View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1902_high_4 (Length: 363)

Name: NF1902_high_4
Description: NF1902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1902_high_4
NF1902_high_4
[»] chr8 (1 HSPs)
chr8 (16-350)||(29157345-29157679)
[»] chr2 (8 HSPs)
chr2 (133-250)||(2583668-2583785)
chr2 (177-306)||(2596498-2596628)
chr2 (16-92)||(2581615-2581691)
chr2 (16-92)||(2596304-2596380)
chr2 (88-157)||(2596431-2596500)
chr2 (135-196)||(2584987-2585051)
chr2 (16-65)||(2589229-2589278)
chr2 (88-142)||(2581743-2581797)
[»] chr7 (1 HSPs)
chr7 (124-306)||(46769773-46769964)
[»] chr6 (1 HSPs)
chr6 (16-68)||(30399420-30399472)


Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 16 - 350
Target Start/End: Original strand, 29157345 - 29157679
Alignment:
Q  16 agaaagcacgtcaagacatttgtgggatggttggaggaaaggaagaaaggaggcttttggtgctgcaatagctttaggttttttcggggacattggaagc 115  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| |||  ||||||||||||||||||||||||||| ||||||||||||||||||    
T  29157345 agaaagcacgtcaagacatttgtgggatgattggaggaaaggaagaaatgagctttttggtgctgcaatagctttaggtttcttcggggacattggaagc 29157444  T
Q  116 aactcacaatttaataattgttttgttttataactcttctgtttgtttggaaccatgtgaatgtcactaatacatttatgcattttagtccttttcctta 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29157445 aactcacaatttaataattgttttgttttataactcttctgtttgtttggaaccatgtgaatgtcactaatacatttatgcattttagtccttttcctta 29157544  T
Q  216 ttcatttctttacatgccatctctcttctaatttttcatccaattcaaccattcaactttcagtttttccttgtttcttttatgtaattgtggtttgtgt 315  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  29157545 ttcatttctttacatgccatctctcttttaatttttcatccaattcaaccattcaactttcagtttttccttgtttcttttatgtaattgtggtttgttt 29157644  T
Q  316 catgtcatgggtatatgtctatggaaagcctattc 350  Q
    |||||||||||||||||||||||||||||||||||    
T  29157645 catgtcatgggtatatgtctatggaaagcctattc 29157679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 133 - 250
Target Start/End: Original strand, 2583668 - 2583785
Alignment:
Q  133 ttgttttgttttataactcttctgtttgtttggaaccatgtgaatgtcactaatacatttatgcattttagtccttttccttattcatttctttacatgc 232  Q
    |||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2583668 ttgttttgttttgtaactcttctctttgtttggaaacatgtgaatgtcactaatacatttatgcattttagtccttttccttattcatttatttacatgc 2583767  T
Q  233 catctctcttctaatttt 250  Q
    |||||||||| |||||||    
T  2583768 catctctcttttaatttt 2583785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 177 - 306
Target Start/End: Original strand, 2596498 - 2596628
Alignment:
Q  177 tgtcactaatacatttatgcattttagtccttttccttattcatttctttacatgccatctctcttctaatttttcatccaattcaaccattcaactttc 276  Q
    |||||||||||||||||||| ||| | ||||||||||| ||||||| ||||||| | ||||||||| |||||||||||||||||||||||||| ||||||    
T  2596498 tgtcactaatacatttatgcctttaaatccttttccttgttcatttttttacattctatctctcttttaatttttcatccaattcaaccattcgactttc 2596597  T
Q  277 agtttttccttgtttctttt-atgtaattgt 306  Q
    ||||||||| |||||||||| ||||||||||    
T  2596598 agtttttccatgtttcttttaatgtaattgt 2596628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 2581615 - 2581691
Alignment:
Q  16 agaaagcacgtcaagacatttgtgggatggttggaggaaaggaagaaaggaggcttttggtgctgcaatagctttag 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||    
T  2581615 agaaagcacgtcaagacatttgtgggatggttggaggaaaggaagaaaggagctttttggtgctacaatagctttag 2581691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 2596304 - 2596380
Alignment:
Q  16 agaaagcacgtcaagacatttgtgggatggttggaggaaaggaagaaaggaggcttttggtgctgcaatagctttag 92  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||| ||||||||||||    
T  2596304 agaaagcacgtcaagacatttatgggatggttggaggaaaggaagaaaggagctttttggtgctacaatagctttag 2596380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 157
Target Start/End: Original strand, 2596431 - 2596500
Alignment:
Q  88 tttaggttttttcggggacattggaagcaactcacaatttaataattgttttgttttataactcttctgt 157  Q
    ||||||||| ||||  |||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  2596431 tttaggtttcttcgaagacatttgaagcaactcacaatgtaataattgttttgttttataactcttctgt 2596500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 2584987 - 2585051
Alignment:
Q  135 gttttgttttataactctt---ctgtttgtttggaaccatgtgaatgtcactaatacatttatgc 196  Q
    |||||||||||||||||||   |||||||||||||| ||||| |||||||||||| |||||||||    
T  2584987 gttttgttttataactcttcttctgtttgtttggaaacatgtaaatgtcactaattcatttatgc 2585051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 2589229 - 2589278
Alignment:
Q  16 agaaagcacgtcaagacatttgtgggatggttggaggaaaggaagaaagg 65  Q
    |||||||||||||||||||||||||||||||| |||||||  ||||||||    
T  2589229 agaaagcacgtcaagacatttgtgggatggttagaggaaaaaaagaaagg 2589278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 142
Target Start/End: Original strand, 2581743 - 2581797
Alignment:
Q  88 tttaggttttttcggggacattggaagcaactcacaatttaataattgttttgtt 142  Q
    ||||||||| ||||  |||||| |||||||||||||||||||||||| |||||||    
T  2581743 tttaggtttcttcgaagacatttgaagcaactcacaatttaataatttttttgtt 2581797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 124 - 306
Target Start/End: Original strand, 46769773 - 46769964
Alignment:
Q  124 atttaataattgttttgttttataactctt---ctgtttgtttggaaccatgtgaatgtcactaatacatttatgcattttagtccttttccttattcat 220  Q
    ||||||||||| ||||||||||||||||||   |||||||||||||| |||||| ||||||||| ||||||||||| ||||||||| | |||||||||||    
T  46769773 atttaataattattttgttttataactcttcttctgtttgtttggaagcatgtggatgtcactagtacatttatgccttttagtccatatccttattcat 46769872  T
Q  221 ttctttacatgccatctctct-----tctaatttttcatccaattcaaccattcaac-tttcagtttttccttgtttcttttatgtaattgt 306  Q
    ||||||| ||| ||||||| |     | ||||||| |||||||||||| |||||||| ||||||||||||||| ||||||  ||||||||||    
T  46769873 ttctttatatgtcatctctattttaatttaattttacatccaattcaatcattcaacttttcagtttttccttctttcttcaatgtaattgt 46769964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 30399420 - 30399472
Alignment:
Q  16 agaaagcacgtcaagacatttgtgggatggttggaggaaaggaagaaaggagg 68  Q
    |||||||||||||||||||||||| | ||||| || ||||||||||| |||||    
T  30399420 agaaagcacgtcaagacatttgtgcgctggttagatgaaaggaagaatggagg 30399472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University