View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19029_low_12 (Length: 290)

Name: NF19029_low_12
Description: NF19029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19029_low_12
NF19029_low_12
[»] chr4 (41 HSPs)
chr4 (11-290)||(7766011-7766290)
chr4 (13-290)||(7786833-7787110)
chr4 (15-178)||(7878828-7878991)
chr4 (16-178)||(7771840-7772002)
chr4 (16-178)||(7790525-7790687)
chr4 (15-123)||(7773239-7773347)
chr4 (19-158)||(7779386-7779525)
chr4 (15-178)||(7908747-7908910)
chr4 (15-178)||(7237196-7237359)
chr4 (15-168)||(7823427-7823583)
chr4 (214-290)||(7771764-7771840)
chr4 (68-176)||(48903399-48903507)
chr4 (15-168)||(7801095-7801251)
chr4 (240-290)||(49043810-49043860)
chr4 (214-290)||(7790449-7790525)
chr4 (234-290)||(48864404-48864460)
chr4 (15-168)||(7813935-7814091)
chr4 (234-290)||(45371710-45371766)
chr4 (238-290)||(49038518-49038570)
chr4 (131-178)||(7773394-7773441)
chr4 (53-176)||(7905010-7905133)
chr4 (247-290)||(48147362-48147405)
chr4 (240-289)||(37826632-37826681)
chr4 (237-290)||(48853050-48853103)
chr4 (214-290)||(7908671-7908747)
chr4 (234-290)||(45384528-45384584)
chr4 (64-147)||(48147221-48147304)
chr4 (77-156)||(48871027-48871106)
chr4 (77-156)||(48876331-48876410)
chr4 (77-156)||(48886713-48886792)
chr4 (247-290)||(49048204-49048247)
chr4 (68-146)||(45365726-45365804)
chr4 (233-290)||(7237378-7237435)
chr4 (237-290)||(7773464-7773517)
chr4 (237-290)||(7813846-7813899)
chr4 (237-290)||(7878752-7878805)
chr4 (237-290)||(48870929-48870982)
chr4 (237-290)||(48876233-48876286)
chr4 (237-290)||(48886615-48886668)
chr4 (234-290)||(48156065-48156121)
chr4 (250-290)||(48903324-48903364)
[»] chr8 (1 HSPs)
chr8 (85-147)||(4030311-4030373)
[»] chr2 (1 HSPs)
chr2 (85-147)||(29350898-29350960)
[»] chr7 (2 HSPs)
chr7 (68-156)||(48884291-48884382)
chr7 (236-288)||(48884195-48884247)
[»] chr5 (3 HSPs)
chr5 (68-156)||(42561842-42561930)
chr5 (234-290)||(42561969-42562025)
chr5 (85-114)||(9120272-9120301)
[»] chr3 (4 HSPs)
chr3 (74-158)||(47451412-47451496)
chr3 (241-290)||(11024146-11024195)
chr3 (249-290)||(11005579-11005620)
chr3 (234-290)||(47451536-47451592)
[»] chr6 (2 HSPs)
chr6 (233-290)||(21979263-21979320)
chr6 (66-114)||(21979147-21979195)
[»] chr1 (1 HSPs)
chr1 (238-290)||(24367534-24367586)


Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 11 - 290
Target Start/End: Complemental strand, 7766290 - 7766011
Alignment:
Q  11 cagagagtgaaagtagagactcggtatacacgacaacttcggatggactgttgcagaaggagtgatgccctaaaaactgtcctttgtcattatacttcac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7766290 cagagagtgaaagtagagactcggtatacacgacaacttcggatggactgttgcagaaggagtgatgccctaaaaactgtcctttgtcattatacttcac 7766191  T
Q  111 caatttagtaccaccatattttccaataatatcaccattttctgtagaatacatagggtgaaagtagtccacaaatctggaatagtacagagggtcaaat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7766190 caatttagtaccaccatattttccaataatatcaccattttctgtagaatacatagggtgaaagtagtccacaaatctggaatagtacagagggtcaaat 7766091  T
Q  211 tcatgatcaggaatggcattttgaggaagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcaccca 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7766090 tcatgatcaggaatggcattttgaggaagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcaccca 7766011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 290
Target Start/End: Complemental strand, 7787110 - 7786833
Alignment:
Q  13 gagagtgaaagtagagactcggtatacacgacaacttcggatggactgttgcagaaggagtgatgccctaaaaactgtcctttgtcattatacttcacca 112  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7787110 gagagtgaaagtagagactctgtatacacgacaacttcggatggactgttgcagaaggagtgatgccctaaaaactgtcctttgtcattatacttcacca 7787011  T
Q  113 atttagtaccaccatattttccaataatatcaccattttctgtagaatacatagggtgaaagtagtccacaaatctggaatagtacagagggtcaaattc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |     
T  7787010 atttagtaccaccatattttccaataatatcaccattttctgtagaatacatagggtgaaagtagtccgcaaatctggaatagtacagagggttaaagta 7786911  T
Q  213 atgatcaggaatggcattttgaggaagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcaccca 290  Q
     ||| |||||||| |||  |||||||||||||| |||||| |||| ||  ||| ||| ||||||||||||||||||||    
T  7786910 gtgaccaggaatgacatactgaggaagaacaagagtcttattccaagataaatgcacgttgtattctttcatcaccca 7786833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 15 - 178
Target Start/End: Complemental strand, 7878991 - 7878828
Alignment:
Q  15 gagtgaaagtagagactcggtatacacgacaacttcggatggactgttgcagaaggagtgatgccctaaaaactgtcctttgtcattatacttcaccaat 114  Q
    |||||||||||||||||| ||||||| |||||||||||||||||| || ||||||||| |||||| ||| ||||||||||| ||||||||||||||||||    
T  7878991 gagtgaaagtagagactccgtatacatgacaacttcggatggactattacagaaggagcgatgccttaataactgtcctttatcattatacttcaccaat 7878892  T
Q  115 ttagtaccaccatattttccaataatatcaccattttctgtagaatacatagggtgaaagtagt 178  Q
     ||||||||  || | ||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  7878891 ctagtaccatgatttcttccaataatatcaccattttctgtagaatatataggttgaaagtagt 7878828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 7772002 - 7771840
Alignment:
Q  16 agtgaaagtagagactcggtatacacgacaacttcggatggactgttgcagaaggagtgatgccctaaaaactgtcctttgtcattatacttcaccaatt 115  Q
    |||||||| ||||| || ||||||| ||||| ||| ||| ||||||| ||||||||| | || ||||| |  |||||||| ||||||||||||||||||     
T  7772002 agtgaaagcagagattctgtatacatgacaatttcagattgactgttacagaaggagcgctgtcctaatagttgtcctttatcattatacttcaccaatc 7771903  T
Q  116 tagtaccaccatattttccaataatatcaccattttctgtagaatacatagggtgaaagtagt 178  Q
    |||||| |  || | ||||||||||||||||||||| ||||||||| ||||| ||||||||||    
T  7771902 tagtactaagatttcttccaataatatcaccattttttgtagaatatataggttgaaagtagt 7771840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 7790687 - 7790525
Alignment:
Q  16 agtgaaagtagagactcggtatacacgacaacttcggatggactgttgcagaaggagtgatgccctaaaaactgtcctttgtcattatacttcaccaatt 115  Q
    |||||||| ||||| || ||||||| || |||||| ||| ||||||| ||||||||| | || ||||| |  |||||||| ||||||||||||||||||     
T  7790687 agtgaaagcagagattctgtatacatgaaaacttcagattgactgttacagaaggagcgctgtcctaatagttgtcctttatcattatacttcaccaatc 7790588  T
Q  116 tagtaccaccatattttccaataatatcaccattttctgtagaatacatagggtgaaagtagt 178  Q
    ||||||||  || | |||||||||||||||||| || ||||||||| ||||| ||||||||||    
T  7790587 tagtaccatgatttcttccaataatatcaccatattttgtagaatatataggttgaaagtagt 7790525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 7773239 - 7773347
Alignment:
Q  15 gagtgaaagtagagactcggtatacacgacaacttcggatggactgttgcagaaggagtgatgccctaaaaactgtcctttgtcattatacttcaccaat 114  Q
    ||||||||| |||||||| ||||||| |||||||||||||||||| || ||||||| |||||||| ||| |||||||||| || ||||||||||||||||    
T  7773239 gagtgaaagcagagactcagtatacatgacaacttcggatggactattacagaaggcgtgatgccttaataactgtccttggtaattatacttcaccaat 7773338  T
Q  115 ttagtacca 123  Q
     ||||||||    
T  7773339 ctagtacca 7773347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 7779386 - 7779525
Alignment:
Q  19 gaaagtagagactcggtatacacgacaacttcggatggactgttgcagaaggagtgatgccctaaaaactgtcctttgtcattatacttcaccaatttag 118  Q
    ||||| |||||||| ||||||| |||||||||| ||||||| || ||||||||| |||||| ||| | ||||||||  |||||||||||||||||| |||    
T  7779386 gaaagcagagactccgtatacatgacaacttcgaatggactattacagaaggagcgatgccttaatagctgtccttcatcattatacttcaccaatctag 7779485  T
Q  119 taccaccatattttccaataatatcaccattttctgtaga 158  Q
    |||||  || |  |||||||||||||||||||| ||||||    
T  7779486 taccaagatttcctccaataatatcaccattttttgtaga 7779525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 178
Target Start/End: Complemental strand, 7908910 - 7908747
Alignment:
Q  15 gagtgaaagtagagactcggtatacacgacaacttcggatggactgttgcagaaggagtgatgccctaaaaactgtcctttgtcattatacttcaccaat 114  Q
    ||||||||| |||||||||||||||| |||||||||||||||||| ||  |||||| | |||||| ||| | ||||||||| ||||||||||||||||||    
T  7908910 gagtgaaagcagagactcggtatacatgacaacttcggatggactattaaagaaggtgcgatgccttaatagctgtcctttatcattatacttcaccaat 7908811  T
Q  115 ttagtaccaccatattttccaataatatcaccattttctgtagaatacatagggtgaaagtagt 178  Q
     | | |  |  |  | |||||||||||||||| |||| |||||| |  ||||||||||||||||    
T  7908810 ctggaattaagagttcttccaataatatcaccgttttttgtagagtgtatagggtgaaagtagt 7908747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 178
Target Start/End: Original strand, 7237196 - 7237359
Alignment:
Q  15 gagtgaaagtagagactcggtatacacgacaacttcggatggactgttgcagaaggagtgatgccctaaaaactgtcctttgtcattatacttcaccaat 114  Q
    ||||||||| |||||||| ||||||| ||||||||| ||| |||||   ||||||| | | | | |||| |  |||||||| ||||||||||||||||||    
T  7237196 gagtgaaagcagagactctgtatacatgacaacttcagattgactggaacagaaggggcggtccgctaatagttgtcctttatcattatacttcaccaat 7237295  T
Q  115 ttagtaccaccatattttccaataatatcaccattttctgtagaatacatagggtgaaagtagt 178  Q
     ||||| ||  |  | ||||||||||||||||||||| |||||| |  ||||||||||||||||    
T  7237296 ctagtatcatgacttcttccaataatatcaccattttttgtagagtgtatagggtgaaagtagt 7237359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 15 - 168
Target Start/End: Complemental strand, 7823583 - 7823427
Alignment:
Q  15 gagtgaaagtagagactcggtatacacgacaacttcggatggactgttgcagaaggagtgatgccctaaaaactgtcctttgtcattatacttcaccaat 114  Q
    ||||||||| |||||||||||||||| |||||||| |||||||||||| ||||| || |||||| |||| | ||| |||||   ||| ||||||||||||    
T  7823583 gagtgaaagcagagactcggtatacatgacaactttggatggactgttacagaatgattgatgctctaacagctgccctttactattgtacttcaccaat 7823484  T
Q  115 ttagtaccaccatattttccaataata---tcaccattttctgtagaatacataggg 168  Q
     ||| |||| ||  | || ||||||||   |||||||||| ||| || |||||||||    
T  7823483 atagaaccatcagttgttacaataataatttcaccattttttgtggagtacataggg 7823427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 290
Target Start/End: Complemental strand, 7771840 - 7771764
Alignment:
Q  214 tgatcaggaatggcattttgaggaagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcaccca 290  Q
    ||||||||||||||||    || ||||||||| || |||||||||||||||| ||||||||||||||||||||||||    
T  7771840 tgatcaggaatggcatcaacagaaagaacaagagttttagtccatgacgaatgcactttgtattctttcatcaccca 7771764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 48903507 - 48903399
Alignment:
Q  68 aggagtgatgccctaaaaactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatatcaccattttctgtagaatacatagg 167  Q
    ||||||||| | |||  |||||||||||||||||||||||||||||| |||||||| | | | ||||||| || |||||||||| || |||| | || ||    
T  48903507 aggagtgatactctaggaactgtcctttgtcattatacttcaccaatctagtaccatcttttgttccaatgatgtcaccattttttgaagaacatattgg 48903408  T
Q  168 gtgaaagta 176  Q
    |||||||||    
T  48903407 gtgaaagta 48903399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 168
Target Start/End: Complemental strand, 7801251 - 7801095
Alignment:
Q  15 gagtgaaagtagagactcggtatacacgacaacttcggatggactgttgcagaaggagtgatgccctaaaaactgtcctttgtcattatacttcaccaat 114  Q
    ||||||||| |||||||||||||||| |||||||| |||||||||||| ||||| || ||||||  ||| | ||| |||||   ||| ||||||||||||    
T  7801251 gagtgaaagcagagactcggtatacatgacaactttggatggactgttacagaatgattgatgctttaacagctgccctttactattgtacttcaccaat 7801152  T
Q  115 ttagtaccaccatattttccaataata---tcaccattttctgtagaatacataggg 168  Q
     ||| |||| ||  | || ||||||||   |||||||||| ||| || |||||||||    
T  7801151 atagaaccatcagttgttacaataataatttcaccattttttgtggagtacataggg 7801095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 49043810 - 49043860
Alignment:
Q  240 aacaagtgtcttagtccatgacgaatacactttgtattctttcatcaccca 290  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  49043810 aacaagagtcttagtccatgacgaatgcactttgtattctttcatcaccca 49043860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 290
Target Start/End: Complemental strand, 7790525 - 7790449
Alignment:
Q  214 tgatcaggaatggcattttgaggaagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcaccca 290  Q
    ||||||||||||||||    || ||||||||| || |||||||| ||||||| ||||||||||||||||||||||||    
T  7790525 tgatcaggaatggcatcaatagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcaccca 7790449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 290
Target Start/End: Complemental strand, 48864460 - 48864404
Alignment:
Q  234 aggaagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcaccca 290  Q
    ||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||    
T  48864460 aggaagaacaagaatcttagtccaagacgaatgcactttgtattctttcatcaccca 48864404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 168
Target Start/End: Complemental strand, 7814091 - 7813935
Alignment:
Q  15 gagtgaaagtagagactcggtatacacgacaacttcggatggactgttgcagaaggagtgatgccctaaaaactgtcctttgtcattatacttcaccaat 114  Q
    ||||||||| |||||||||||||||| |||||||| |||||||  ||| ||||| || |||||| |||| | ||| |||||   ||| ||||||||||||    
T  7814091 gagtgaaagcagagactcggtatacatgacaactttggatggagcgttacagaatgattgatgctctaacagctgccctttactattgtacttcaccaat 7813992  T
Q  115 ttagtaccaccatattttccaataata---tcaccattttctgtagaatacataggg 168  Q
     ||| |||| ||  | || ||||||||   |||||||||| ||| || |||||||||    
T  7813991 atagaaccatcagttgttacaataataatttcaccattttttgtggagtacataggg 7813935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 45371710 - 45371766
Alignment:
Q  234 aggaagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcaccca 290  Q
    |||||||||||  ||||||||||| ||||||| |||||||||||||||||| |||||    
T  45371710 aggaagaacaaaagtcttagtccaagacgaatgcactttgtattctttcataaccca 45371766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 49038518 - 49038570
Alignment:
Q  238 agaacaagtgtcttagtccatgacgaatacactttgtattctttcatcaccca 290  Q
    |||||||| ||||||||||| |||||||  |||||||||||||||||||||||    
T  49038518 agaacaagagtcttagtccaagacgaatgaactttgtattctttcatcaccca 49038570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 178
Target Start/End: Original strand, 7773394 - 7773441
Alignment:
Q  131 ttccaataatatcaccattttctgtagaatacatagggtgaaagtagt 178  Q
    ||||||||||||||||||||| ||||||||| ||||| ||||||||||    
T  7773394 ttccaataatatcaccattttttgtagaatatataggttgaaagtagt 7773441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 176
Target Start/End: Complemental strand, 7905133 - 7905010
Alignment:
Q  53 atggactgttgcagaaggagtgatgccctaaaaactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatatcaccattttc 152  Q
    ||||||| || |||| |||| |||||| ||| | ||| ||||  ||||||||||| |||||| || |||||  || |  ||| |||||||||||||| |     
T  7905133 atggactattacagatggagcgatgccttaatagctgcccttcatcattatactttaccaatctactaccaagatttcctccgataatatcaccattctt 7905034  T
Q  153 tgtagaatacatagggtgaaagta 176  Q
    |||||| |||||||||||||||||    
T  7905033 tgtagagtacatagggtgaaagta 7905010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 290
Target Start/End: Original strand, 48147362 - 48147405
Alignment:
Q  247 gtcttagtccatgacgaatacactttgtattctttcatcaccca 290  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||    
T  48147362 gtcttagtccaagacgaatgcactttgtattctttcatcaccca 48147405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 289
Target Start/End: Original strand, 37826632 - 37826681
Alignment:
Q  240 aacaagtgtcttagtccatgacgaatacactttgtattctttcatcaccc 289  Q
    |||||| ||||||||||| ||||||| || ||||||||||||||||||||    
T  37826632 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcaccc 37826681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 48853103 - 48853050
Alignment:
Q  237 aagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcaccca 290  Q
    ||||||||| ||||||||||| ||||||  |||||||||||||||||| |||||    
T  48853103 aagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgaccca 48853050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 290
Target Start/End: Complemental strand, 7908747 - 7908671
Alignment:
Q  214 tgatcaggaatggcattttgaggaagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcaccca 290  Q
    ||||||||||||||||    || ||||||||| || ||| |||| || |||| ||||||||||||||||||||||||    
T  7908747 tgatcaggaatggcatcaacagaaagaacaagagttttattccaagatgaatgcactttgtattctttcatcaccca 7908671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 45384528 - 45384584
Alignment:
Q  234 aggaagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcaccca 290  Q
    |||||||||| | ||||| ||||| ||||||| |||||| |||||||||||||||||    
T  45384528 aggaagaacacgagtctttgtccaagacgaatgcactttatattctttcatcaccca 45384584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 48147221 - 48147304
Alignment:
Q  64 cagaaggagtgatgccctaaaaactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatatcacca 147  Q
    ||||| |||| |||| ||| || |||||||||||| |||||||||| ||||| |||  |||||| | |||||||||| ||||||    
T  48147221 cagaatgagttatgctctagaagctgtcctttgtcgttatacttcaacaattcagtttcaccatttgttccaataatgtcacca 48147304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 48871106 - 48871027
Alignment:
Q  77 gccctaaaaactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatatcaccattttctgta 156  Q
    ||||||| |||||||| ||||||| |||||||||||||  | |||||| || |  |||||||||||||||| ||| ||||    
T  48871106 gccctaacaactgtccattgtcatcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgta 48871027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 48876410 - 48876331
Alignment:
Q  77 gccctaaaaactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatatcaccattttctgta 156  Q
    ||||||| |||||||| ||||||| |||||||||||||  | |||||| || |  |||||||||||||||| ||| ||||    
T  48876410 gccctaacaactgtccattgtcatcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgta 48876331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 48886792 - 48886713
Alignment:
Q  77 gccctaaaaactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatatcaccattttctgta 156  Q
    ||||||| |||||||| ||||||| |||||||||||||  | |||||| || |  |||||||||||||||| ||| ||||    
T  48886792 gccctaacaactgtccattgtcatcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgta 48886713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 247 - 290
Target Start/End: Original strand, 49048204 - 49048247
Alignment:
Q  247 gtcttagtccatgacgaatacactttgtattctttcatcaccca 290  Q
    ||||||||||||||||||| |||||| || ||||||||||||||    
T  49048204 gtcttagtccatgacgaatgcactttatactctttcatcaccca 49048247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 45365726 - 45365804
Alignment:
Q  68 aggagtgatgccctaaaaactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatatcacc 146  Q
    ||||| |||| ||||| ||||||||||  |||||||||||||||||| || ||  | ||| | ||||||||||||||||    
T  45365726 aggagcgatgtcctaacaactgtccttcatcattatacttcaccaatctattaagatcatctgttccaataatatcacc 45365804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 7237378 - 7237435
Alignment:
Q  233 gaggaagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcaccca 290  Q
    ||||||| ||||| || ||||||||  |||||| || |||||||||||||||||||||    
T  7237378 gaggaagcacaagagttttagtccaaaacgaatgcattttgtattctttcatcaccca 7237435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 290
Target Start/End: Original strand, 7773464 - 7773517
Alignment:
Q  237 aagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcaccca 290  Q
    ||||||||| |  ||| |||| ||||||| ||||||||||||||||||||||||    
T  7773464 aagaacaagagatttaatccaagacgaatgcactttgtattctttcatcaccca 7773517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 7813899 - 7813846
Alignment:
Q  237 aagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcaccca 290  Q
    ||||||||| || ||| |||| ||||||| ||||||||||||||||| ||||||    
T  7813899 aagaacaagagttttattccaagacgaatgcactttgtattctttcaacaccca 7813846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 7878805 - 7878752
Alignment:
Q  237 aagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcaccca 290  Q
    ||||||||| || ||| |||| || |||| ||||||||||||||||||||||||    
T  7878805 aagaacaagagttttaatccaagatgaatgcactttgtattctttcatcaccca 7878752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 48870982 - 48870929
Alignment:
Q  237 aagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcaccca 290  Q
    ||||||||| ||||| ||||| ||||| | |||||||||||| |||||||||||    
T  48870982 aagaacaagagtctttgtccaagacgagttcactttgtattcattcatcaccca 48870929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 48876286 - 48876233
Alignment:
Q  237 aagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcaccca 290  Q
    ||||||||| ||||| ||||| ||||| | |||||||||||| |||||||||||    
T  48876286 aagaacaagagtctttgtccaagacgagttcactttgtattcattcatcaccca 48876233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 48886668 - 48886615
Alignment:
Q  237 aagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcaccca 290  Q
    ||||||||| ||||| ||||| ||||| | |||||||||||| |||||||||||    
T  48886668 aagaacaagagtctttgtccaagacgagttcactttgtattcattcatcaccca 48886615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 48156065 - 48156121
Alignment:
Q  234 aggaagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcaccca 290  Q
    |||||| ||||| || |||||||| || |||| |||||||||||| |||||||||||    
T  48156065 aggaaggacaagagttttagtccaagaagaatgcactttgtattcgttcatcaccca 48156121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 48903364 - 48903324
Alignment:
Q  250 ttagtccatgacgaatacactttgtattctttcatcaccca 290  Q
    |||||||| ||| ||| ||||||||||||||||||||||||    
T  48903364 ttagtccaagacaaatgcactttgtattctttcatcaccca 48903324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 4030311 - 4030373
Alignment:
Q  85 aactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatatcacca 147  Q
    |||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||    
T  4030311 aactgtcctttgtcatcatacttcaccaattcagtaccaccatatgttccaataatatcacca 4030373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 29350960 - 29350898
Alignment:
Q  85 aactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatatcacca 147  Q
    |||||||||||||||| |||||||||||||| |||||||||||   |||||||||||||||||    
T  29350960 aactgtcctttgtcataatacttcaccaattcagtaccaccatccgttccaataatatcacca 29350898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 48884382 - 48884291
Alignment:
Q  68 aggagtgatgccctaaaaactgtcctttgtcattatacttcaccaatttagtaccaccatatt---ttccaataatatcaccattttctgta 156  Q
    |||||||||||||||| ||||||||||| ||||||||||||| |||| ||| || |||||  |   ||||||||||||||||| ||| ||||    
T  48884382 aggagtgatgccctaacaactgtcctttatcattatacttcatcaatctagcacgaccatgatctattccaataatatcaccactttttgta 48884291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 48884247 - 48884195
Alignment:
Q  236 gaagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcacc 288  Q
    |||||||||| ||||||||||| |||  || ||||||||||||||||||||||    
T  48884247 gaagaacaagagtcttagtccaagacatatgcactttgtattctttcatcacc 48884195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 68 - 156
Target Start/End: Original strand, 42561842 - 42561930
Alignment:
Q  68 aggagtgatgccctaaaaactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatatcaccattttctgta 156  Q
    |||||| |||| ||| |||||  |||||||| ||||| |||||||||   |||||||||| | ||||||||||||||||||||| ||||    
T  42561842 aggagttatgctctagaaactcccctttgtcgttatatttcaccaatccggtaccaccatctgttccaataatatcaccattttttgta 42561930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 42561969 - 42562025
Alignment:
Q  234 aggaagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcaccca 290  Q
    ||||||||||||  |||||||||| || |||| ||||||||||||||||||||||||    
T  42561969 aggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcaccca 42562025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 9120301 - 9120272
Alignment:
Q  85 aactgtcctttgtcattatacttcaccaat 114  Q
    ||||||||||||||||||||||||||||||    
T  9120301 aactgtcctttgtcattatacttcaccaat 9120272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 74 - 158
Target Start/End: Original strand, 47451412 - 47451496
Alignment:
Q  74 gatgccctaaaaactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatatcaccattttctgtaga 158  Q
    ||||| |||| ||||||||||||||||||||||| ||||||   ||| || ||| | ||||||||||||||||| ||| ||||||    
T  47451412 gatgctctaacaactgtcctttgtcattatacttaaccaatccggtatcatcatctgttccaataatatcaccactttttgtaga 47451496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 290
Target Start/End: Original strand, 11024146 - 11024195
Alignment:
Q  241 acaagtgtcttagtccatgacgaatacactttgtattctttcatcaccca 290  Q
    ||||| ||||||||||| ||||||| |||||||||||||||||| |||||    
T  11024146 acaagagtcttagtccaagacgaatgcactttgtattctttcataaccca 11024195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 290
Target Start/End: Original strand, 11005579 - 11005620
Alignment:
Q  249 cttagtccatgacgaatacactttgtattctttcatcaccca 290  Q
    ||||||||| ||||||| |||||||||||||||||| |||||    
T  11005579 cttagtccaagacgaatgcactttgtattctttcataaccca 11005620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 47451536 - 47451592
Alignment:
Q  234 aggaagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcaccca 290  Q
    |||||||||||| |||||   ||| |||||||  |||||||||||||||||||||||    
T  47451536 aggaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcaccca 47451592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 21979263 - 21979320
Alignment:
Q  233 gaggaagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcaccca 290  Q
    |||||||||||||| ||||| |||| || |||  ||||||||||||||||||||||||    
T  21979263 gaggaagaacaagtttcttattccaagaggaacgcactttgtattctttcatcaccca 21979320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 21979147 - 21979195
Alignment:
Q  66 gaaggagtgatgccctaaaaactgtcctttgtcattatacttcaccaat 114  Q
    |||| |||| |||||||| ||||||||||| ||||| ||||||||||||    
T  21979147 gaagtagtgctgccctaacaactgtcctttatcattgtacttcaccaat 21979195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 24367586 - 24367534
Alignment:
Q  238 agaacaagtgtcttagtccatgacgaatacactttgtattctttcatcaccca 290  Q
    |||||||| || |||||||| ||||||| |||||||||||||| ||| |||||    
T  24367586 agaacaagagttttagtccaagacgaatgcactttgtattcttccattaccca 24367534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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