View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1902_low_18 (Length: 239)

Name: NF1902_low_18
Description: NF1902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1902_low_18
NF1902_low_18
[»] chr4 (11 HSPs)
chr4 (75-239)||(42468636-42468801)
chr4 (75-239)||(42470965-42471130)
chr4 (78-239)||(45162004-45162166)
chr4 (78-239)||(45166896-45167058)
chr4 (101-239)||(50855958-50856097)
chr4 (75-130)||(45161971-45162026)
chr4 (75-130)||(45166863-45166918)
chr4 (179-239)||(19429274-19429334)
chr4 (101-239)||(8739240-8739380)
chr4 (189-239)||(43179576-43179626)
chr4 (75-105)||(50856063-50856093)
[»] chr8 (9 HSPs)
chr8 (75-239)||(4876814-4876979)
chr8 (75-239)||(4879142-4879307)
chr8 (72-239)||(24519351-24519519)
chr8 (82-239)||(36377379-36377537)
chr8 (82-239)||(36379664-36379822)
chr8 (81-239)||(21268327-21268485)
chr8 (74-147)||(21268478-21268552)
chr8 (101-147)||(36379816-36379863)
chr8 (101-147)||(36377531-36377578)
[»] chr7 (20 HSPs)
chr7 (75-239)||(3932537-3932702)
chr7 (75-239)||(3934776-3934941)
chr7 (75-239)||(8733694-8733856)
chr7 (111-239)||(19788927-19789056)
chr7 (111-239)||(19786621-19786750)
chr7 (81-239)||(36464420-36464579)
chr7 (81-239)||(8414688-8414846)
chr7 (142-239)||(3052094-3052191)
chr7 (75-150)||(3932507-3932583)
chr7 (75-150)||(3934746-3934822)
chr7 (75-236)||(42678770-42678940)
chr7 (75-130)||(16497175-16497230)
chr7 (75-123)||(16497152-16497200)
chr7 (75-166)||(16535260-16535352)
chr7 (75-166)||(16630310-16630402)
chr7 (75-130)||(16535327-16535382)
chr7 (75-130)||(16630280-16630335)
chr7 (75-166)||(16497078-16497170)
chr7 (101-147)||(8414839-8414886)
chr7 (108-147)||(3051995-3052035)
[»] chr1 (8 HSPs)
chr1 (81-239)||(29833272-29833431)
chr1 (81-239)||(2404024-2404183)
chr1 (82-239)||(734775-734933)
chr1 (101-147)||(734927-734974)
chr1 (175-238)||(18353733-18353796)
chr1 (75-236)||(8933749-8933919)
chr1 (101-147)||(29833424-29833471)
chr1 (80-125)||(419221-419266)
[»] chr5 (12 HSPs)
chr5 (82-239)||(37207701-37207859)
chr5 (82-239)||(23164437-23164595)
chr5 (82-239)||(11850104-11850262)
chr5 (82-239)||(22600741-22600899)
chr5 (91-239)||(11852362-11852511)
chr5 (75-147)||(37207634-37207707)
chr5 (189-239)||(37215400-37215450)
chr5 (101-147)||(23164589-23164636)
chr5 (73-236)||(1779417-1779589)
chr5 (101-147)||(11850256-11850303)
chr5 (101-147)||(11852514-11852561)
chr5 (101-147)||(22600700-22600747)
[»] chr2 (7 HSPs)
chr2 (82-239)||(31486712-31486870)
chr2 (82-239)||(31488996-31489154)
chr2 (101-147)||(31486671-31486718)
chr2 (101-147)||(31488955-31489002)
chr2 (176-239)||(34576797-34576860)
chr2 (189-236)||(23859931-23859978)
chr2 (75-130)||(34576920-34576975)
[»] scaffold0008 (1 HSPs)
scaffold0008 (75-130)||(73069-73124)
[»] chr3 (3 HSPs)
chr3 (20-72)||(42431530-42431582)
chr3 (173-239)||(18966308-18966374)
chr3 (177-234)||(1701104-1701161)
[»] scaffold0050 (2 HSPs)
scaffold0050 (173-239)||(29261-29327)
scaffold0050 (173-226)||(31574-31627)
[»] chr6 (2 HSPs)
chr6 (101-166)||(21199137-21199203)
chr6 (75-105)||(21199141-21199171)
[»] scaffold0312 (1 HSPs)
scaffold0312 (80-125)||(11305-11350)


Alignment Details
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 75 - 239
Target Start/End: Complemental strand, 42468801 - 42468636
Alignment:
Q  75 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagacactactagat 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| | ||| ||||||| ||||||| ||    
T  42468801 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactctagaatactggggaataataaggaagctactagatactactaaat 42468702  T
Q  174 aagcactagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42468701 aagcactagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctc 42468636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 75 - 239
Target Start/End: Complemental strand, 42471130 - 42470965
Alignment:
Q  75 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagacactactagat 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| | ||| ||||||| ||||||| ||    
T  42471130 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactctagaatacttgggaataataaggaagctactagatactactaaat 42471031  T
Q  174 aagcactagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42471030 aagcactagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctc 42470965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 78 - 239
Target Start/End: Original strand, 45162004 - 45162166
Alignment:
Q  78 tgaagaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagacactactagataag 176  Q
    |||||||||||||||||||||||||||   | ||||||||||| |||| || | |||||||||||||||||| ||||| ||||||||||||||| |||||    
T  45162004 tgaagaataatatggaagtctctagaagactaaagaataatatagaagtctttagaatactagggaataataagaaagctactagacactactaaataag 45162103  T
Q  177 cactagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    ||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||| ||||    
T  45162104 cactagggaagtctttacttttctagatccttctaggtttatgtactagagtatccatatctc 45162166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 78 - 239
Target Start/End: Original strand, 45166896 - 45167058
Alignment:
Q  78 tgaagaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagacactactagataag 176  Q
    |||||||||||||||||||||||||||   | ||||||||||| |||| || | |||||||||||||||||| | ||| ||||||||||||||| |||||    
T  45166896 tgaagaataatatggaagtctctagaagactaaagaataatatagaagtctttagaatactagggaataataaggaagctactagacactactaaataag 45166995  T
Q  177 cactagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    ||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||| ||||    
T  45166996 cactagggaagtctttacttttctagatccttctaggtttatgtactagagtatccatatctc 45167058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 101 - 239
Target Start/End: Complemental strand, 50856097 - 50855958
Alignment:
Q  101 agaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagacactactagataagcactagggaagacttaacttttc 199  Q
    |||||| |||||||||||||||||| |||| |||||||| ||||||||| | ||| ||||||||||||||| |||||||||||||||| |||||||||||    
T  50856097 agaatgatgaagaataatatggaagtctctagaatactatggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttc 50855998  T
Q  200 tagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    ||||||||||||||||||||||| ||||||||||| ||||    
T  50855997 tagatccttctaggcttatgtaccagagtatccatatctc 50855958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 45161971 - 45162026
Alignment:
Q  75 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactct 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45161971 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagtctct 45162026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 45166863 - 45166918
Alignment:
Q  75 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactct 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45166863 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagtctct 45166918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 19429334 - 19429274
Alignment:
Q  179 ctagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    ||||||||| ||| ||||||||||||||||||||  |||||||||||||||| ||| ||||    
T  19429334 ctagggaagtcttgacttttctagatccttctagttttatgtactagagtattcatatctc 19429274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 8739240 - 8739380
Alignment:
Q  101 agaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagacactactaga--taagcactagggaagacttaacttt 197  Q
    |||||| ||||||||||| |||| | |||| ||||||||  |||||||| | ||| ||||| |||| |||| |  || |||||||||||  |||||  ||    
T  8739240 agaatgatgaagaataatgtggatgtctctagaatactaatgaataataaggaagctactatacac-actaaaattatgcactagggaaatcttaatgtt 8739338  T
Q  198 tctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    ||||||||||||||| | |||| ||||||| |||||| ||||    
T  8739339 tctagatccttctagtcatatgaactagagcatccatatctc 8739380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 43179576 - 43179626
Alignment:
Q  189 cttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    |||||||||| | ||||||||||| | |||| |||||||||||||||||||    
T  43179576 cttaacttttttggatccttctagtcatatgaactagagtatccatgtctc 43179626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 105
Target Start/End: Complemental strand, 50856093 - 50856063
Alignment:
Q  75 tgatgaagaataatatggaagtctctagaat 105  Q
    |||||||||||||||||||||||||||||||    
T  50856093 tgatgaagaataatatggaagtctctagaat 50856063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 75 - 239
Target Start/End: Original strand, 4876814 - 4876979
Alignment:
Q  75 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagacactactagat 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| | ||| ||||||| ||||||| ||    
T  4876814 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactctagaatactggggaataataaggaagctactagaaactactaaat 4876913  T
Q  174 aagcactagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  4876914 aagcactagggaagtcttaacttttctagatccttctaggcttatgtactatagtatccatatctc 4876979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 75 - 239
Target Start/End: Original strand, 4879142 - 4879307
Alignment:
Q  75 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagacactactagat 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| | ||| ||||||| ||||||| ||    
T  4879142 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactctagaatactggggaataataaggaagctactagaaactactaaat 4879241  T
Q  174 aagcactagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  4879242 aagcactagggaagtcttaacttttctagatccttctaggcttatgtactatagtatccatatctc 4879307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 72 - 239
Target Start/End: Complemental strand, 24519519 - 24519351
Alignment:
Q  72 acctgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagacactacta 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| | ||| ||| ||| |||||||    
T  24519519 acctgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactctagaatactggggaataataaggaagctaccagatactacta 24519420  T
Q  171 gataagcactagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
     |||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||| ||||    
T  24519419 aataagcactagggaagtcttaacttttctagatccttctaggcttatgtacaaaagtatccatatctc 24519351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 82 - 239
Target Start/End: Complemental strand, 36377537 - 36377379
Alignment:
Q  82 gaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagacactactagataagcact 180  Q
    ||||||| |||||||||||||||   | ||||||||||| |||| |||| |||||||||||||||||| | ||| ||||||||||||||| |||||||||    
T  36377537 gaataatgtggaagtctctagaagactaaagaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcact 36377438  T
Q  181 agggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36377437 agggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctc 36377379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 82 - 239
Target Start/End: Complemental strand, 36379822 - 36379664
Alignment:
Q  82 gaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagacactactagataagcact 180  Q
    ||||||| |||||||||||||||   | ||||||||||| |||| |||| |||||||||||||||||| | ||| ||||||||||||||| |||||||||    
T  36379822 gaataatgtggaagtctctagaagactaaagaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcact 36379723  T
Q  181 agggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36379722 agggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctc 36379664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 81 - 239
Target Start/End: Complemental strand, 21268485 - 21268327
Alignment:
Q  81 agaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagacactactagataagcac 179  Q
    |||||||| |||||||||||||||   | ||||||||||| |||| |||| |||||||||||||||||| | ||| ||||||||||||||| ||||  ||    
T  21268485 agaataatgtggaagtctctagaacactaaagaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataaa-ac 21268387  T
Q  180 tagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    |||||||| ||| ||||||||||||||||||||  |||||||||| ||||||||| ||||    
T  21268386 tagggaagtcttgacttttctagatccttctagttttatgtactaaagtatccatatctc 21268327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 21268552 - 21268478
Alignment:
Q  74 ctgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataat 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  21268552 ctgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactctagaatactagagaataat 21268478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 36379863 - 36379816
Alignment:
Q  101 agaatggtgaagaataatatggaagactct-gaatactagggaataat 147  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  36379863 agaatggtgaagaataatatggaagactctagaatactagggaataat 36379816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 36377578 - 36377531
Alignment:
Q  101 agaatggtgaagaataatatggaagactct-gaatactagggaataat 147  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||    
T  36377578 agaatggtgaagaataatatggaagactctagaatactaaggaataat 36377531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 6e-58; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 75 - 239
Target Start/End: Original strand, 3932537 - 3932702
Alignment:
Q  75 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagacactactagat 173  Q
    ||||||||||||||||||||||||||||||   | ||||||||||||||||||||| |||||||||||||||||| | ||| ||||||| ||||||| ||    
T  3932537 tgatgaagaataatatggaagtctctagaagactaaagaataatatggaagactctagaatactagggaataataaggaagctactagatactactaaat 3932636  T
Q  174 aagcactagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3932637 aagcactagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctc 3932702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 75 - 239
Target Start/End: Original strand, 3934776 - 3934941
Alignment:
Q  75 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagacactactagat 173  Q
    ||||||||||||||||||||||||||||||   | ||||||||||||||||||||| |||||||||||||||||| | ||| ||||||| ||||||| ||    
T  3934776 tgatgaagaataatatggaagtctctagaagactaaagaataatatggaagactctagaatactagggaataataaggaagctactagatactactaaat 3934875  T
Q  174 aagcactagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3934876 aagcactagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctc 3934941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 75 - 239
Target Start/End: Complemental strand, 8733856 - 8733694
Alignment:
Q  75 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagacactactagat 173  Q
    ||||||||||||||||||||||||||||||   | ||||||||||| |||| |||| |||||||||||||||||| | ||| ||||||||||||||| ||    
T  8733856 tgatgaagaataatatggaagtctctagaacactaaagaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaat 8733757  T
Q  174 aagcactagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    |||||||||||    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8733756 aagcactagggt---cttaacttttctagatccttctaggcttatgtactagagtatccatatctc 8733694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 111 - 239
Target Start/End: Original strand, 19788927 - 19789056
Alignment:
Q  111 agaataatatggaagactct-gaatactagggaataatatgaaagttactagacactactagataagcactagggaagacttaacttttctagatccttc 209  Q
    |||||||| |||||| |||| |||||||||||||||||| | ||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  19788927 agaataatgtggaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttc 19789026  T
Q  210 taggcttatgtactagagtatccatgtctc 239  Q
    ||||||||||||||||||||||||| ||||    
T  19789027 taggcttatgtactagagtatccatatctc 19789056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 111 - 239
Target Start/End: Original strand, 19786621 - 19786750
Alignment:
Q  111 agaataatatggaagactct-gaatactagggaataatatgaaagttactagacactactagataagcactagggaagacttaacttttctagatccttc 209  Q
    |||||||| |||||| |||| ||||| |||||||||||| | ||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  19786621 agaataatgtggaagtctctagaatattagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttc 19786720  T
Q  210 taggcttatgtactagagtatccatgtctc 239  Q
    ||||||||||||||||||||||||| ||||    
T  19786721 taggcttatgtactagagtatccatatctc 19786750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 81 - 239
Target Start/End: Complemental strand, 36464579 - 36464420
Alignment:
Q  81 agaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagacactactagataagcac 179  Q
    |||||||| |||||||||||||||   | || |||||||| |||| |||| |||||||||||||||||| | ||| ||||||||||||||| ||||||||    
T  36464579 agaataatgtggaagtctctagaacactaaataataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcac 36464480  T
Q  180 tagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    |||||||| ||| ||||||||||||||||||||  |||||||||||||||||||| ||||    
T  36464479 tagggaagtcttgacttttctagatccttctagttttatgtactagagtatccatatctc 36464420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 239
Target Start/End: Complemental strand, 8414846 - 8414688
Alignment:
Q  81 agaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagacactactagataagcac 179  Q
    |||||||| ||||||| |||||||   | ||||||||||| |||| |||| |||||||||||||||||| | ||  ||||||||||||||| ||||||||    
T  8414846 agaataatgtggaagtatctagaacactaaagaataatatagaagtctctagaatactagggaataataaggaaactactagacactactaaataagcac 8414747  T
Q  180 tagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    |||||||| ||| |||||||||||| |||||||  |||| ||||| | ||||||| ||||    
T  8414746 tagggaagtcttgacttttctagat-cttctagttttatatactaaaatatccatatctc 8414688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 239
Target Start/End: Original strand, 3052094 - 3052191
Alignment:
Q  142 aataatatgaaagttactagacactactagataagcactagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    ||||||| | ||| ||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||  |||||||||||| ||||||| ||||    
T  3052094 aataataaggaagctactagacactactaaataagcattagggaagtcttaacttttctagatccttctagttttatgtactagaatatccatatctc 3052191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 150
Target Start/End: Original strand, 3932507 - 3932583
Alignment:
Q  75 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataatatg 150  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||| ||||  ||||||||||    
T  3932507 tgatgaagaataatatggaagtctctagaatgatgaagaataatatggaagtctctagaagactaaagaataatatg 3932583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 150
Target Start/End: Original strand, 3934746 - 3934822
Alignment:
Q  75 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataatatg 150  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||| ||||  ||||||||||    
T  3934746 tgatgaagaataatatggaagtctctagaatgatgaagaataatatggaagtctctagaagactaaagaataatatg 3934822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 236
Target Start/End: Complemental strand, 42678940 - 42678770
Alignment:
Q  75 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagaca--ctactag 171  Q
    |||||||||||||||||||||| |||||||   | |||||||||||||||| ||||  ||||||| ||||||||| | ||| |||||||||  ||||||     
T  42678940 tgatgaagaataatatggaagtttctagaaaactaaagaataatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaa 42678841  T
Q  172 at------aagcactagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgt 236  Q
    ||      |||||||||| ||  |||||  ||||||||||||||||| | ||||  |||||||||||||||    
T  42678840 ataaaataaagcactaggaaaatcttaatgtttctagatccttctagtcatatgacctagagtatccatgt 42678770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 16497230 - 16497175
Alignment:
Q  75 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactct 130  Q
    |||| ||||||||||||||||||||||||||| | |||||||||||||||| ||||    
T  16497230 tgatcaagaataatatggaagtctctagaatgatcaagaataatatggaagtctct 16497175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 16497200 - 16497152
Alignment:
Q  75 tgatgaagaataatatggaagtctctagaatggtgaagaataatatgga 123  Q
    |||| ||||||||||||||||||||||||||| | ||||||||||||||    
T  16497200 tgatcaagaataatatggaagtctctagaatgatcaagaataatatgga 16497152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 16535352 - 16535260
Alignment:
Q  75 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagacact 166  Q
    |||| |||||||||||||||| |||||||||  | ||||||||| |||||| |||| |||||||| |||||||||   ||| |||||||||||    
T  16535352 tgatcaagaataatatggaagcctctagaataataaagaataatgtggaagtctctagaatactatggaataataaagaagctactagacact 16535260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 166
Target Start/End: Original strand, 16630310 - 16630402
Alignment:
Q  75 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagacact 166  Q
    |||| |||||||||||||||| |||||||||  | ||||||||| |||||| |||| |||||||| |||||||||   ||| |||||||||||    
T  16630310 tgatcaagaataatatggaagcctctagaataataaagaataatgtggaagtctctagaatactatggaataataaagaagctactagacact 16630402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 16535382 - 16535327
Alignment:
Q  75 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactct 130  Q
    |||| ||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  16535382 tgatcaagaataatatggaagtctatagaatgatcaagaataatatggaagcctct 16535327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 16630280 - 16630335
Alignment:
Q  75 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactct 130  Q
    |||| ||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  16630280 tgatcaagaataatatggaagtctatagaatgatcaagaataatatggaagcctct 16630335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 16497170 - 16497078
Alignment:
Q  75 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagacact 166  Q
    |||| |||||||||||||| | |||||||||  | ||||||||| ||||||  ||| |||||||| ||||||||| | ||| |||||||||||    
T  16497170 tgatcaagaataatatggatgcctctagaataataaagaataatgtggaagtttctagaatactatggaataataaggaagctactagacact 16497078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 8414886 - 8414839
Alignment:
Q  101 agaatggtgaagaataatatggaagactct-gaatactagggaataat 147  Q
    |||||| ||||||||||||||||||||||| ||||||||| |||||||    
T  8414886 agaatgatgaagaataatatggaagactctagaatactagagaataat 8414839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 3051995 - 3052035
Alignment:
Q  108 tgaagaataatatggaagactct-gaatactagggaataat 147  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  3051995 tgaagaataatatggaagactctagaatactagagaataat 3052035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 81 - 239
Target Start/End: Complemental strand, 29833431 - 29833272
Alignment:
Q  81 agaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagacactactagataagcac 179  Q
    |||||||| |||||||||||||||   | ||||||||||| |||| |||| |||||||||||||||||| | ||| ||||||||||||||| ||||||||    
T  29833431 agaataatgtggaagtctctagaacactaaagaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcac 29833332  T
Q  180 tagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29833331 tagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 29833272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 81 - 239
Target Start/End: Complemental strand, 2404183 - 2404024
Alignment:
Q  81 agaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagacactactagataagcac 179  Q
    |||||||| ||||| |||||||||   | ||||||||||| |||| |||| |||||||||||||||||| | ||| ||||||| ||||||| ||||||||    
T  2404183 agaataatgtggaaatctctagaagactaaagaataatatagaagtctctagaatactagggaataataaggaagctactagatactactaaataagcac 2404084  T
Q  180 tagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2404083 tagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctc 2404024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 82 - 239
Target Start/End: Complemental strand, 734933 - 734775
Alignment:
Q  82 gaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagacactactagataagcact 180  Q
    ||||||| ||||||||| |||||   | ||||||||||| |||| |||| |||||||||||||||| | | ||| ||||||||||||||| |||||||||    
T  734933 gaataatgtggaagtctttagaagactaaagaataatatagaagtctctagaatactagggaataacaaggaagctactagacactactaaataagcact 734834  T
Q  181 agggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  734833 agggaagtcttaacttttctagatccttctaggtttatgtactagagtatccatatctc 734775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 734974 - 734927
Alignment:
Q  101 agaatggtgaagaataatatggaagactct-gaatactagggaataat 147  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||    
T  734974 agaatgatgaagaataatatggaagactctagaatactagggaataat 734927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 18353733 - 18353796
Alignment:
Q  175 agcactagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtct 238  Q
    ||||||||| ||  |||| ||||||||||||||||||| | |||| ||||||||||||||||||    
T  18353733 agcactaggaaaatcttatcttttctagatccttctagtcatatgaactagagtatccatgtct 18353796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 236
Target Start/End: Complemental strand, 8933919 - 8933749
Alignment:
Q  75 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactctgaa-tactagggaataatatgaaagttactagacact--actag 171  Q
    |||||||||||||||||||| | |||| ||   | ||||| |||||||||| |||| || ||||| ||||||||| | ||| || ||||||||  ||||     
T  8933919 tgatgaagaataatatggaaatttctaaaaaactaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctattagacactctactaa 8933820  T
Q  172 ataa------gcactagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgt 236  Q
    ||||      |||||||| ||  |||||  ||||||||||||||||| | |||| ||||||||||||||||    
T  8933819 ataaaataaagcactaggaaaatcttaatgtttctagatccttctagtcatatgaactagagtatccatgt 8933749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 29833471 - 29833424
Alignment:
Q  101 agaatggtgaagaataatatggaagactct-gaatactagggaataat 147  Q
    |||||| ||||||||||||||||||||||| ||||||||| |||||||    
T  29833471 agaatgatgaagaataatatggaagactctagaatactagagaataat 29833424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 419266 - 419221
Alignment:
Q  80 aagaataatatggaagtctctagaatggtgaagaataatatggaag 125  Q
    |||||||||||||||||||||| |||| | |||||||||| |||||    
T  419266 aagaataatatggaagtctctataatgttaaagaataataaggaag 419221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 82 - 239
Target Start/End: Original strand, 37207701 - 37207859
Alignment:
Q  82 gaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagacactactagataagcact 180  Q
    ||||||| |||||||||||||||   | ||||||||||| |||| || | |||||||||||||||||| | ||| ||||||||||||||| |||||||||    
T  37207701 gaataatgtggaagtctctagaagactaaagaataatatagaagtctgtagaatactagggaataataaggaagctactagacactactaaataagcact 37207800  T
Q  181 agggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37207801 agggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 37207859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 82 - 239
Target Start/End: Complemental strand, 23164595 - 23164437
Alignment:
Q  82 gaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagacactactagataagcact 180  Q
    ||||||| |||||||||||||||   | ||||||||||| |||| |||| |||||||||||||||||| | ||| ||||||||||||||| |||| ||||    
T  23164595 gaataatgtggaagtctctagaagactaaagaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataaacact 23164496  T
Q  181 agggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23164495 agggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctc 23164437  T

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Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 82 - 239
Target Start/End: Complemental strand, 11850262 - 11850104
Alignment:
Q  82 gaataatatggaagtctctagaatggtgaagaataatatggaagactctgaa-tactagggaataatatgaaagttactagacactactagataagcact 180  Q
    ||||||| |||||||||||||||   | ||||||||||| |||| |||| || ||||||||||||||| ||||| ||||||||||||||| |||||||||    
T  11850262 gaataatgtggaagtctctagaagactaaagaataatatagaagtctctaaaatactagggaataataagaaagctactagacactactaaataagcact 11850163  T
Q  181 agggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    ||||||| ||||| |||||||||||||||||||||||||||| ||||||||||| ||||    
T  11850162 agggaagtcttaaattttctagatccttctaggcttatgtacaagagtatccatatctc 11850104  T

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Target: chr5; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 82 - 239
Target Start/End: Original strand, 22600741 - 22600899
Alignment:
Q  82 gaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagacactactagataagcact 180  Q
    ||||||| |||||||||||||||   | || |||||||| |||| |||| |||||||| ||||||||| ||||| |||| |||||||||| |||||||||    
T  22600741 gaataatgtggaagtctctagaagactaaataataatatagaagtctctagaatactatggaataataagaaagctacttgacactactaaataagcact 22600840  T
Q  181 agggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22600841 agggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctc 22600899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 91 - 239
Target Start/End: Complemental strand, 11852511 - 11852362
Alignment:
Q  91 ggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagacactactagataagcactagggaagac 189  Q
    ||||||||||||||   | ||||||||||| |||| |||| |||||||||||||||||| | ||| ||||||||||||||| |||||||||||||||| |    
T  11852511 ggaagtctctagaagactaaagaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtc 11852412  T
Q  190 ttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
     ||||||||||||  |||||||||||||||||||||||||||||| ||||    
T  11852411 ataacttttctaggaccttctaggcttatgtactagagtatccatatctc 11852362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 37207634 - 37207707
Alignment:
Q  75 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataat 147  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  37207634 tgatgaagaataatatggaagtctctagaatgatgaagaataatatggaagactctagaatactagggaataat 37207707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 37215400 - 37215450
Alignment:
Q  189 cttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37215400 cttaacttttctagatccttctaggcttatatactagagtatccatgtctc 37215450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 23164636 - 23164589
Alignment:
Q  101 agaatggtgaagaataatatggaagactct-gaatactagggaataat 147  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  23164636 agaatggtgaagaataatatggaagactctagaatactagggaataat 23164589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 236
Target Start/End: Complemental strand, 1779589 - 1779417
Alignment:
Q  73 cctgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagacact--act 169  Q
    ||||| |||||||||||||||||| |||||||   | ||||||||||| |||| ||||  ||||||| ||||||||| | ||| |||||||||||  |||    
T  1779589 cctgaggaagaataatatggaagtttctagaaaactaaagaataatatagaagtctctaaaatactatggaataataaggaagctactagacactccact 1779490  T
Q  170 agat------aagcactagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgt 236  Q
    | ||      |||||||||  ||  |||||  ||||||||||||||||| | |||| ||||||||||||||||    
T  1779489 aaataaaataaagcactagaaaaatcttaatgtttctagatccttctagtcatatgaactagagtatccatgt 1779417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 11850303 - 11850256
Alignment:
Q  101 agaatggtgaagaataatatggaagactc-tgaatactagggaataat 147  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  11850303 agaatggtgaagaataatatggaagactcttgaatactatggaataat 11850256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 11852561 - 11852514
Alignment:
Q  101 agaatggtgaagaataatatggaagactct-gaatactagggaataat 147  Q
    |||||||||||||||||||||||||||||| |||||||| | ||||||    
T  11852561 agaatggtgaagaataatatggaagactctagaatactatgaaataat 11852514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 22600700 - 22600747
Alignment:
Q  101 agaatggtgaagaataatatggaagactct-gaatactagggaataat 147  Q
    |||||| ||||||||||||||||||||||| ||||| |||||||||||    
T  22600700 agaatgatgaagaataatatggaagactctagaatattagggaataat 22600747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 82 - 239
Target Start/End: Original strand, 31486712 - 31486870
Alignment:
Q  82 gaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagacactactagataagcact 180  Q
    ||||||| |||||| ||||||||   |  |||||||||| |||| |||| |||||||||||||||||| | ||| ||||||||||||||| |||||||||    
T  31486712 gaataatgtggaagcctctagaagactagagaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcact 31486811  T
Q  181 agggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31486812 agggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctc 31486870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 82 - 239
Target Start/End: Original strand, 31488996 - 31489154
Alignment:
Q  82 gaataatatggaagtctctagaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagacactactagataagcact 180  Q
    ||||||| |||||||||||| ||   | ||||||||||| |||| |||| |||||||||||||||||| | ||| ||||||||||||||| |||||||||    
T  31488996 gaataatgtggaagtctctaaaagactaaagaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcact 31489095  T
Q  181 agggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    ||||||| |||| |||||||||||||||||| |||||||||||||||||||||| ||||    
T  31489096 agggaagtcttagcttttctagatccttctaagcttatgtactagagtatccatatctc 31489154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 31486671 - 31486718
Alignment:
Q  101 agaatggtgaagaataatatggaagactct-gaatactagggaataat 147  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  31486671 agaatggtgaagaataatatggaagactctagaatactagggaataat 31486718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 31488955 - 31489002
Alignment:
Q  101 agaatggtgaagaataatatggaagactct-gaatactagggaataat 147  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  31488955 agaatggtgaagaataatatggaagactctagaatactagggaataat 31489002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 34576860 - 34576797
Alignment:
Q  176 gcactagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    ||||||| |||  |||||||||||||||||||||||| | |||| |||||||||| ||||||||    
T  34576860 gcactagagaaatcttaacttttctagatccttctagtcatatgaactagagtattcatgtctc 34576797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 23859931 - 23859978
Alignment:
Q  189 cttaacttttctagatccttctaggcttatgtactagagtatccatgt 236  Q
    |||| ||||||||||||||||||| |||||| |||||||||| |||||    
T  23859931 cttagcttttctagatccttctagtcttatgaactagagtatgcatgt 23859978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 34576975 - 34576920
Alignment:
Q  75 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactct 130  Q
    |||||||||||||| |||||||||||||||   | |||||||||||||||| ||||    
T  34576975 tgatgaagaataatgtggaagtctctagaacactaaagaataatatggaagtctct 34576920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 73069 - 73124
Alignment:
Q  75 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactct 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  73069 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagtctct 73124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 42431582 - 42431530
Alignment:
Q  20 ttgccggagggtgatttttgctcttctgaggtggacgagtacgctgattctga 72  Q
    ||||||||||||||||||||| | | ||||||||||||||| | |||||||||    
T  42431582 ttgccggagggtgatttttgcacgtatgaggtggacgagtatgatgattctga 42431530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 18966374 - 18966308
Alignment:
Q  173 taagcactagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    ||||||||||| ||  |||||  ||||||||||||||||| | || |||||||||||||||| ||||    
T  18966374 taagcactaggaaaatcttaatgtttctagatccttctagtcatacgtactagagtatccatatctc 18966308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 1701104 - 1701161
Alignment:
Q  177 cactagggaagacttaacttttctagatccttctaggcttatgtactagagtatccat 234  Q
    ||||||||||  |||||||||||||||||||||||| | |||| | |||| |||||||    
T  1701104 cactagggaaatcttaacttttctagatccttctagtcatatgaattagattatccat 1701161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 29261 - 29327
Alignment:
Q  173 taagcactagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctc 239  Q
    ||||||||||||||  |||||  ||||||||||||||||| | |||||||||||  |||||| ||||    
T  29261 taagcactagggaaatcttaatgtttctagatccttctagtcatatgtactagaacatccatatctc 29327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 31574 - 31627
Alignment:
Q  173 taagcactagggaagacttaacttttctagatccttctaggcttatgtactaga 226  Q
    ||||||||||||||  |||||  ||||||||||||||||| | |||||||||||    
T  31574 taagcactagggaaatcttaatgtttctagatccttctagtcatatgtactaga 31627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 21199137 - 21199203
Alignment:
Q  101 agaatggtgaagaataatatggaagactct-gaatactagggaataatatgaaagttactagacact 166  Q
    |||||| |||||||||||||||||| |||| |||||||| ||||||||| | ||| ||||| |||||    
T  21199137 agaatgatgaagaataatatggaagtctctagaatactatggaataataaggaagctactatacact 21199203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 105
Target Start/End: Original strand, 21199141 - 21199171
Alignment:
Q  75 tgatgaagaataatatggaagtctctagaat 105  Q
    |||||||||||||||||||||||||||||||    
T  21199141 tgatgaagaataatatggaagtctctagaat 21199171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 11305 - 11350
Alignment:
Q  80 aagaataatatggaagtctctagaatggtgaagaataatatggaag 125  Q
    |||||||||||||||||||||| |||| | |||||||||| |||||    
T  11305 aagaataatatggaagtctctataatgttaaagaataataaggaag 11350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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