View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19029_low_6 (Length: 349)

Name: NF19029_low_6
Description: NF19029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19029_low_6
NF19029_low_6
[»] chr2 (21 HSPs)
chr2 (12-265)||(7862693-7862946)
chr2 (180-270)||(37053527-37053619)
chr2 (49-139)||(13866937-13867029)
chr2 (180-218)||(11513885-11513923)
chr2 (182-219)||(39983328-39983365)
chr2 (188-235)||(1899868-1899915)
chr2 (182-246)||(17952748-17952814)
chr2 (47-128)||(26143559-26143639)
chr2 (180-218)||(5043605-5043643)
chr2 (297-331)||(7862643-7862677)
chr2 (171-270)||(10143105-10143206)
chr2 (182-220)||(18179287-18179325)
chr2 (48-135)||(4550810-4550899)
chr2 (48-135)||(15120246-15120335)
chr2 (84-128)||(41905871-41905916)
chr2 (182-218)||(15780064-15780100)
chr2 (182-218)||(18066115-18066151)
chr2 (182-218)||(25800816-25800852)
chr2 (174-218)||(33942137-33942181)
chr2 (182-214)||(34926955-34926987)
chr2 (50-136)||(43456627-43456715)
[»] chr8 (14 HSPs)
chr8 (49-135)||(2487927-2488015)
chr8 (49-128)||(8060739-8060819)
chr8 (182-218)||(9834836-9834872)
chr8 (183-219)||(35869823-35869859)
chr8 (182-234)||(29973050-29973104)
chr8 (171-218)||(31884581-31884628)
chr8 (49-113)||(14926901-14926967)
chr8 (172-218)||(34770879-34770925)
chr8 (182-219)||(24558839-24558876)
chr8 (162-219)||(44865591-44865648)
chr8 (183-219)||(1117331-1117366)
chr8 (42-128)||(7918694-7918781)
chr8 (162-218)||(8062511-8062567)
chr8 (42-136)||(9700063-9700159)
[»] chr4 (14 HSPs)
chr4 (162-268)||(8422866-8422972)
chr4 (48-135)||(54277241-54277330)
chr4 (55-128)||(18628478-18628553)
chr4 (151-246)||(49219096-49219193)
chr4 (91-136)||(2996635-2996680)
chr4 (183-219)||(24444024-24444060)
chr4 (150-218)||(30207586-30207654)
chr4 (48-135)||(7367972-7368061)
chr4 (182-219)||(9841052-9841089)
chr4 (183-219)||(11842201-11842237)
chr4 (182-218)||(18630667-18630703)
chr4 (48-119)||(19304626-19304698)
chr4 (93-137)||(27123317-27123361)
chr4 (182-218)||(42866055-42866091)
[»] chr6 (11 HSPs)
chr6 (91-134)||(8348290-8348333)
chr6 (180-246)||(1402953-1403021)
chr6 (188-269)||(10452413-10452496)
chr6 (183-219)||(11340673-11340709)
chr6 (180-219)||(24838788-24838827)
chr6 (180-218)||(5623143-5623181)
chr6 (185-218)||(7485118-7485151)
chr6 (93-137)||(2460116-2460160)
chr6 (173-213)||(2727894-2727934)
chr6 (182-218)||(4006701-4006737)
chr6 (49-92)||(13908347-13908391)
[»] chr5 (12 HSPs)
chr5 (180-270)||(39257432-39257523)
chr5 (180-218)||(2568645-2568683)
chr5 (47-92)||(17369310-17369356)
chr5 (50-114)||(21782576-21782642)
chr5 (60-131)||(12407660-12407733)
chr5 (188-270)||(32059642-32059725)
chr5 (182-219)||(34117583-34117620)
chr5 (182-219)||(34205225-34205262)
chr5 (187-233)||(41017697-41017745)
chr5 (211-272)||(7096203-7096266)
chr5 (183-219)||(18704084-18704120)
chr5 (185-246)||(39823171-39823234)
[»] chr7 (10 HSPs)
chr7 (49-133)||(23214920-23215006)
chr7 (49-128)||(22387815-22387896)
chr7 (49-139)||(46281061-46281151)
chr7 (191-270)||(5373158-5373239)
chr7 (185-272)||(9527140-9527229)
chr7 (177-219)||(25558233-25558275)
chr7 (177-219)||(25558431-25558473)
chr7 (71-139)||(33645902-33645972)
chr7 (187-219)||(24909650-24909682)
chr7 (187-219)||(25507335-25507367)
[»] chr1 (24 HSPs)
chr1 (184-250)||(28467356-28467424)
chr1 (49-136)||(34536220-34536309)
chr1 (182-218)||(12564921-12564957)
chr1 (182-218)||(25005844-25005880)
chr1 (182-218)||(25006081-25006117)
chr1 (47-128)||(4033934-4034017)
chr1 (180-219)||(4078194-4078233)
chr1 (51-128)||(5157142-5157221)
chr1 (151-235)||(45205036-45205122)
chr1 (51-139)||(4549462-4549552)
chr1 (180-218)||(8130423-8130461)
chr1 (171-213)||(42556667-42556709)
chr1 (48-100)||(3052618-3052671)
chr1 (49-136)||(4868462-4868550)
chr1 (180-217)||(17422983-17423020)
chr1 (182-219)||(23902114-23902151)
chr1 (47-102)||(24460318-24460375)
chr1 (151-216)||(25479570-25479635)
chr1 (207-269)||(42336596-42336660)
chr1 (182-235)||(44940311-44940364)
chr1 (182-218)||(7218121-7218157)
chr1 (182-218)||(17269237-17269273)
chr1 (180-233)||(27887163-27887218)
chr1 (182-235)||(39348014-39348069)
[»] scaffold0549 (2 HSPs)
scaffold0549 (183-219)||(1772-1808)
scaffold0549 (183-219)||(3862-3898)
[»] chr3 (14 HSPs)
chr3 (51-136)||(1395701-1395788)
chr3 (183-218)||(41057025-41057060)
chr3 (180-215)||(43875638-43875673)
chr3 (52-139)||(3758060-3758149)
chr3 (48-135)||(21574553-21574644)
chr3 (197-267)||(28779292-28779364)
chr3 (94-139)||(29113521-29113566)
chr3 (93-134)||(40880913-40880954)
chr3 (49-132)||(50211801-50211886)
chr3 (182-218)||(21872318-21872354)
chr3 (182-218)||(22214706-22214742)
chr3 (93-133)||(25182952-25182992)
chr3 (182-218)||(33405214-33405250)
chr3 (150-218)||(36646397-36646465)
[»] scaffold0153 (2 HSPs)
scaffold0153 (200-246)||(6563-6611)
scaffold0153 (200-246)||(13583-13631)


Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 12 - 265
Target Start/End: Complemental strand, 7862946 - 7862693
Alignment:
Q  12 aagaaaataaaaaacacatttctttataacaaggccctgtttggattgacttatttgaattatctactgacgtaaacactttgagactgttcgagagagc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7862946 aagaaaataaaaaacacatttctttataacaaggccctgtttggattgacttatttgaattatctactgacgtaaacactttgagactgttcgagagagc 7862847  T
Q  112 ttacgaaaacaacttataacatgtctattgtcctcaatctgttttcaacatatttgcaaaaactctgtatgatagcttatgaaaccaacttatagcttat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7862846 ttacgaaaacaacttataacatgtctattgtcctcaatctgttttcaacatatttgcaaaaactctgtatgatagcttatgaaaccaacttatagcttat 7862747  T
Q  212 atgaaaatggtgactttattttattttatgttatacacacagcctatacataag 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7862746 atgaaaatggtgactttattttattttatgttatacacacagcctatacataag 7862693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 270
Target Start/End: Complemental strand, 37053619 - 37053527
Alignment:
Q  180 atgatagcttatgaaaccaacttatagcttatatgaaaatggt--gactttattttattttatgttatacacacagcctatacataagcactt 270  Q
    ||||||||| ||||||  |||||||| ||||||||||||  ||  |||||||||||||||| ||||||| | | || ||||||||||||||||    
T  37053619 atgatagctaatgaaaaaaacttataacttatatgaaaacagtttgactttattttattttctgttatagaaatagtctatacataagcactt 37053527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 139
Target Start/End: Complemental strand, 13867029 - 13866937
Alignment:
Q  49 tgtttggattgacttatttga-attatctactgacgtaaacactt-tgagactgttcgagagagcttacgaaaacaacttataacatgtctat 139  Q
    ||||||||||||| |||||||  |||||||||| | ||||||||| |||||||||| |||||| |||| ||||||||| ||| ||||| ||||    
T  13867029 tgtttggattgacctatttgagcttatctactgccataaacacttgtgagactgtttgagagaacttaagaaaacaacctatgacatgcctat 13866937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 11513923 - 11513885
Alignment:
Q  180 atgatagcttatgaaaccaacttatagcttatatgaaaa 218  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  11513923 atgatagcttatgaaaacaacttatagcttatatgaaaa 11513885  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 39983365 - 39983328
Alignment:
Q  182 gatagcttatgaaaccaacttatagcttatatgaaaat 219  Q
    |||||||||||||| |||||||||||||||||||||||    
T  39983365 gatagcttatgaaaacaacttatagcttatatgaaaat 39983328  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 1899915 - 1899868
Alignment:
Q  188 ttatgaaaccaacttatagcttatatgaaaatggtgactttattttat 235  Q
    |||||||| |||||||||||||||| ||||||  ||||||||||||||    
T  1899915 ttatgaaaacaacttatagcttataagaaaataatgactttattttat 1899868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 17952748 - 17952814
Alignment:
Q  182 gatagcttatgaaaccaacttatagcttatatgaaaatgg--tgactttattttattttatgttata 246  Q
    |||||||||||||| || ||| |||||||||||||||| |  |||||||||||||| || |||||||    
T  17952748 gatagcttatgaaaacatcttgtagcttatatgaaaatagtttgactttattttatcttttgttata 17952814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 26143559 - 26143639
Alignment:
Q  47 cctgtttggattgacttatttgaa-ttatctactgacgtaaacactttgagactgttcgagagagcttacgaaaacaacttat 128  Q
    ||||||||||||| ||| |||||  |||||||||||| ||||   |||||||||||| | |||| ||||||||||||||||||    
T  26143559 cctgtttggattggcttgtttgagcttatctactgacataaat--tttgagactgtttgggagaacttacgaaaacaacttat 26143639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 218
Target Start/End: Original strand, 5043605 - 5043643
Alignment:
Q  180 atgatagcttatgaaaccaacttatagcttatatgaaaa 218  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  5043605 atgatagcttatgaaaacaacttctagcttatatgaaaa 5043643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 331
Target Start/End: Complemental strand, 7862677 - 7862643
Alignment:
Q  297 gggttgacttatttgagcttgtcgaataccataag 331  Q
    ||||||||||||||||||||||||||| |||||||    
T  7862677 gggttgacttatttgagcttgtcgaatgccataag 7862643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 270
Target Start/End: Complemental strand, 10143206 - 10143105
Alignment:
Q  171 aaactctgtatgatagcttatgaaaccaacttatagcttatatgaaaatgg--tgactttattttattttatgttatacacacagcctatacataagcac 268  Q
    |||||||  ||||||||||||||||  |||||||||||||||| ||||  |  |||||| ||||||| || ||||||| | | | | |||||||||||||    
T  10143206 aaactctccatgatagcttatgaaaaaaacttatagcttatataaaaacagtttgacttaattttatcttttgttatagaaataacttatacataagcac 10143107  T
Q  269 tt 270  Q
    ||    
T  10143106 tt 10143105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 18179287 - 18179325
Alignment:
Q  182 gatagcttatgaaaccaacttatagcttatatgaaaatg 220  Q
    |||||||||||||| || |||||||||||||||||||||    
T  18179287 gatagcttatgaaagcagcttatagcttatatgaaaatg 18179325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 135
Target Start/End: Complemental strand, 4550899 - 4550810
Alignment:
Q  48 ctgtttggattgacttatttgaat-tatctactgacgtaaacactt-tgagactgttcgagagagcttacgaaaacaacttataacatgt 135  Q
    ||||||||||||||| |||||| | || || ||||||||||||||  || ||||||| | ||||||||| | ||||||||||| ||||||    
T  4550899 ctgtttggattgactaatttgagtatacctgctgacgtaaacactgatgcgactgtttgggagagcttatggaaacaacttatgacatgt 4550810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 135
Target Start/End: Complemental strand, 15120335 - 15120246
Alignment:
Q  48 ctgtttggattgacttatttgaa-ttatctactgacgtaaacactt-tgagactgttcgagagagcttacgaaaacaacttataacatgt 135  Q
    ||||||||||||||||||||||| |||||||||  | |||||| || |||  ||||| | ||||||||| | ||||||||||| ||||||    
T  15120335 ctgtttggattgacttatttgaacttatctactagcataaacagttgtgaatctgtttgggagagcttatggaaacaacttatgacatgt 15120246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 41905871 - 41905916
Alignment:
Q  84 taaacactt-tgagactgttcgagagagcttacgaaaacaacttat 128  Q
    ||||||||| ||||||| |||||||||||||| |||||||||||||    
T  41905871 taaacacttatgagactcttcgagagagcttatgaaaacaacttat 41905916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 15780100 - 15780064
Alignment:
Q  182 gatagcttatgaaaccaacttatagcttatatgaaaa 218  Q
    |||||||||||||| |||||||||| |||||||||||    
T  15780100 gatagcttatgaaaacaacttatagattatatgaaaa 15780064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 18066151 - 18066115
Alignment:
Q  182 gatagcttatgaaaccaacttatagcttatatgaaaa 218  Q
    |||||||||||||| || |||||||||||||||||||    
T  18066151 gatagcttatgaaaacagcttatagcttatatgaaaa 18066115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 25800852 - 25800816
Alignment:
Q  182 gatagcttatgaaaccaacttatagcttatatgaaaa 218  Q
    |||||||||||||| || |||||||||||||||||||    
T  25800852 gatagcttatgaaaacagcttatagcttatatgaaaa 25800816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 33942181 - 33942137
Alignment:
Q  174 ctctgtatgatagcttatgaaaccaacttatagcttatatgaaaa 218  Q
    |||| |||||| |||||||||| |||||||||||||| |||||||    
T  33942181 ctctctatgatggcttatgaaaacaacttatagcttacatgaaaa 33942137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 214
Target Start/End: Complemental strand, 34926987 - 34926955
Alignment:
Q  182 gatagcttatgaaaccaacttatagcttatatg 214  Q
    |||||||||||||| ||||||||||||||||||    
T  34926987 gatagcttatgaaaacaacttatagcttatatg 34926955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 136
Target Start/End: Original strand, 43456627 - 43456715
Alignment:
Q  50 gtttggattgacttatttgaa-ttatctactgacgtaaacactt-tgagactgttcgagagagcttacgaaaacaacttataacatgtc 136  Q
    ||||||||| ||||||||||| |||| |||| || ||||||||| | |||||||| || |||||||  |||||||||| || |||||||    
T  43456627 gtttggatttacttatttgaacttatttactcacataaacacttgtaagactgtttgaaagagcttgtgaaaacaactcatgacatgtc 43456715  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 2487927 - 2488015
Alignment:
Q  49 tgtttggattgacttatttgaatt-atctactgacgtaaacactt-tgagactgttcgagagagcttacgaaaacaacttataacatgt 135  Q
    ||||||||||| ||||||||| || |||||||||| ||| ||||| |||||||||| | |||| |||| ||||||||||||||||||||    
T  2487927 tgtttggattggcttatttgagttcatctactgacataagcacttgtgagactgtttgggagaacttatgaaaacaacttataacatgt 2488015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 8060819 - 8060739
Alignment:
Q  49 tgtttggattgacttatttgaat-tatctactgacgtaaacactttgagactgttcgagagagcttacgaaaacaacttat 128  Q
    |||||||||||||||||||||   |||||| |||| ||||||||| || |||||| ||||||||||| |||||||| ||||    
T  8060819 tgtttggattgacttatttgagcatatctattgacataaacacttcgaaactgtttgagagagcttatgaaaacaaattat 8060739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 9834836 - 9834872
Alignment:
Q  182 gatagcttatgaaaccaacttatagcttatatgaaaa 218  Q
    |||||||||||||| ||||||||||||||||||||||    
T  9834836 gatagcttatgaaaacaacttatagcttatatgaaaa 9834872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 35869859 - 35869823
Alignment:
Q  183 atagcttatgaaaccaacttatagcttatatgaaaat 219  Q
    ||||||||||||| |||||||||||||||||||||||    
T  35869859 atagcttatgaaaacaacttatagcttatatgaaaat 35869823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 29973104 - 29973050
Alignment:
Q  182 gatagcttatgaaaccaacttatagcttatatgaaaatgg--tgactttatttta 234  Q
    |||||||||||||| ||||||||||||||| ||||||| |  |||||||||||||    
T  29973104 gatagcttatgaaaacaacttatagcttatgtgaaaatagtttgactttatttta 29973050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 31884628 - 31884581
Alignment:
Q  171 aaactctgtatgatagcttatgaaaccaacttatagcttatatgaaaa 218  Q
    |||||||  |||||||||||||||| ||| ||||||||||||||||||    
T  31884628 aaactctccatgatagcttatgaaaacaatttatagcttatatgaaaa 31884581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 14926901 - 14926967
Alignment:
Q  49 tgtttggattgacttatttgaa-ttatctactgacgtaaacactt-tgagactgttcgagagagctt 113  Q
    |||||||||||||||||||||| |||| ||||| | ||| ||||| |||||||||| ||||||||||    
T  14926901 tgtttggattgacttatttgaacttatttactggcataagcacttgtgagactgtttgagagagctt 14926967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 34770925 - 34770879
Alignment:
Q  172 aactctgtatgatagcttatgaaaccaacttatagcttatatgaaaa 218  Q
    |||||| || |||||||||||||| |||||||||||||| |||||||    
T  34770925 aactctctaggatagcttatgaaaacaacttatagcttaaatgaaaa 34770879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 24558876 - 24558839
Alignment:
Q  182 gatagcttatgaaaccaacttatagcttatatgaaaat 219  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  24558876 gatagcttatgaaaacaacttatagcttatacgaaaat 24558839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 44865591 - 44865648
Alignment:
Q  162 tatttgcaaaaactctgtatgatagcttatgaaaccaacttatagcttatatgaaaat 219  Q
    ||||| || ||||||| ||  ||||||||| |||||| ||||||||||||||||||||    
T  44865591 tatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaat 44865648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 1117366 - 1117331
Alignment:
Q  183 atagcttatgaaaccaacttatagcttatatgaaaat 219  Q
    |||||||||||||| ||||||||||||||||||||||    
T  1117366 atagcttatgaaac-aacttatagcttatatgaaaat 1117331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 128
Target Start/End: Original strand, 7918694 - 7918781
Alignment:
Q  42 aaggccctgtttggattgacttatttgaa-ttatctactgacgtaaacactt-tgagactgttcgagagagcttacgaaaacaacttat 128  Q
    |||| |||||||| ||||| |||||| || |||||||||  | ||||||||| |||||||||| | ||||||||| |||||||||||||    
T  7918694 aagggcctgtttgaattga-ttatttaaacttatctactagcataaacacttgtgagactgtttgggagagcttatgaaaacaacttat 7918781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 8062567 - 8062511
Alignment:
Q  162 tatttgcaaaaactctgtatgatagcttatgaaaccaacttatagcttatatgaaaa 218  Q
    ||||| || ||||||| || |||||||||||| | || |||||||||||||||||||    
T  8062567 tattttcataaactctctaagatagcttatgagaacatcttatagcttatatgaaaa 8062511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 9700159 - 9700063
Alignment:
Q  42 aaggccctgtttggattgacttatttga-attatctactgacgtaaacactt-tgagactgttcgagagagcttacgaaaacaacttataacatgtc 136  Q
    |||| |||||||||||| ||||||||||  |||||||||  | ||||||||| ||||||| || ||||||||||  |||| ||| |||| |||||||    
T  9700159 aagggcctgtttggattaacttatttgagcttatctactagcataaacacttgtgagactatttgagagagcttgtgaaatcaatttatgacatgtc 9700063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 162 - 268
Target Start/End: Original strand, 8422866 - 8422972
Alignment:
Q  162 tatttgcaaaaactctgtatgatagcttatgaaaccaacttatagcttatatgaaaatggtgactttattttattttatgttatacacacagcctataca 261  Q
    |||||||| |||||||  | ||||| || ||||| ||||||||||||||||||||||   |||||||||||||| || | ||||| | | ||| ||||||    
T  8422866 tatttgcataaactctccaagatagattgtgaaaacaacttatagcttatatgaaaacaatgactttattttatctttttttataaaaatagcttataca 8422965  T
Q  262 taagcac 268  Q
    |||||||    
T  8422966 taagcac 8422972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 135
Target Start/End: Original strand, 54277241 - 54277330
Alignment:
Q  48 ctgtttggattgacttatttgaa-ttatctactgacgtaaacactt-tgagactgttcgagagagcttacgaaaacaacttataacatgt 135  Q
    |||||| |||||||||||||||| ||||||| |||| ||||||||| |||||||||| | ||||||||||  ||||| ||||| ||||||    
T  54277241 ctgtttagattgacttatttgaacttatctagtgacataaacacttatgagactgttagcgagagcttacagaaacagcttatcacatgt 54277330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 18628478 - 18628553
Alignment:
Q  55 gattgacttatttgaa-ttatctactgacgtaaacactt-tgagactgttcgagagagcttacgaaaacaacttat 128  Q
    ||||||| |||||||  |||||||||||| ||||||||| |||||||||| | ||||||||| |||||||||||||    
T  18628478 gattgacgtatttgagcttatctactgacataaacacttgtgagactgtttgggagagcttatgaaaacaacttat 18628553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 246
Target Start/End: Complemental strand, 49219193 - 49219096
Alignment:
Q  151 tgttttcaacatatttgcaaaaactctgtatgatagcttatgaaaccaacttatagcttatatgaaaat--ggtgactttattttattttatgttata 246  Q
    |||||||| | ||||| || || |||| || ||||| |||||||| |||||||||||||||||||||||    |||||||||||||| || |||||||    
T  49219193 tgttttcagcttatttccataatctctttaagatagtttatgaaaacaacttatagcttatatgaaaataatttgactttattttatattttgttata 49219096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 2996680 - 2996635
Alignment:
Q  91 tttgagactgttcgagagagcttacgaaaacaacttataacatgtc 136  Q
    |||||||||||| ||||||||||| ||||||||||||| |||||||    
T  2996680 tttgagactgtttgagagagcttatgaaaacaacttatgacatgtc 2996635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 24444060 - 24444024
Alignment:
Q  183 atagcttatgaaaccaacttatagcttatatgaaaat 219  Q
    ||||||||||||| |||||||||||||||||||||||    
T  24444060 atagcttatgaaaacaacttatagcttatatgaaaat 24444024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 30207586 - 30207654
Alignment:
Q  150 ctgttttcaacatatttgcaaaaactctgtatgatagcttatgaaaccaacttatagcttatatgaaaa 218  Q
    ||||||||| | ||||| || || |||| || | |||||||||||| ||||||||||||||||||||||    
T  30207586 ctgttttcagcttatttccataatctctctaaggtagcttatgaaaacaacttatagcttatatgaaaa 30207654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 135
Target Start/End: Original strand, 7367972 - 7368061
Alignment:
Q  48 ctgtttggattgacttatttga-attatctactgacgtaaacactt-tgagactgttcgagagagcttacgaaaacaacttataacatgt 135  Q
    ||||||||||||||||||||||  |||||||| | | ||||| ||| |||||||||| | ||||||| | ||||||| ||||| ||||||    
T  7367972 ctgtttggattgacttatttgagtttatctacaggcataaacgcttgtgagactgtttgggagagctcatgaaaacagcttatgacatgt 7368061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 9841089 - 9841052
Alignment:
Q  182 gatagcttatgaaaccaacttatagcttatatgaaaat 219  Q
    |||||||||||||| || ||||||||||||||||||||    
T  9841089 gatagcttatgaaaacatcttatagcttatatgaaaat 9841052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 11842237 - 11842201
Alignment:
Q  183 atagcttatgaaaccaacttatagcttatatgaaaat 219  Q
    |||| |||||||| |||||||||||||||||||||||    
T  11842237 atagtttatgaaaacaacttatagcttatatgaaaat 11842201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 18630703 - 18630667
Alignment:
Q  182 gatagcttatgaaaccaacttatagcttatatgaaaa 218  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  18630703 gatagcttgtgaaaacaacttatagcttatatgaaaa 18630667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 19304698 - 19304626
Alignment:
Q  48 ctgtttggattgacttatttgaattatctactgacgtaaacact-ttgagactgttcgagagagcttacgaaa 119  Q
    |||||| |||||||||||||||||||||||||  | ||||||||  |||||| ||  | ||||||||||||||    
T  19304698 ctgtttagattgacttatttgaattatctacttgcataaacactagtgagacagtgtgggagagcttacgaaa 19304626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 27123317 - 27123361
Alignment:
Q  93 tgagactgttcgagagagcttacgaaaacaacttataacatgtct 137  Q
    |||||||||| ||||||||||| | ||||||||||| ||||||||    
T  27123317 tgagactgtttgagagagcttatggaaacaacttatgacatgtct 27123361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 42866091 - 42866055
Alignment:
Q  182 gatagcttatgaaaccaacttatagcttatatgaaaa 218  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  42866091 gatagcttatgaaaacaacttatagcttatataaaaa 42866055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 134
Target Start/End: Complemental strand, 8348333 - 8348290
Alignment:
Q  91 tttgagactgttcgagagagcttacgaaaacaacttataacatg 134  Q
    ||||| |||||| |||||||||||||||||||||||||||||||    
T  8348333 tttgatactgtttgagagagcttacgaaaacaacttataacatg 8348290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 1403021 - 1402953
Alignment:
Q  180 atgatagcttatgaaaccaacttatagcttatatgaaaatgg--tgactttattttattttatgttata 246  Q
    |||||||||||||||| ||| ||||||||||||||||||| |  | |||||||||||| || |||||||    
T  1403021 atgatagcttatgaaaacaatttatagcttatatgaaaatagtttaactttattttatcttttgttata 1402953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 269
Target Start/End: Original strand, 10452413 - 10452496
Alignment:
Q  188 ttatgaaaccaacttatagcttatatgaaaatgg--tgactttattttattttatgttatacacacagcctatacataagcact 269  Q
    ||||| || ||||||||||||||||||||||| |  ||| |||||||||| || ||||||| | | ||| ||||||||||||||    
T  10452413 ttatggaaacaacttatagcttatatgaaaatagtttgattttattttatattttgttatagaaatagcttatacataagcact 10452496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 11340673 - 11340709
Alignment:
Q  183 atagcttatgaaaccaacttatagcttatatgaaaat 219  Q
    ||||||||||||||||||||||||| |||||||||||    
T  11340673 atagcttatgaaaccaacttatagcgtatatgaaaat 11340709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 24838788 - 24838827
Alignment:
Q  180 atgatagcttatgaaaccaacttatagcttatatgaaaat 219  Q
    |||||||||||||||| || ||||||||||||||||||||    
T  24838788 atgatagcttatgaaatcagcttatagcttatatgaaaat 24838827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 5623181 - 5623143
Alignment:
Q  180 atgatagcttatgaaaccaacttatagcttatatgaaaa 218  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  5623181 atgatagcttatgaaaacaacttatagtttatatgaaaa 5623143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 218
Target Start/End: Original strand, 7485118 - 7485151
Alignment:
Q  185 agcttatgaaaccaacttatagcttatatgaaaa 218  Q
    ||||||||||| ||||||||||||||||||||||    
T  7485118 agcttatgaaaacaacttatagcttatatgaaaa 7485151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 2460116 - 2460160
Alignment:
Q  93 tgagactgttcgagagagcttacgaaaacaacttataacatgtct 137  Q
    |||||||||| ||||||||||| | ||||||||||| ||||||||    
T  2460116 tgagactgtttgagagagcttatggaaacaacttatgacatgtct 2460160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 2727894 - 2727934
Alignment:
Q  173 actctgtatgatagcttatgaaaccaacttatagcttatat 213  Q
    ||||| || |||||||||||||| |||||||||||||||||    
T  2727894 actctctaggatagcttatgaaaacaacttatagcttatat 2727934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 4006737 - 4006701
Alignment:
Q  182 gatagcttatgaaaccaacttatagcttatatgaaaa 218  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  4006737 gatagcttatgaaaacaacttatagcttatataaaaa 4006701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 13908391 - 13908347
Alignment:
Q  49 tgtttggattgacttatttgaa-ttatctactgacgtaaacactt 92  Q
    |||||| ||||||||||||||| |||||||||||| |||||||||    
T  13908391 tgtttgaattgacttatttgaacttatctactgacataaacactt 13908347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 270
Target Start/End: Original strand, 39257432 - 39257523
Alignment:
Q  180 atgatagcttatgaaaccaacttatagcttatatgaaaatg-gtgactttattttattttatgttatacacacagcctatacataagcactt 270  Q
    ||||| |||||||||| |||||||||| ||||||||||| |  |||||||||||||  || ||||||| | | ||| |||||||||||||||    
T  39257432 atgattgcttatgaaaacaacttatagtttatatgaaaaggtttgactttattttaccttttgttatagagatagcatatacataagcactt 39257523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 2568683 - 2568645
Alignment:
Q  180 atgatagcttatgaaaccaacttatagcttatatgaaaa 218  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  2568683 atgatagcttatgaaaacaacttatagcttatacgaaaa 2568645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 17369356 - 17369310
Alignment:
Q  47 cctgtttggattgacttatttgaa-ttatctactgacgtaaacactt 92  Q
    |||||||||||||||||||||||| |||||||||||| ||| |||||    
T  17369356 cctgtttggattgacttatttgaacttatctactgacataatcactt 17369310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 21782576 - 21782642
Alignment:
Q  50 gtttggattgacttatttg-aattatctactgacgtaaacactt-tgagactgttcgagagagctta 114  Q
    |||||| |||||||||||| |||||||||||| | ||||||||| |||| ||||| |||||||||||    
T  21782576 gtttggcttgacttatttgaaattatctactggcataaacacttgtgaggctgtttgagagagctta 21782642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 12407660 - 12407733
Alignment:
Q  60 acttatttgaa-ttatctactgacgtaaacactt-tgagactgttcgagagagcttacgaaaacaacttataac 131  Q
    ||||||||||| ||||||| |||| ||||||||| |||||| ||| ||||||||||| |||||  |||||||||    
T  12407660 acttatttgaacttatctattgacataaacacttgtgagacggtttgagagagcttatgaaaatgacttataac 12407733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 270
Target Start/End: Original strand, 32059642 - 32059725
Alignment:
Q  188 ttatgaaaccaacttatagcttatatgaaaatgg--tgactttattttattttatgttatacacacagcctatacataagcactt 270  Q
    |||||||| || |||||||||||||||||||  |  |||||||||||||| ||| |||| | | ||||| |||||||||||||||    
T  32059642 ttatgaaaacagcttatagcttatatgaaaacagtttgactttattttatctta-gttacaaaaacagcttatacataagcactt 32059725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 34117583 - 34117620
Alignment:
Q  182 gatagcttatgaaaccaacttatagcttatatgaaaat 219  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  34117583 gatagcttatgaaagcaacttatagcttatatgtaaat 34117620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 34205262 - 34205225
Alignment:
Q  182 gatagcttatgaaaccaacttatagcttatatgaaaat 219  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  34205262 gatagcttatgaaaacaacttatagcttatataaaaat 34205225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 41017745 - 41017697
Alignment:
Q  187 cttatgaaaccaacttatagcttatatgaaaatgg--tgactttatttt 233  Q
    ||||||||| |||||||||||||||| ||||||||  ||||||||||||    
T  41017745 cttatgaaaacaacttatagcttataggaaaatggtttgactttatttt 41017697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 7096203 - 7096266
Alignment:
Q  211 tatgaaaatggt--gactttattttattttatgttatacacacagcctatacataagcacttgt 272  Q
    ||||||||||||  ||||||||||||| || ||||||| | | ||| |||||||||||||||||    
T  7096203 tatgaaaatggtttgactttattttatcttttgttatagaaatagcttatacataagcacttgt 7096266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 18704084 - 18704120
Alignment:
Q  183 atagcttatgaaaccaacttatagcttatatgaaaat 219  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  18704084 atagcttatgaaaacaacttatagcttatataaaaat 18704120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 39823171 - 39823234
Alignment:
Q  185 agcttatgaaaccaacttatagcttatatgaaaatgg--tgactttattttattttatgttata 246  Q
    ||||||||||| |||||| |||||||||||||| | |  |||||||||||||| || |||||||    
T  39823171 agcttatgaaaacaacttgtagcttatatgaaagtagtttgactttattttatcttttgttata 39823234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 133
Target Start/End: Complemental strand, 23215006 - 23214920
Alignment:
Q  49 tgtttggattgacttatttgaa-ttatctactgacgtaaacactt-tgagactgttcgagagagcttacgaaaacaacttataacat 133  Q
    |||||||||||||||||||||  |||||||||  | ||||||||| |||||||||| ||||||  ||| ||||||||||||| ||||    
T  23215006 tgtttggattgacttatttgaccttatctactagcataaacacttatgagactgtttgagagaatttatgaaaacaacttatgacat 23214920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 22387815 - 22387896
Alignment:
Q  49 tgtttggattgacttatttgaa-ttatctactgacgtaaacactt-tgagactgttcgagagagcttacgaaaacaacttat 128  Q
    |||||||||||||||| | ||| |||| ||||||| ||||||| | |||||||||| | ||||||||| |||||||||||||    
T  22387815 tgtttggattgacttactagaacttatttactgacataaacacgtgtgagactgtttgggagagcttatgaaaacaacttat 22387896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 139
Target Start/End: Original strand, 46281061 - 46281151
Alignment:
Q  49 tgtttggattgacttatttgaa-ttatctactgacgtaaacactttgagactgttcgagagagcttacgaaaacaacttataacatgtctat 139  Q
    ||||||||||| |||||||||| ||||||||| || ||||||||||  || |||| || |||| ||||| |||||||||||  |||||||||    
T  46281061 tgtttggattggcttatttgaacttatctactaacataaacacttt-tgagtgtttgaaagagtttacggaaacaacttatgccatgtctat 46281151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 270
Target Start/End: Complemental strand, 5373239 - 5373158
Alignment:
Q  191 tgaaaccaacttatagcttatatgaaaatggt--gactttattttattttatgttatacacacagcctatacataagcactt 270  Q
    ||||| ||||||||| ||||||| |||||| |  ||||||||||||| || ||||||| | | ||| |||||||||||||||    
T  5373239 tgaaaacaacttataacttatataaaaatgtttggactttattttatcttttgttatagaaatagcatatacataagcactt 5373158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 272
Target Start/End: Original strand, 9527140 - 9527229
Alignment:
Q  185 agcttatgaaaccaacttatagcttatatgaaaatgg--tgactttattttattttatgttatacacacagcctatacataagcacttgt 272  Q
    ||||||||||| |||||||||| |||||||||||  |  |||||||||| ||| || ||||||| | | ||| |||| ||||||||||||    
T  9527140 agcttatgaaaacaacttatagtttatatgaaaacagtttgactttattatatcttttgttatagatatagcgtatatataagcacttgt 9527229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 25558233 - 25558275
Alignment:
Q  177 tgtatgatagcttatgaaaccaacttatagcttatatgaaaat 219  Q
    |||| |||| ||||||||| |||||||||||||||||||||||    
T  25558233 tgtaggataacttatgaaaacaacttatagcttatatgaaaat 25558275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 25558431 - 25558473
Alignment:
Q  177 tgtatgatagcttatgaaaccaacttatagcttatatgaaaat 219  Q
    |||| |||| ||||||||| |||||||||||||||||||||||    
T  25558431 tgtaggataacttatgaaaacaacttatagcttatatgaaaat 25558473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 33645902 - 33645972
Alignment:
Q  71 ttatctactgacgtaaacactt-tgagactg-ttcgagagagcttacgaaaacaacttataacatgtctat 139  Q
    ||||||| ||||||||| |||| |||||||| || ||||||||||| | ||||||||||| ||||||||||    
T  33645902 ttatctattgacgtaaaaacttgtgagactggttggagagagcttatggaaacaacttatgacatgtctat 33645972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 24909682 - 24909650
Alignment:
Q  187 cttatgaaaccaacttatagcttatatgaaaat 219  Q
    ||||||||| |||||||||||||||||||||||    
T  24909682 cttatgaaaacaacttatagcttatatgaaaat 24909650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 25507367 - 25507335
Alignment:
Q  187 cttatgaaaccaacttatagcttatatgaaaat 219  Q
    ||||||||| |||||||||||||||||||||||    
T  25507367 cttatgaaaacaacttatagcttatatgaaaat 25507335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 250
Target Start/End: Original strand, 28467356 - 28467424
Alignment:
Q  184 tagcttatgaaaccaacttatagcttatatgaaaat--ggtgactttattttattttatgttatacaca 250  Q
    |||||||||||| |||||| ||||||||||||||||    |||||||||||||| || |||||||||||    
T  28467356 tagcttatgaaaacaacttgtagcttatatgaaaataatttgactttattttatcttttgttatacaca 28467424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 136
Target Start/End: Complemental strand, 34536309 - 34536220
Alignment:
Q  49 tgtttggattgacttatttgaa-ttatctactgacgtaaacactt-tgagactgttcgagagagcttacgaaaacaacttataacatgtc 136  Q
    |||||||| |||||||||||||  |||||| |||| ||||||||| |||||||||| ||||  ||||| ||||||| ||||| |||||||    
T  34536309 tgtttggaatgacttatttgaacgtatctattgacataaacacttgtgagactgtttgagatggcttatgaaaacagcttatgacatgtc 34536220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 12564921 - 12564957
Alignment:
Q  182 gatagcttatgaaaccaacttatagcttatatgaaaa 218  Q
    |||||||||||||| ||||||||||||||||||||||    
T  12564921 gatagcttatgaaaacaacttatagcttatatgaaaa 12564957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 25005844 - 25005880
Alignment:
Q  182 gatagcttatgaaaccaacttatagcttatatgaaaa 218  Q
    |||||||||||||| ||||||||||||||||||||||    
T  25005844 gatagcttatgaaaacaacttatagcttatatgaaaa 25005880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 25006081 - 25006117
Alignment:
Q  182 gatagcttatgaaaccaacttatagcttatatgaaaa 218  Q
    |||||||||||||| ||||||||||||||||||||||    
T  25006081 gatagcttatgaaaacaacttatagcttatatgaaaa 25006117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 4033934 - 4034017
Alignment:
Q  47 cctgtttggattgacttatttgaa-ttatctactgacgtaaacactt-tgagactgttcgagagagcttacgaaaacaacttat 128  Q
    |||||||| ||||||| ||||||| || ||||||| | ||||||||| ||||| |||| ||||||||||| ||||| |||||||    
T  4033934 cctgtttgcattgactcatttgaacttgtctactggcataaacacttgtgagattgtttgagagagcttatgaaaataacttat 4034017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 4078194 - 4078233
Alignment:
Q  180 atgatagcttatgaaaccaacttatagcttatatgaaaat 219  Q
    |||||||||||||||| |||||||||| ||||||||||||    
T  4078194 atgatagcttatgaaaacaacttatagattatatgaaaat 4078233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 5157221 - 5157142
Alignment:
Q  51 tttggattgacttatttgaa-ttatctactgacgtaaacactt-tgagactgttcgagagagcttacgaaaacaacttat 128  Q
    |||||||||||||||||||| |||||||| ||| ||||||||| ||| |||||| | |||||||||   |||||||||||    
T  5157221 tttggattgacttatttgaacttatctacggacataaacacttgtgaaactgtttgggagagcttatagaaacaacttat 5157142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 45205122 - 45205036
Alignment:
Q  151 tgttttcaacatatttgcaaaaactctgtatgatagcttatgaaaccaacttatagcttatatgaaaatgg--tgactttattttat 235  Q
    |||||||| | ||||| ||  ||||||  |||||||||||||||| |||||| ||||||||||| |||| |  ||||||||||||||    
T  45205122 tgttttcagcttatttccatgaactctacatgatagcttatgaaaacaacttctagcttatatggaaatagtttgactttattttat 45205036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 139
Target Start/End: Original strand, 4549462 - 4549552
Alignment:
Q  51 tttggattgacttatttga-attatctactgacgtaaacactt-tgagactgttcgagagagcttacgaaaacaacttataacatgtctat 139  Q
    ||||||||| ||||||||| ||||||||||| | ||| || || |||||||||| | |||||||||   ||||||||||| ||||||||||    
T  4549462 tttggattggcttatttgagattatctactggcataagcatttctgagactgtttgggagagcttatagaaacaacttatgacatgtctat 4549552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 8130461 - 8130423
Alignment:
Q  180 atgatagcttatgaaaccaacttatagcttatatgaaaa 218  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  8130461 atgatagcttatgaaaacaacttatagcttatgtgaaaa 8130423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 42556667 - 42556709
Alignment:
Q  171 aaactctgtatgatagcttatgaaaccaacttatagcttatat 213  Q
    |||||||  |||||||||||||||| |||||||||||||||||    
T  42556667 aaactctccatgatagcttatgaaaacaacttatagcttatat 42556709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 3052618 - 3052671
Alignment:
Q  48 ctgtttggattgacttatttgaa-ttatctactgacgtaaacactttgagactg 100  Q
    ||||||||||||  ||||||||| |||||||| ||| |||||||||||||||||    
T  3052618 ctgtttggattggtttatttgaaattatctaccgacataaacactttgagactg 3052671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 136
Target Start/End: Complemental strand, 4868550 - 4868462
Alignment:
Q  49 tgtttggattgacttatttgaa-ttatctactgacgtaaacactt-tgagactgttcgagagagcttacgaaaacaacttataacatgtc 136  Q
    |||||||||||| ||||||||| ||||||| |||| ||  ||||| |||||||||| ||||||| ||| | ||||||||||| |||||||    
T  4868550 tgtttggattgatttatttgaatttatctattgacataggcacttgtgagactgtttgagagagtttatg-aaacaacttatgacatgtc 4868462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 17422983 - 17423020
Alignment:
Q  180 atgatagcttatgaaaccaacttatagcttatatgaaa 217  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  17422983 atgatagcatatgaaaacaacttatagcttatatgaaa 17423020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 23902114 - 23902151
Alignment:
Q  182 gatagcttatgaaaccaacttatagcttatatgaaaat 219  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  23902114 gatagcttttgaaaacaacttatagcttatatgaaaat 23902151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 24460318 - 24460375
Alignment:
Q  47 cctgtttggattgacttatttgaa-ttatctactgacgtaaacactt-tgagactgtt 102  Q
    |||||||||||||||||||||||| |||||||||||| | | ||||| ||||||||||    
T  24460318 cctgtttggattgacttatttgaacttatctactgacatgagcacttgtgagactgtt 24460375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 25479635 - 25479570
Alignment:
Q  151 tgttttcaacatatttgcaaaaactctgtatgatagcttatgaaaccaacttatagcttatatgaa 216  Q
    |||||||| | ||||| || || |||| || |||||||||||||| ||||||||||| ||||||||    
T  25479635 tgttttcagcttattttcataagctctctaggatagcttatgaaaacaacttatagcctatatgaa 25479570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 269
Target Start/End: Complemental strand, 42336660 - 42336596
Alignment:
Q  207 cttatatgaaaatgg--tgactttattttattttatgttatacacacagcctatacataagcact 269  Q
    ||||||||||||| |  ||||||||||||||||| ||||||| | | | ||||||||||||||||    
T  42336660 cttatatgaaaattgcttgactttattttattttttgttataaaaataacctatacataagcact 42336596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 44940364 - 44940311
Alignment:
Q  182 gatagcttatgaaaccaacttatagcttatatgaaaatggtgactttattttat 235  Q
    ||||| |||||||| ||||||||| ||||| ||||||  |||||||||||||||    
T  44940364 gatagattatgaaaacaacttataacttatttgaaaacagtgactttattttat 44940311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 7218121 - 7218157
Alignment:
Q  182 gatagcttatgaaaccaacttatagcttatatgaaaa 218  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  7218121 gataggttatgaaaacaacttatagcttatatgaaaa 7218157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 17269273 - 17269237
Alignment:
Q  182 gatagcttatgaaaccaacttatagcttatatgaaaa 218  Q
    |||||||||||||| |||||||| |||||||||||||    
T  17269273 gatagcttatgaaaacaacttattgcttatatgaaaa 17269237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 27887163 - 27887218
Alignment:
Q  180 atgatagcttatgaaaccaacttatagcttatatgaaaatgg--tgactttatttt 233  Q
    ||||||| |||||||| |||||||||||||||||| |||| |  ||||||||||||    
T  27887163 atgatagtttatgaaaacaacttatagcttatatggaaattgtttgactttatttt 27887218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 39348014 - 39348069
Alignment:
Q  182 gatagcttatgaaaccaacttatagcttatatgaaaatggt--gactttattttat 235  Q
    ||||| |||||||| ||||||||||||| ||||| ||||||  |||||||||||||    
T  39348014 gatagtttatgaaaacaacttatagcttgtatgagaatggttggactttattttat 39348069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 1772 - 1808
Alignment:
Q  183 atagcttatgaaaccaacttatagcttatatgaaaat 219  Q
    ||||||||||||||||||||||||| |||||||||||    
T  1772 atagcttatgaaaccaacttatagcgtatatgaaaat 1808  T

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Target: scaffold0549; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 3862 - 3898
Alignment:
Q  183 atagcttatgaaaccaacttatagcttatatgaaaat 219  Q
    ||||||||||||||||||||||||| |||||||||||    
T  3862 atagcttatgaaaccaacttatagcgtatatgaaaat 3898  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 136
Target Start/End: Complemental strand, 1395788 - 1395701
Alignment:
Q  51 tttggattgacttatttgaa-ttatctactgacgtaaacacttt-gagactgttcgagagagcttacgaaaacaacttataacatgtc 136  Q
    |||| ||||||||||||||  ||||||  |||||||| |||||  ||||||||| |||||||||||| |||||||||||  |||||||    
T  1395788 tttgtattgacttatttgagcttatcttatgacgtaagcacttgcgagactgtttgagagagcttacaaaaacaacttaagacatgtc 1395701  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 218
Target Start/End: Complemental strand, 41057060 - 41057025
Alignment:
Q  183 atagcttatgaaaccaacttatagcttatatgaaaa 218  Q
    ||||||||||||| ||||||||||||||||||||||    
T  41057060 atagcttatgaaaacaacttatagcttatatgaaaa 41057025  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 215
Target Start/End: Complemental strand, 43875673 - 43875638
Alignment:
Q  180 atgatagcttatgaaaccaacttatagcttatatga 215  Q
    |||||||||||||||| |||||||||||||||||||    
T  43875673 atgatagcttatgaaaacaacttatagcttatatga 43875638  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 139
Target Start/End: Complemental strand, 3758149 - 3758060
Alignment:
Q  52 ttggattgacttatttgaa-ttatctactgacgtaaacactt-tgagactgttcgagagagcttacgaaaacaacttataacatgtctat 139  Q
    ||||||||||||||||||  || |||| || | ||||||||| ||| | | |||| ||||||||||||||| |||||| |||||||||||    
T  3758149 ttggattgacttatttgagcttgtctattggcataaacacttatgaaagttttcgtgagagcttacgaaaaaaacttaaaacatgtctat 3758060  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 135
Target Start/End: Complemental strand, 21574644 - 21574553
Alignment:
Q  48 ctgtttggattgacttatttgaa-ttatctactgacgtaaacactt---tgagactgttcgagagagcttacgaaaacaacttataacatgt 135  Q
    ||||||||| ||||||||||||| |||||||||| |  || || ||   |||||||||| | ||||||||| ||||||||||||| ||||||    
T  21574644 ctgtttggaatgacttatttgaacttatctactggcaaaatcaattgtttgagactgtttgggagagcttatgaaaacaacttatgacatgt 21574553  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 267
Target Start/End: Complemental strand, 28779364 - 28779292
Alignment:
Q  197 caacttatagcttatatgaaaatgg--tgactttattttattttatgttatacacacagcctatacataagca 267  Q
    ||||||||||||||||||||||| |  ||||||||||| || | |||||||| | ||||| |||||| |||||    
T  28779364 caacttatagcttatatgaaaatagtttgactttatttcatctgatgttataaaaacagcttatacaaaagca 28779292  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 29113566 - 29113521
Alignment:
Q  94 gagactgttcgagagagcttacgaaaacaacttataacatgtctat 139  Q
    ||||||||| ||||||||||||  ||||||||||||||||| ||||    
T  29113566 gagactgtttgagagagcttacagaaacaacttataacatgcctat 29113521  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 40880913 - 40880954
Alignment:
Q  93 tgagactgttcgagagagcttacgaaaacaacttataacatg 134  Q
    |||||||||| ||||||||||| ||||||||||||| |||||    
T  40880913 tgagactgtttgagagagcttatgaaaacaacttatgacatg 40880954  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 50211886 - 50211801
Alignment:
Q  49 tgtttggattgacttatttgaa-ttatctactgacgtaaacactt-tgagactgttcgagagagcttacgaaaacaacttataaca 132  Q
    |||||||||| |||||||| |  ||||||||| || ||| ||||| | |||||||| |||||| |||| |||||||||||||||||    
T  50211886 tgtttggattaacttattttagcttatctactaacataagcacttgtaagactgtttgagagaacttatgaaaacaacttataaca 50211801  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 21872318 - 21872354
Alignment:
Q  182 gatagcttatgaaaccaacttatagcttatatgaaaa 218  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  21872318 gatagcttatgaaaacaacttatagcttatatcaaaa 21872354  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 22214706 - 22214742
Alignment:
Q  182 gatagcttatgaaaccaacttatagcttatatgaaaa 218  Q
    |||||||||||||| |||||||||| |||||||||||    
T  22214706 gatagcttatgaaaacaacttataggttatatgaaaa 22214742  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 25182952 - 25182992
Alignment:
Q  93 tgagactgttcgagagagcttacgaaaacaacttataacat 133  Q
    |||||||||| ||||||||||| ||||||||||||| ||||    
T  25182952 tgagactgtttgagagagcttatgaaaacaacttatgacat 25182992  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 33405214 - 33405250
Alignment:
Q  182 gatagcttatgaaaccaacttatagcttatatgaaaa 218  Q
    |||||||||||||| || |||||||||||||||||||    
T  33405214 gatagcttatgaaaacagcttatagcttatatgaaaa 33405250  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 36646397 - 36646465
Alignment:
Q  150 ctgttttcaacatatttgcaaaaactctgtatgatagcttatgaaaccaacttatagcttatatgaaaa 218  Q
    ||||||||| | |||||  | ||||||| || |||||||||||||| ||| ||||| ||||||||||||    
T  36646397 ctgttttcatcttatttctataaactctctaggatagcttatgaaaacaagttataacttatatgaaaa 36646465  T

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Target: scaffold0153 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 6563 - 6611
Alignment:
Q  200 cttatagcttatatgaaaatggt--gactttattttattttatgttata 246  Q
    |||||||||||||||||||| ||  ||||||||||||||||||| ||||    
T  6563 cttatagcttatatgaaaatagtttgactttattttattttatgctata 6611  T

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Target: scaffold0153; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 13583 - 13631
Alignment:
Q  200 cttatagcttatatgaaaatggt--gactttattttattttatgttata 246  Q
    |||||||||||||||||||| ||  ||||||||||||||||||| ||||    
T  13583 cttatagcttatatgaaaatagtttgactttattttattttatgctata 13631  T

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