View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19029_low_10 (Length: 300)

Name: NF19029_low_10
Description: NF19029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19029_low_10
NF19029_low_10
[»] chr4 (11 HSPs)
chr4 (35-253)||(7765671-7765889)
chr4 (35-253)||(7786493-7786711)
chr4 (163-223)||(37826938-37826998)
chr4 (163-223)||(49048517-49048577)
chr4 (39-134)||(7908485-7908580)
chr4 (156-222)||(45372006-45372072)
chr4 (39-120)||(7773643-7773724)
chr4 (161-223)||(7800693-7800755)
chr4 (40-114)||(48863421-48863495)
chr4 (82-122)||(48852847-48852887)
chr4 (39-71)||(48898954-48898986)
[»] chr3 (2 HSPs)
chr3 (39-120)||(11015300-11015381)
chr3 (39-122)||(11005737-11005820)
[»] chr6 (1 HSPs)
chr6 (82-124)||(21015988-21016030)
[»] chr5 (1 HSPs)
chr5 (82-122)||(179218-179258)


Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 35 - 253
Target Start/End: Complemental strand, 7765889 - 7765671
Alignment:
Q  35 aatatcctttccgttaaatcaaagccaacaatgacatccaaagctatatcatgacgcgaagacaaccaatgaatagccccattaaaaaccactccttctc 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7765889 aatatcctttccgttaaatcaaagccaacaatgacatccaaagctatatcatgacgcgaagacaaccaatgaatagccccattaaaaaccaccccttctc 7765790  T
Q  135 cttctctataatcgtcgccacaaggtaagtgagtaccctcgatttctttccaagtattgtctttaaacgagaaaaactccaaatgtgattgaggaacacc 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7765789 cttctctataatcgtcgccacaaggtaagtgagtaccctcgatttctttccaagtattgtctttaaacgagaaaaactccaaatgtgattgaggaacacc 7765690  T
Q  235 aactgagaatggattaact 253  Q
    ||| |||||||||||||||    
T  7765689 aacggagaatggattaact 7765671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 35 - 253
Target Start/End: Complemental strand, 7786711 - 7786493
Alignment:
Q  35 aatatcctttccgttaaatcaaagccaacaatgacatccaaagctatatcatgacgcgaagacaaccaatgaatagccccattaaaaaccactccttctc 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  7786711 aatatcctttccgttaaatcaaagccaacaatgacatccaaagctatatcacgacgcgaagacaaccaatgaatagccccattaaaaaccaccccttctc 7786612  T
Q  135 cttctctataatcgtcgccacaaggtaagtgagtaccctcgatttctttccaagtattgtctttaaacgagaaaaactccaaatgtgattgaggaacacc 234  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7786611 cttctctataattgtcgccataaggtaagtgagtaccctcgatttctttccaagtattgtctttaaacgagaaaacctccaaatgtgattgaggaacacc 7786512  T
Q  235 aactgagaatggattaact 253  Q
    |||| ||||||||||||||    
T  7786511 aactaagaatggattaact 7786493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 37826938 - 37826998
Alignment:
Q  163 gtgagtaccctcgatttctttccaagtattgtctttaaacgagaaaaactccaaatgtgat 223  Q
    |||||||||||| |||||| |||| | ||| ||||| ||||||||||||||||||||||||    
T  37826938 gtgagtaccctcaatttctctccatgaattatctttcaacgagaaaaactccaaatgtgat 37826998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 49048517 - 49048577
Alignment:
Q  163 gtgagtaccctcgatttctttccaagtattgtctttaaacgagaaaaactccaaatgtgat 223  Q
    |||||||||||| |||||||||||  |||| ||| | ||||||||||||||||||||||||    
T  49048517 gtgagtaccctcaatttctttccatatattatctctcaacgagaaaaactccaaatgtgat 49048577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 134
Target Start/End: Complemental strand, 7908580 - 7908485
Alignment:
Q  39 tcctttccgttaaatcaaagccaacaatgacatccaaagctatatcatgacgcgaagacaaccaatgaatagccccattaaaaaccactccttctc 134  Q
    |||||||| ||||||||||| |||||||||||  |||| ||| |||| ||||  ||| ||||||||||||| | |||||||| | || ||||||||    
T  7908580 tcctttccattaaatcaaaggcaacaatgacagtcaaacctaaatcacgacgtaaagccaaccaatgaataacaccattaaatagcaatccttctc 7908485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 45372006 - 45372072
Alignment:
Q  156 aaggtaagtgagtaccctcgatttctttccaagtattgtctttaaacgagaaaaactccaaatgtga 222  Q
    |||| |||||||||||||| | |||| |||||||||| ||| | || ||||||||||||||||||||    
T  45372006 aagggaagtgagtaccctcaagttctctccaagtattatctctcaatgagaaaaactccaaatgtga 45372072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 7773643 - 7773724
Alignment:
Q  39 tcctttccgttaaatcaaagccaacaatgacatccaaagctatatcatgacgcgaagacaaccaatgaatagccccattaaa 120  Q
    |||||||| |||||||||||  |||||| |||| | ||  || |||| ||||| ||| ||||||||||||||||||||||||    
T  7773643 tcctttccattaaatcaaaggaaacaattacattccaacgtaaatcacgacgcaaagccaaccaatgaatagccccattaaa 7773724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 7800755 - 7800693
Alignment:
Q  161 aagtgagtaccctcgatttctttccaagtattgtctttaaacgagaaaaactccaaatgtgat 223  Q
    |||| |||||| || ||||||||||| ||||| |||  ||||||||||| |||||||||||||    
T  7800755 aagttagtaccgtcaatttctttccaggtattatctggaaacgagaaaacctccaaatgtgat 7800693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 48863495 - 48863421
Alignment:
Q  40 cctttccgttaaatcaaagccaacaatgacatccaaagctatatcatgacgcgaagacaaccaatgaatagcccc 114  Q
    |||||||||||||  |||| ||||||| ||||  | | |||||||||||||  ||| ||||||||||||||||||    
T  48863495 cctttccgttaaacgaaaggcaacaataacataaacacctatatcatgacgaaaagccaaccaatgaatagcccc 48863421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 48852887 - 48852847
Alignment:
Q  82 atcatgacgcgaagacaaccaatgaatagccccattaaaaa 122  Q
    |||||||||  ||| ||||||||||||||||||||||||||    
T  48852887 atcatgacgaaaagccaaccaatgaatagccccattaaaaa 48852847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 48898986 - 48898954
Alignment:
Q  39 tcctttccgttaaatcaaagccaacaatgacat 71  Q
    |||||||||||||||||||| ||||||||||||    
T  48898986 tcctttccgttaaatcaaaggcaacaatgacat 48898954  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 11015300 - 11015381
Alignment:
Q  39 tcctttccgttaaatcaaagccaacaatgacatccaaagctatatcatgacgcgaagacaaccaatgaatagccccattaaa 120  Q
    ||||||||  |||||||||||||||||| |||||||  | || |||||| ||  |||| ||||||||||||| |||||||||    
T  11015300 tcctttccactaaatcaaagccaacaataacatccattgataaatcatggcgaaaagagaaccaatgaatagtcccattaaa 11015381  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 11005737 - 11005820
Alignment:
Q  39 tcctttccgttaaatcaaagccaacaatgacatccaaagctatatcatgacgcgaagacaaccaatgaatagccccattaaaaa 122  Q
    ||||||||  |||||||||||||||||| |||||||  |  | |||||| ||  |||| ||||||||||||| |||||||||||    
T  11005737 tcctttccactaaatcaaagccaacaataacatccattgacaaatcatggcgaaaagagaaccaatgaatagtcccattaaaaa 11005820  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 21016030 - 21015988
Alignment:
Q  82 atcatgacgcgaagacaaccaatgaatagccccattaaaaacc 124  Q
    |||||||||  ||| ||||||||||||||||||||||||||||    
T  21016030 atcatgacgaaaagccaaccaatgaatagccccattaaaaacc 21015988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 179258 - 179218
Alignment:
Q  82 atcatgacgcgaagacaaccaatgaatagccccattaaaaa 122  Q
    |||||||||  |||| |||||||||||||||||||||||||    
T  179258 atcatgacgaaaagagaaccaatgaatagccccattaaaaa 179218  T

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