View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1902_low_14 (Length: 276)
Name: NF1902_low_14
Description: NF1902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1902_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 14 - 261
Target Start/End: Original strand, 45641163 - 45641410
Alignment:
| Q |
14 |
gaagtcgtttgtggtcttatgttgtatagatagctctggctgcttggaataatcaaagggttttcaatgggaattcccgaggattggcttgaagtgttac |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45641163 |
gaagtcgtttgtggtcttatgttgtatagatagctctggctgcttggaataatcaaagggttttcaaggggaattcccgaggattggcttgaagtgttac |
45641262 |
T |
|
| Q |
114 |
tggattgagatttgagatgacacgagagagggcgcaagagtctgaaattcctgataatccttaaacgattgatgatgtatgaaaagcattgaagtatgca |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45641263 |
tggattgagatttgagatgacacgagagagggcgcaagagtctgaaattcctgataatccttaaacggttgatgatgtatgaaaagcattgaagtatgca |
45641362 |
T |
|
| Q |
214 |
cttcctaataatgtgtcacaacggcgtttgcatactagctattgttct |
261 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45641363 |
cttcctactaatgtgtcacaacggcgtttgcatactagctattgttct |
45641410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 222
Target Start/End: Original strand, 45647643 - 45647837
Alignment:
| Q |
23 |
tgtggtcttatgttgtatagatagctctggctgcttggaataatcaaagggttttcaatgggaattcccgaggattggcttgaagtgttactggattgag |
122 |
Q |
| |
|
|||| ||||||| |||| | || ||| |||||||||||||||| ||||||||| |||| ||||||| ||||||| ||||||||||||||| ||||||||| |
|
|
| T |
45647643 |
tgtgatcttatgctgtagacatggctatggctgcttggaataaccaaagggttatcaaagggaatttccgaggactggcttgaagtgttattggattgag |
45647742 |
T |
|
| Q |
123 |
atttgagatgacacgagagagggcgcaagagtctgaaattcctgataatccttaaacgattgatgatgtatgaaaagcattgaagtatgcacttcctaat |
222 |
Q |
| |
|
|| || | ||||||| || |||||||||||||||||||||||||||| || | ||| || ||||||||| ||||||||| | || |||||||| |
|
|
| T |
45647743 |
atgacag-----aagagagagagcacaagagtctgaaattcctgataatccttgaatgcttggtgcggtatgaaaaacattgaagtcttcatttcctaat |
45647837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University