View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19029_low_4 (Length: 393)

Name: NF19029_low_4
Description: NF19029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19029_low_4
NF19029_low_4
[»] chr2 (4 HSPs)
chr2 (35-378)||(44220501-44220846)
chr2 (35-378)||(44208270-44208618)
chr2 (1-34)||(8851603-8851636)
chr2 (3-36)||(17850976-17851009)
[»] scaffold0176 (1 HSPs)
scaffold0176 (1-34)||(20064-20097)
[»] chr1 (7 HSPs)
chr1 (3-36)||(48105139-48105172)
chr1 (1-36)||(21687023-21687058)
chr1 (3-34)||(28633720-28633751)
chr1 (3-36)||(9347124-9347157)
chr1 (1-34)||(50615240-50615273)
chr1 (1-34)||(50623068-50623101)
chr1 (3-31)||(42611188-42611216)
[»] scaffold0460 (1 HSPs)
scaffold0460 (1-34)||(330-363)
[»] chr8 (3 HSPs)
chr8 (1-34)||(17431287-17431320)
chr8 (3-36)||(37397168-37397201)
chr8 (3-39)||(3463968-3464004)
[»] chr7 (6 HSPs)
chr7 (1-34)||(3205114-3205147)
chr7 (1-34)||(17156967-17157000)
chr7 (1-34)||(20419345-20419378)
chr7 (1-34)||(22740156-22740189)
chr7 (3-36)||(37888831-37888864)
chr7 (3-35)||(9035316-9035348)
[»] chr6 (2 HSPs)
chr6 (1-34)||(7654569-7654602)
chr6 (1-33)||(22755110-22755142)
[»] chr5 (1 HSPs)
chr5 (1-34)||(19514984-19515017)
[»] chr4 (3 HSPs)
chr4 (1-34)||(9023701-9023734)
chr4 (3-36)||(32703673-32703706)
chr4 (1-34)||(39744486-39744519)
[»] chr3 (4 HSPs)
chr3 (1-34)||(42455790-42455823)
chr3 (1-34)||(47665911-47665944)
chr3 (1-34)||(53687888-53687921)
chr3 (3-35)||(47666358-47666390)


Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 35 - 378
Target Start/End: Original strand, 44220501 - 44220846
Alignment:
Q  35 aatagaaaatatcaattgaattagtgtttatataaaactgagttctgaaaaaactttttatttactaaaactagttagcggggtataacactgcatacac 134  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44220501 aatagagaatatcaattgaattagtgtttatataaaactgagttctgaaaaaactttttatttactaaaactagttagcggggtataacactgcatacac 44220600  T
Q  135 ataattttgcatagattccttccttgactaggaaaattaagtctagatcacttgatagattgacagctcaggcatatcttctagcattcaaattcagcat 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44220601 ataattttgcatagattccttccttgactaggaaaattaagtctagatcacttgatagattgacagctcaggcatatcttctagcattcaaattcagcat 44220700  T
Q  235 tgagagtgcatatcaattatcaagagaagaagaaataagaactcaagtgattataaaaggttggcctc--aatatatttcaatgataactcaaattaata 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||    
T  44220701 tgagagtgcatatcaattatcaagagaagaagaaataagaactcaagtgattataaaaggttggcctcaaaatatatttcaatgacaactcaaattaata 44220800  T
Q  333 caacaaaagtattacatcatttatatgcttgtacatgtatcaaaag 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  44220801 caacaaaagtattacatcatttatatgcttgtacatgtatcaaaag 44220846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 35 - 378
Target Start/End: Original strand, 44208270 - 44208618
Alignment:
Q  35 aatagaaaatatcaattgaattagtgtttatataaaactgagttctgaaaaaactttttatttactaaaactagttagcggggtataacactgcatacac 134  Q
    |||||| ||||||||||| ||||||||  ||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||| |||||||||    
T  44208270 aatagagaatatcaattggattagtgt--atataaaactgagttttgaaaaaaccttttatttacaaaaactagttagcggggtataacaatgcatacac 44208367  T
Q  135 ataattttgcatagattccttccttgactaggaaaattaagtctagatcacttgatagattgacagctcaggcatatcttctagcattcaaattcagcat 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  44208368 ataattttgcatagattccttccttgactaggaaaattaagtctagatcacttgatagattgacagctcaggcatatcttctagcgtgcaaattcagcat 44208467  T
Q  235 tgagagtgcatatcaattatcaagagaaga-----agaaataagaactcaagtgattataaaagg-ttggcctc--aatatatttcaatgataactcaaa 326  Q
    | ||||||||||||||||||||||||||||     |||| | |||||| |||||||||| ||||| ||||||||  |||||||| ||||||| |||||||    
T  44208468 taagagtgcatatcaattatcaagagaagaactagagaattcagaactaaagtgattattaaaggtttggcctcaaaatatattccaatgattactcaaa 44208567  T
Q  327 ttaatacaacaaaagtattacatcatttatatgcttgtacatgtatcaaaag 378  Q
    ||||||||||||||||||||||||||||||||| ||||| || |||||||||    
T  44208568 ttaatacaacaaaagtattacatcatttatatg-ttgtatatatatcaaaag 44208618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 8851603 - 8851636
Alignment:
Q  1 gacaaactataagggggaaaagtgcaattaagcc 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  8851603 gacaaactataggggggaaaagtgcaattaagcc 8851636  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 17851009 - 17850976
Alignment:
Q  3 caaactataagggggaaaagtgcaattaagccaa 36  Q
    ||||||||| ||||||||||||||||||||||||    
T  17851009 caaactataggggggaaaagtgcaattaagccaa 17850976  T

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Target: scaffold0176 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 20064 - 20097
Alignment:
Q  1 gacaaactataagggggaaaagtgcaattaagcc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  20064 gacaaactataagggggaaaagtgcaattaagcc 20097  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 48105139 - 48105172
Alignment:
Q  3 caaactataagggggaaaagtgcaattaagccaa 36  Q
    ||||||||||||||||||||||||||||||||||    
T  48105139 caaactataagggggaaaagtgcaattaagccaa 48105172  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 21687058 - 21687023
Alignment:
Q  1 gacaaactataagggggaaaagtgcaattaagccaa 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  21687058 gacaaactataggggggaaaagtgcaattaagccaa 21687023  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 34
Target Start/End: Complemental strand, 28633751 - 28633720
Alignment:
Q  3 caaactataagggggaaaagtgcaattaagcc 34  Q
    ||||||||||||||||||||||||||||||||    
T  28633751 caaactataagggggaaaagtgcaattaagcc 28633720  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 9347157 - 9347124
Alignment:
Q  3 caaactataagggggaaaagtgcaattaagccaa 36  Q
    ||||||||| ||||||||||||||||||||||||    
T  9347157 caaactataggggggaaaagtgcaattaagccaa 9347124  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 50615273 - 50615240
Alignment:
Q  1 gacaaactataagggggaaaagtgcaattaagcc 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  50615273 gacaaactataggggggaaaagtgcaattaagcc 50615240  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 50623101 - 50623068
Alignment:
Q  1 gacaaactataagggggaaaagtgcaattaagcc 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  50623101 gacaaactataggggggaaaagtgcaattaagcc 50623068  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 42611216 - 42611188
Alignment:
Q  3 caaactataagggggaaaagtgcaattaa 31  Q
    |||||||||||||||||||||||||||||    
T  42611216 caaactataagggggaaaagtgcaattaa 42611188  T

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Target: scaffold0460 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 363 - 330
Alignment:
Q  1 gacaaactataagggggaaaagtgcaattaagcc 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  363 gacaaactataggggggaaaagtgcaattaagcc 330  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 17431320 - 17431287
Alignment:
Q  1 gacaaactataagggggaaaagtgcaattaagcc 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  17431320 gacaaactatatgggggaaaagtgcaattaagcc 17431287  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 37397168 - 37397201
Alignment:
Q  3 caaactataagggggaaaagtgcaattaagccaa 36  Q
    ||||||||| ||||||||||||||||||||||||    
T  37397168 caaactataggggggaaaagtgcaattaagccaa 37397201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 3463968 - 3464004
Alignment:
Q  3 caaactataagggggaaaagtgcaattaagccaatag 39  Q
    |||| |||| |||||||||||||||||||||||||||    
T  3463968 caaaatataggggggaaaagtgcaattaagccaatag 3464004  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 3205114 - 3205147
Alignment:
Q  1 gacaaactataagggggaaaagtgcaattaagcc 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  3205114 gacaaactataggggggaaaagtgcaattaagcc 3205147  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 17157000 - 17156967
Alignment:
Q  1 gacaaactataagggggaaaagtgcaattaagcc 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  17157000 gacaaactataggggggaaaagtgcaattaagcc 17156967  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 20419345 - 20419378
Alignment:
Q  1 gacaaactataagggggaaaagtgcaattaagcc 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  20419345 gacaaactataggggggaaaagtgcaattaagcc 20419378  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 22740189 - 22740156
Alignment:
Q  1 gacaaactataagggggaaaagtgcaattaagcc 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  22740189 gacaaactataggggggaaaagtgcaattaagcc 22740156  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 37888864 - 37888831
Alignment:
Q  3 caaactataagggggaaaagtgcaattaagccaa 36  Q
    ||||||||| ||||||||||||||||||||||||    
T  37888864 caaactataggggggaaaagtgcaattaagccaa 37888831  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 9035316 - 9035348
Alignment:
Q  3 caaactataagggggaaaagtgcaattaagcca 35  Q
    ||||||||| |||||||||||||||||||||||    
T  9035316 caaactataggggggaaaagtgcaattaagcca 9035348  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 7654569 - 7654602
Alignment:
Q  1 gacaaactataagggggaaaagtgcaattaagcc 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  7654569 gacaaactataggggggaaaagtgcaattaagcc 7654602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 22755110 - 22755142
Alignment:
Q  1 gacaaactataagggggaaaagtgcaattaagc 33  Q
    |||||||||||| ||||||||||||||||||||    
T  22755110 gacaaactataaaggggaaaagtgcaattaagc 22755142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 19514984 - 19515017
Alignment:
Q  1 gacaaactataagggggaaaagtgcaattaagcc 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  19514984 gacaaactataggggggaaaagtgcaattaagcc 19515017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 9023701 - 9023734
Alignment:
Q  1 gacaaactataagggggaaaagtgcaattaagcc 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  9023701 gacaaactataggggggaaaagtgcaattaagcc 9023734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 32703673 - 32703706
Alignment:
Q  3 caaactataagggggaaaagtgcaattaagccaa 36  Q
    ||||||||| ||||||||||||||||||||||||    
T  32703673 caaactataggggggaaaagtgcaattaagccaa 32703706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 39744486 - 39744519
Alignment:
Q  1 gacaaactataagggggaaaagtgcaattaagcc 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  39744486 gacaaactataggggggaaaagtgcaattaagcc 39744519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 42455823 - 42455790
Alignment:
Q  1 gacaaactataagggggaaaagtgcaattaagcc 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  42455823 gacaaactataggggggaaaagtgcaattaagcc 42455790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 47665944 - 47665911
Alignment:
Q  1 gacaaactataagggggaaaagtgcaattaagcc 34  Q
    |||||||||||||||| |||||||||||||||||    
T  47665944 gacaaactataaggggaaaaagtgcaattaagcc 47665911  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 53687921 - 53687888
Alignment:
Q  1 gacaaactataagggggaaaagtgcaattaagcc 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  53687921 gacaaactataggggggaaaagtgcaattaagcc 53687888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 47666358 - 47666390
Alignment:
Q  3 caaactataagggggaaaagtgcaattaagcca 35  Q
    ||||||||| |||||||||||||||||||||||    
T  47666358 caaactataggggggaaaagtgcaattaagcca 47666390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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