View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19029_low_15 (Length: 272)
Name: NF19029_low_15
Description: NF19029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19029_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 261
Target Start/End: Original strand, 8357804 - 8358050
Alignment:
| Q |
15 |
aagaaagatatatatagagaacttggtttatttccatcaaaattacaaaacaatcctttgtctgttattagtacaatgcaattccatgacattcgcaata |
114 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8357804 |
aagaaagatatctatagagaacttgctttatttccatcaaaattacaaaacaatcctttgtctgttattagtacaatgcaattccatgacattcgcaata |
8357903 |
T |
|
| Q |
115 |
ggtacatggaacttcttcaaaaactaacatcaaagagaaggaaaattcaaagaagattaacattgattagtgtttgcaagaaagttggaggaattgctct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8357904 |
ggtacatggaacttcttcaaaaactaacatcaaagagaaggaaaattcaaagaagattaacattgattagtgtttgcaagaaagttggaggaattgctct |
8358003 |
T |
|
| Q |
215 |
tattacatcacatgctgctattcttattgctttattagtggtttctt |
261 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8358004 |
tgttacatcacatgctgctattcttattgctttattagtggtttctt |
8358050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 15 - 261
Target Start/End: Complemental strand, 28593781 - 28593535
Alignment:
| Q |
15 |
aagaaagatatatatagagaacttggtttatttccatcaaaattacaaaacaatcctttgtctgttattagtacaatgcaattccatgacattcgcaata |
114 |
Q |
| |
|
||||||||||| |||||||| |||| || |||| |||||||| |||||||||| |||||||| ||||||||||||||||||||| || | |||| ||||| |
|
|
| T |
28593781 |
aagaaagatatctatagagagcttgcttcattttcatcaaaagtacaaaacaaccctttgtccgttattagtacaatgcaattcgataatattcacaata |
28593682 |
T |
|
| Q |
115 |
ggtacatggaacttcttcaaaaactaacatcaaagagaaggaaaattcaaagaagattaacattgattagtgtttgcaagaaagttggaggaattgctct |
214 |
Q |
| |
|
||||||| ||||||||||| | ||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28593681 |
ggtacattgaacttcttcatagactaacatcaaagagaaagaaaattcaaagaagattagcattgattagggtttgcaagaaagttggaggaattgctct |
28593582 |
T |
|
| Q |
215 |
tattacatcacatgctgctattcttattgctttattagtggtttctt |
261 |
Q |
| |
|
| |||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
28593581 |
tgttacatcacatggtgccattcttattgctttattagtggtttctt |
28593535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University