108461 - 10108507
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||    
T  10108461 ttacgtttttagctatgtttgtatttgatgtactctatcgatttgaa 10108507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 36910629 - 36910583
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||    
T  36910629 ttacgttttttgcgatgtttatatctgatgtactctatcgatttgaa 36910583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 40487554 - 40487596
Alignment:
Q  5 gtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  40487554 gtttttagcgatgtttgtatctgatatactctatcgatttgaa 40487596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 48650597 - 48650551
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||    
T  48650597 ttacatttttagcgatatttgtatctgatgtactctatcgatttgaa 48650551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 21431838 - 21431886
Alignment:
Q  1 ttacgtttttagcgatgt--ttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||    
T  21431838 ttacgtttttagcgatgtgtttgtatctgatgtactctatcgatttgaa 21431886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 4711711 - 4711751
Alignment:
Q  5 gtttttagcgatgtttgtatctgatgtactctatcgatttg 45  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  4711711 gtttttagtgatgtttgtatctgatgtactctatcgatttg 4711751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 43488448 - 43488408
Alignment:
Q  7 ttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  43488448 ttttagcgatgtttgtatctaatgtactctatcgatttgaa 43488408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 32701721 - 32701760
Alignment:
Q  6 tttttagcgatgtttgtatctgatgtactctatcgatttg 45  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  32701721 tttttagcgatgtttgtatctgatgtattctatcgatttg 32701760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 10229701 - 10229747
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||| |||||||||| |||| |||||||||||||||||    
T  10229701 ttacgtttttagctatgtttgtatttgatatactctatcgatttgaa 10229747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 33580105 - 33580151
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||| ||||||||||| ||||||| ||||||||||||||    
T  33580105 ttacgtttttagtgatgtttgtatttgatgtaatctatcgatttgaa 33580151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 36461300 - 36461254
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||| ||||||||||||||||||||| |||||||||||| |||||||    
T  36461300 ttacatttttagcgatgtttgtatctaatgtactctatcaatttgaa 36461254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 38546024 - 38546070
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||| ||||||||||||||| ||| ||||||||||||||    
T  38546024 ttacgtttttagtgatgtttgtatctgaggtaatctatcgatttgaa 38546070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 46304383 - 46304338
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||    
T  46304383 ttacgtttttagc-atgtttgtatctgatgtactctatcaatttgaa 46304338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 47041911 - 47041865
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||| |||||||||||||||||| |||||| |||||||    
T  47041911 ttacgtttttagcaatgtttgtatctgatgtaatctatctatttgaa 47041865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 38859980 - 38859948
Alignment:
Q  15 atgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||||||||    
T  38859980 atgtttgtatctgatgtactctatcgatttgaa 38859948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 31271695 - 31271652
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgattt 44  Q
    |||||||||||||||| |||||||||||||| ||||||| ||||    
T  31271695 ttacgtttttagcgatatttgtatctgatgttctctatcaattt 31271652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 7448777 - 7448731
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||| |||||||| |||||| ||||||||||| |||||||    
T  7448777 ttacgtttttatcgatgtttatatctgttgtactctatcaatttgaa 7448731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 7456919 - 7456873
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||| |||||||| |||||| ||||||||||| |||||||    
T  7456919 ttacgtttttatcgatgtttatatctgttgtactctatcaatttgaa 7456873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 10233299 - 10233341
Alignment:
Q  5 gtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||| | |||||||||| ||||||||||||||||||||||    
T  10233299 gtttttatctatgtttgtatttgatgtactctatcgatttgaa 10233341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 37040993 - 37041031
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatc 39  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  37040993 ttacgtttctagcgatttttgtatctgatgtactctatc 37041031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 40556931 - 40556973
Alignment:
Q  5 gtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||| ||||||||| | ||||||||||    
T  40556931 gtttttagcgatgtttgtatttgatgtactatgtcgatttgaa 40556973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 20464833 - 20464805
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgat 29  Q
    |||||||||||||||||||||||||||||    
T  20464833 ttacgtttttagcgatgtttgtatctgat 20464805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 11985097 - 11985051
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  11985097 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 11985051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 31788692 - 31788738
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  31788692 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 31788738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4778989 - 4779035
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  4778989 ttacgtttttagcgatgtttgtatttgatgtactctatcgatttgaa 4779035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 5427733 - 5427687
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  5427733 ttacgcttttagcgatgtttgtatctgatgtactctatcgatttgaa 5427687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 31193200 - 31193154
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  31193200 ttacgtttttagtgatgtttgtatctgatgtactctatcgatttgaa 31193154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 36692110 - 36692156
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  36692110 ttacgttcttagcgatgtttgtatctgatgtactctatcgatttgaa 36692156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 36942986 - 36942940
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  36942986 ttacgtttttagcgatgtttgtatctgatgtactctattgatttgaa 36942940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 1415795 - 1415839
Alignment:
Q  3 acgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  1415795 acgtttttagcgatgtttgtatctgatgtaatctatcgatttgaa 1415839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1421911 - 1421957
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  1421911 ttacgtttttagtgatgtttgtatctgatgtactttatcgatttgaa 1421957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 18763704 - 18763750
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||    
T  18763704 ttacgtttttagcgatatttgtatctgatgtactctattgatttgaa 18763750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 33585599 - 33585553
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||    
T  33585599 ttacgtttttaacgatgtttgtatctgatgtactctattgatttgaa 33585553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 35220564 - 35220610
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||    
T  35220564 ttacgtttttagcgatctttgtatctgatgtactctatcaatttgaa 35220610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 38445402 - 38445448
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||    
T  38445402 ttacgtttttaacaatgtttgtatctgatgtactctatcgatttgaa 38445448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4041458 - 4041412
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||| |||| |||||||||||||||| |||||||||||||    
T  4041458 ttacgtttttaacgatttttgtatctgatgtacactatcgatttgaa 4041412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 12677311 - 12677269
Alignment:
Q  5 gtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||| ||| ||||||||||    
T  12677311 gtttttagcgatgtttgtatctgatgtaatctgtcgatttgaa 12677269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 29173581 - 29173535
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||||||| || ||| |||||||    
T  29173581 ttacgtttttagcgatgtttgtatctgatgtaatcaatcaatttgaa 29173535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 33923941 - 33923987
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||| ||||||||||| ||||||||||||||| ||||||||||||||    
T  33923941 ttacctttttagcgatttttgtatctgatgtaatctatcgatttgaa 33923987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 37876466 - 37876424
Alignment:
Q  5 gtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||| |||||||||||||| |||||||    
T  37876466 gtttttagcgatgtttgtatttgatgtactctatcaatttgaa 37876424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 7677737 - 7677694
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgattt 44  Q
    |||||||||||||||||||| |||||||| ||||||||| ||||    
T  7677737 ttacgtttttagcgatgtttatatctgatatactctatcaattt 7677694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7646714 - 7646760
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||| ||| ||| ||||||||| ||||||||||||    
T  7646714 ttacgtttttagcgatctttatatttgatgtactttatcgatttgaa 7646760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 9169121 - 9169075
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||| ||||||| ||||||||| |||| |||||||||||    
T  9169121 ttacgtttttagtgatgtttttatctgatgcactcaatcgatttgaa 9169075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 25508928 - 25508886
Alignment:
Q  5 gtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||| |||||||||||| |||||||||||||| |||||||    
T  25508928 gtttttaccgatgtttgtatatgatgtactctatcaatttgaa 25508886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4413343 - 4413389
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  4413343 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 4413389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 11462345 - 11462299
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  11462345 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 11462299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 29738527 - 29738481
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  29738527 ttacgtttttagtgatgtttgtatctgatgtactctatcgatttgaa 29738481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 35484254 - 35484208
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  35484254 ttacatttttagcgatgtttgtatctgatgtactctatcgatttgaa 35484208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 7337521 - 7337480
Alignment:
Q  6 tttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7337521 tttttagcgatgtttgtatctgatgtactctatcgatttgaa 7337480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 21687607 - 21687653
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||    
T  21687607 ttacgtttctagcgatgtttgtatctgatgtaatctatcgatttgaa 21687653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 26535565 - 26535611
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||    
T  26535565 ttacgtttttagctatgtttgtatctgatgtactctatcaatttgaa 26535611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 44915868 - 44915914
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||    
T  44915868 ttacgtttttagtgatgtttgtatctgatgtactctatcaatttgaa 44915914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 49504458 - 49504412
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||    
T  49504458 ttacgtttttaacgatgtttgtatcttatgtactctatcgatttgaa 49504412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 8211170 - 8211125
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttga 46  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||    
T  8211170 ttacgtttttagcgatgtttgtatctaatgtactctatcgaattga 8211125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 10776324 - 10776278
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||||||||||| ||||||| ||||||||| |||||||    
T  10776324 ttacgtttttagcgatgtttgcatctgatatactctatcaatttgaa 10776278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 16989600 - 16989646
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||| ||||||||||| ||||||| ||||||||||||||    
T  16989600 ttacgtttttagtgatgtttgtatatgatgtaatctatcgatttgaa 16989646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 23289255 - 23289209
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||||||    
T  23289255 ttacgtatttagcgatgtttgtatatgatgtaatctatcgatttgaa 23289209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 32395226 - 32395272
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||| || ||||||||| ||||||||||||||||||||||    
T  32395226 ttacgtttttaacggtgtttgtatttgatgtactctatcgatttgaa 32395272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 34878141 - 34878095
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||||||||||  |||||||||| ||||||||||||||    
T  34878141 ttacgtttttagcgatgtttccatctgatgtaatctatcgatttgaa 34878095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 940471 - 940510
Alignment:
Q  5 gtttttagcgatgtttgtatctgatgtactctatcgattt 44  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  940471 gtttttagcgatgtttgtatcttatgtactctattgattt 940510  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 15431529 - 15431494
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactct 36  Q
    ||||||||||||| ||||||||||||||||||||||    
T  15431529 ttacgtttttagcaatgtttgtatctgatgtactct 15431494  T

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Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 36894264 - 36894225
Alignment:
Q  8 tttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  36894264 tttagcgatatttgtatttgatgtactctatcgatttgaa 36894225  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1742516 - 1742562
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||||||||||||||| ||||||||||| | || |||||||||    
T  1742516 ttacgtttttagcgatgtttatatctgatgtaatatagcgatttgaa 1742562  T

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Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21947481 - 21947435
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||| |||||| |||| ||||||| ||||||||||||||||||||||    
T  21947481 ttacatttttaacgatatttgtatatgatgtactctatcgatttgaa 21947435  T

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Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 51373721 - 51373675
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||| |||||||||||||| ||||||| |||| |||||||    
T  51373721 ttacgtttttatcgatgtttgtatctaatgtactttatcaatttgaa 51373675  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 14872879 - 14872911
Alignment:
Q  12 gcgatgtttgtatctgatgtactctatcgattt 44  Q
    ||||||||||||| |||||||||||||||||||    
T  14872879 gcgatgtttgtatgtgatgtactctatcgattt 14872911  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 27579985 - 27579945
Alignment:
Q  7 ttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||| ||||||||| |||||||||||||| |||||||    
T  27579985 ttttagcgttgtttgtatatgatgtactctatcaatttgaa 27579945  T

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Target: scaffold0136 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 9905 - 9859
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  9905 ttacgtttttagcgatgtttgtatctggtgtactctatcgatttgaa 9859  T

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Target: scaffold0445 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 1570 - 1613
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgattt 44  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  1570 ttacgtttttagcgatgtttgtatctgatgtactctatcaattt 1613  T

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Target: scaffold0026 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 71733 - 71687
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||    
T  71733 ttacgtttctagcgatgtttgtatctgatgtactctatcaatttgaa 71687  T

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Target: scaffold0017 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 32610 - 32564
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||    
T  32610 ttacgtttttagccatgtttgtatctgatgtactctatcgttttgaa 32564  T

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Target: scaffold0127 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 15722 - 15766
Alignment:
Q  5 gtttttagcgatgtttgtatctgatgtactctatcgatttgaagg 49  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||    
T  15722 gtttttagcgatgtttgtaactgatgtactcaatcgatttgaagg 15766  T

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Target: scaffold0884 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0884
Description:

Target: scaffold0884; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 1836 - 1790
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||||||||||||||||| |||||| | ||||||||||||||    
T  1836 ttacgtttttagcgatgtttgtacctgatgcattctatcgatttgaa 1790  T

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Target: scaffold0121 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 31137 - 31091
Alignment:
Q  1 ttacgtttttagcgatgtttgtatctgatgtactctatcgatttgaa 47  Q
    ||||||||| |||||||||||||||||||||||| |||| |||||||    
T  31137 ttacgttttaagcgatgtttgtatctgatgtactatatcaatttgaa 31091  T

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