View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19029_low_9 (Length: 302)
Name: NF19029_low_9
Description: NF19029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19029_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 33802952 - 33802658
Alignment:
| Q |
1 |
ctgatccattcactagaggtgaaacttctaatcaaggttcacaaattgatgaaaggtttagcagaagacgcactcttcctcctccttttcatccttatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33802952 |
ctgatccattcactagaggtgaaacttctaatcaaggttcacaaattgatgaaaggtttagcagaagacgcactcttcctcctccttttcatccttatca |
33802853 |
T |
|
| Q |
101 |
agacaatgtcaataacatgtcttctttacctacaacaacattttgggatcatttcatcatggatgaagatgttgatgtagaagcaggactaagtagtact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33802852 |
agacaatgtcaataacatgtcttctttacctacaacaacattttgggatcatttcatcatggatgaagatgttgatgtagaagcaggactaagtagtact |
33802753 |
T |
|
| Q |
201 |
actactctgtctgaaattaatagctctcctggtggtcctgcatcatttctatatccctctgcagcaacaagagaaacaacaagttcttcttctca |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
33802752 |
actactctgtctgaaattaatagctctcctggtggtcctgcatcatttctatatccctctgcagcaacaagagaagcaacatgttcttcttctca |
33802658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 33731573 - 33731279
Alignment:
| Q |
1 |
ctgatccattcactagaggtgaaacttctaatcaaggttcacaaattgatgaaaggtttagcagaagacgcactcttcctcctccttttcatccttatca |
100 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33731573 |
ctgatccattcactagaggggaaacttctaatcaaggttcacaaattgatgaaaggtttagcagaagacacactcttcctcctccttttcatccttatca |
33731474 |
T |
|
| Q |
101 |
agacaatgtcaataacatgtcttctttacctacaacaacattttgggatcatttcatcatggatgaagatgttgatgtagaagcaggactaagtagtact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33731473 |
agacaatgtcaataacatgtcttctttacctacaacaacattttgggatcatttcatcatggatgaagatgttgatgtagaagcaggactaagtagtact |
33731374 |
T |
|
| Q |
201 |
actactctgtctgaaattaatagctctcctggtggtcctgcatcatttctatatccctctgcagcaacaagagaaacaacaagttcttcttctca |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33731373 |
actactctgtctgaaattaatagctctcctggtggtcctgcatcatttctatatccctctgcagcaacaagagaagcaacaagttcttcttctca |
33731279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 6145562 - 6145784
Alignment:
| Q |
1 |
ctgatccattcactagaggtgaaacttctaatcaaggttcacaaattgatgaaaggtttagcagaagacgcactcttcctcctccttttcatccttatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||| | |||||||||| |||| |||||||||||||||||| | |||| |
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| T |
6145562 |
ctgatccattcactagaggtgaaacttctaatcaaggttcacaagttgacgaaagctcaagcagaagacacacttttcctcctccttttcatcttcatca |
6145661 |
T |
|
| Q |
101 |
agacaatgtcaataacatgtcttctttacctacaacaacattttgggatcatttcatcatggatgaagatgttgatgtagaagcaggactaagtagtact |
200 |
Q |
| |
|
|||||||||| ||||||||||| | || | ||||||||||||||||||| | ||| ||||||||| |||| || | ||||||| ||||||| || |
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| T |
6145662 |
agacaatgtc---aacatgtcttcatcac---aagaaacattttgggatcatttcctgatgaatgaagatgatgatataaatgcaggaccaagtagtgct |
6145755 |
T |
|
| Q |
201 |
actactctgtctgaaattaatagctctcc |
229 |
Q |
| |
|
|| | || ||| |||||||||||| |||| |
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|
| T |
6145756 |
acaaatcggtccgaaattaatagccctcc |
6145784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 6126145 - 6126368
Alignment:
| Q |
3 |
gatccattcactagaggtgaaacttctaatcaaggttcacaaattgatgaaaggtttagcagaagacgcactcttcctcctccttttcatccttatcaag |
102 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |||| ||| | | ||||||||||||||||||||||||||||||| | |||||| |
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|
| T |
6126145 |
gatccattcattagaggtgaaacttctaatcaaggttcacaagttgacagaagctcaatcagaagacgcactcttcctcctccttttcatattcatcaag |
6126244 |
T |
|
| Q |
103 |
acaatgtcaataacatgtcttctttacctacaacaacattttgggatcatttcatcatggatgaagatgttgatgtagaagcaggactaagtagtactac |
202 |
Q |
| |
|
|||||||| |||| |||||||||||| | ||||||||||||| | ||| | ||| ||||||||| |||| |||| ||||||| ||||||| |||| |
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| T |
6126245 |
acaatgtc---aacacgtcttctttaccgcaagaaacattttgggataagttcttgatgtatgaagatgctgatatagatgcaggaccaagtagtgctac |
6126341 |
T |
|
| Q |
203 |
tactctgtctgaaattaatagctctcc |
229 |
Q |
| |
|
||||| || |||||||||||| |||| |
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|
| T |
6126342 |
tactcagttcgaaattaatagccctcc |
6126368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 34283397 - 34283454
Alignment:
| Q |
238 |
ctgcatcatttctatatccctctgcagcaacaagagaaacaacaagttcttcttctca |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| | || |||||||||||||||| |
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|
| T |
34283397 |
ctgcatcatttctatatccctctgcagcaataagaggagcagcaagttcttcttctca |
34283454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 6138523 - 6138621
Alignment:
| Q |
14 |
tagaggtgaaacttctaatcaaggttcacaaattgatgaaaggtttagcagaagacgcactcttcctcctccttttcatccttatcaagacaatgtcaa |
112 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||| | | ||| |||||||||||||||||| || ||||||| || |||||||||| ||||| |
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| T |
6138523 |
tagaggtgaaacttctgctcaaggttcacagggtgatgaaggttctagtagaagacgcactcttccttctttttttcatactcatcaagacaacgtcaa |
6138621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 6151983 - 6152030
Alignment:
| Q |
2 |
tgatccattcactagaggtgaaacttctaatcaaggttcacaaattga |
49 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||| |||| |||| |
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| T |
6151983 |
tgatccattaactagaggtgaaacttctaatcaaggtttacaagttga |
6152030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 10343426 - 10343368
Alignment:
| Q |
163 |
atgaagatgttgatgtagaagcaggactaagtagtactactactctgtctgaaattaat |
221 |
Q |
| |
|
|||||| ||||||||||| ||||||| || ||||||||||||||||||| |||||||| |
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|
| T |
10343426 |
atgaagttgttgatgtaggcgcaggaccaaatagtactactactctgtctcaaattaat |
10343368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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