View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1902_low_20 (Length: 216)

Name: NF1902_low_20
Description: NF1902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1902_low_20
NF1902_low_20
[»] chr4 (2 HSPs)
chr4 (50-188)||(41972750-41972889)
chr4 (50-130)||(15992991-15993070)
[»] chr5 (1 HSPs)
chr5 (54-165)||(15567169-15567281)
[»] chr7 (2 HSPs)
chr7 (51-188)||(36714356-36714494)
chr7 (58-130)||(6651398-6651470)
[»] chr3 (1 HSPs)
chr3 (50-123)||(29541291-29541364)
[»] scaffold0001 (1 HSPs)
scaffold0001 (52-188)||(68220-68352)
[»] chr2 (2 HSPs)
chr2 (50-107)||(14461770-14461827)
chr2 (136-195)||(15089088-15089147)
[»] chr8 (1 HSPs)
chr8 (69-132)||(23772053-23772116)
[»] scaffold0134 (1 HSPs)
scaffold0134 (69-188)||(41527-41646)


Alignment Details
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 50 - 188
Target Start/End: Complemental strand, 41972889 - 41972750
Alignment:
Q  50 catctccgcaattgtggataatttattgacaacaagatcaaacaacctagcatatctaacatcaaaaggtacaccatctaacctgagtccttccaaaaca 149  Q
    ||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41972889 catctccgcaactctgaataatttattgacaacaagatcaaacaacctagcatatctaacatcaaaaggtacaccatctaacctgattccttccaaaaca 41972790  T
Q  150 aagtagaaacctcatc-ccccacatatctaataatattat 188  Q
    ||||| || ||||||| |||||||||||||||||||||||    
T  41972789 aagtaaaagcctcatccccccacatatctaataatattat 41972750  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 15993070 - 15992991
Alignment:
Q  50 catctccgcaattgtggataatttattgacaacaagatcaaacaacctagcatatctaacatcaaaaggtacaccatctaa 130  Q
    ||||||| ||| ||||||||||||| | ||  |||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  15993070 catctccacaactgtggataatttact-actgcaagatcaaacaacttagcatatctaacatcaaaagatacaccatctaa 15992991  T

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Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 54 - 165
Target Start/End: Complemental strand, 15567281 - 15567169
Alignment:
Q  54 tccgcaattgtggataatttattgacaacaagatcaaacaacctagcatatctaacatcaaaaggtacaccatctaacc-tgagtccttccaaaacaaag 152  Q
    ||||||| ||||||||||||||| |||| |||| ||||||||||| |||||||||||||||||| |||| ||||||||| || |||||||||||||||||    
T  15567281 tccgcaactgtggataatttattaacaaaaagagcaaacaacctaacatatctaacatcaaaagatacatcatctaaccatgggtccttccaaaacaaag 15567182  T
Q  153 tagaaacctcatc 165  Q
    ||||| |||||||    
T  15567181 tagaagcctcatc 15567169  T

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Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 51 - 188
Target Start/End: Original strand, 36714356 - 36714494
Alignment:
Q  51 atctccgcaattgtggataatttattgacaacaagatcaaacaacctagcatatctaacatcaaaaggtacaccatct-aacctgagtccttccaaaaca 149  Q
    ||||| |||| |||| |||||||||| |||||||||| ||||||||||||||||||||||||||| | ||||||| || |||  | ||| |||||||| |    
T  36714356 atctctgcaactgtgaataatttattaacaacaagataaaacaacctagcatatctaacatcaaatgttacaccaactaaacacgggtctttccaaaata 36714455  T
Q  150 aagtagaaacctcatcccccacatatctaataatattat 188  Q
    |||||||| || ||||| |||| | |||| |||||||||    
T  36714456 aagtagaagccccatcctccacctgtctagtaatattat 36714494  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 6651398 - 6651470
Alignment:
Q  58 caattgtggataatttattgacaacaagatcaaacaacctagcatatctaacatcaaaaggtacaccatctaa 130  Q
    ||||||| | ||||||||| ||| ||||||||||| ||||| |||||||||||||||||| ||||||||||||    
T  6651398 caattgtagctaatttattaacagcaagatcaaactacctaacatatctaacatcaaaagatacaccatctaa 6651470  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 29541291 - 29541364
Alignment:
Q  50 catctccgcaattgtggataatttattgacaacaagatcaaacaacctagcatatctaacatcaaaaggtacac 123  Q
    ||||||| |||  ||| |||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||    
T  29541291 catctccacaacagtgaataatttattaacagcaagatcaaacaacctagcatatctaacatcaaaagatacac 29541364  T

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Target: scaffold0001 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 188
Target Start/End: Original strand, 68220 - 68352
Alignment:
Q  52 tctccgcaattgtggataatttattgacaacaagatcaaacaacctagcatatctaacatcaaaaggtacaccatctaac-ctgagtccttccaaaacaa 150  Q
    ||||||||| ||||||||||||||| |||||||| ||| |||||     || |||||||| ||||| |||||||||||||   | | ||||||||| ||     
T  68220 tctccgcaactgtggataatttattaacaacaaggtcagacaac-----atgtctaacataaaaagatacaccatctaacaacgggcccttccaaaccat 68314  T
Q  151 agtagaaacctcatcccccacatatctaataatattat 188  Q
    ||| ||| ||||||||||||| | ||| ||||||||||    
T  68315 agtggaagcctcatcccccacctttctcataatattat 68352  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 14461827 - 14461770
Alignment:
Q  50 catctccgcaattgtggataatttattgacaacaagatcaaacaacctagcatatcta 107  Q
    ||||||| ||||||||||||||||||| |||  |||||||||||||||| ||||||||    
T  14461827 catctccacaattgtggataatttattaacaggaagatcaaacaacctatcatatcta 14461770  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 15089147 - 15089088
Alignment:
Q  136 gtccttccaaaacaaagtagaaacctcatcccccacatatctaataatattattcgacat 195  Q
    ||||||| |||||||||||||| || ||||||||||  ||||||||| ||||| ||||||    
T  15089147 gtccttctaaaacaaagtagaagccccatcccccacccatctaataacattatccgacat 15089088  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 23772116 - 23772053
Alignment:
Q  69 aatttattgacaacaagatcaaacaacctagcatatctaacatcaaaaggtacaccatctaacc 132  Q
    |||||||| ||  |||||||||||||||||| |||||||||||| |||| ||||| ||| ||||    
T  23772116 aatttattaaccgcaagatcaaacaacctagtatatctaacatctaaagatacacaatccaacc 23772053  T

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Target: scaffold0134 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 188
Target Start/End: Complemental strand, 41646 - 41527
Alignment:
Q  69 aatttattgacaacaagatcaaacaacctagcatatctaacatcaaaaggtacaccatctaacc-tgagtccttccaaaacaaagtagaaacctcatccc 167  Q
    |||||||| ||  |||||||||| ||||| |||||||||||||| |||| ||||||||| ||||  |  |||||||| || || | ||||||| ||||||    
T  41646 aatttattaaccgcaagatcaaataacct-gcatatctaacatctaaagatacaccatccaaccaaggatccttccagaataacgaagaaaccccatccc 41548  T
Q  168 ccacatatctaataatattat 188  Q
    |||| | ||||  ||||||||    
T  41547 ccacctgtctagaaatattat 41527  T

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