View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19029_low_5 (Length: 369)
Name: NF19029_low_5
Description: NF19029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19029_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 16 - 346
Target Start/End: Complemental strand, 49364354 - 49364024
Alignment:
| Q |
16 |
tcagtttgttgcaattccaaatgctcaatcaatgcttcttctcctcatccacccttgttcattcccatcccctccaattttaattctgccttttccaaac |
115 |
Q |
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| T |
49364354 |
tcagtttgttgcaattccaaatgctcaatcaatgcttcttctcctcatccacccttgttcattcccatcccctccaattttaattctgccttttccaaac |
49364255 |
T |
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| Q |
116 |
cacttattatacacacacactcttcgaaaagtaacagctatgttgttcgtgctcaaaacaatcatcatcaagataatgatgatggattttatatgagaaa |
215 |
Q |
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| T |
49364254 |
cacttattatacacacacactctccgaaaagtaacagctatgttgttcgtgctcaaaacaatcatcatcaagataatgatgatggattttatatgagaaa |
49364155 |
T |
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| Q |
216 |
aagtgttgagctagctagaaaaggtttggggtataccagtcccaatccattagttggatgtgttattgtcaaacatgaaaatattgttggtcaaggtttt |
315 |
Q |
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| T |
49364154 |
aagtgttgagctagctagaaaaggtttggggtataccagtcccaatccattagttggatgtgttattgtcaaacatggaaatattgttggtcaaggtttt |
49364055 |
T |
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| Q |
316 |
catcctaaacccggccaacctcatgccgagg |
346 |
Q |
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| T |
49364054 |
catcctaaacccggccaacctcatgccgagg |
49364024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 63 - 173
Target Start/End: Complemental strand, 1560699 - 1560589
Alignment:
| Q |
63 |
tccacccttgttcattcccatcccctccaattttaattctgccttttccaaaccacttattatacacacacactcttcgaaaagtaacagctatgttgtt |
162 |
Q |
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| T |
1560699 |
tccaccttcgttcattcgcagcccctccaattttaattatgccttttccaaaccacttattatgtatagacactcttgaaagaataacgactatgttgtt |
1560600 |
T |
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| Q |
163 |
cgtgctcaaaa |
173 |
Q |
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| T |
1560599 |
cgtgctcaaaa |
1560589 |
T |
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