View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1902_low_3 (Length: 439)
Name: NF1902_low_3
Description: NF1902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1902_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 4996681 - 4997110
Alignment:
| Q |
1 |
ctctatcttcatgcatgaataagaggagcttctacttattcacgaggaaaatcactaagaagtgtgtgacgcatactaccaaacttcagcatcttcaact |
100 |
Q |
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| T |
4996681 |
ctctatcttcatgcatgaataagaggagcttctacttattcacgaggaaaatcactaagaagtgtgtgactcatactaccaaactttagcatcttcaact |
4996780 |
T |
|
| Q |
101 |
atacaaatacaaaattaacaccccttcaaaaaa-catgatcattctcatcctctcacacacactaccaaaa--attcacaacatgaaaaaactcattttc |
197 |
Q |
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||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4996781 |
atacaaatacaaa-ttaacaccccttcaaaaaaacacgatcattctcatcctctcacacacactaccaaaaaaattcacaacatgaaaaaactcattttc |
4996879 |
T |
|
| Q |
198 |
attcttctcttttcactactatgttcaaatggaaccaccttttcactctcaagagactatgaaattcttcttcatgtaaagaacacacaaattgatgaca |
297 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4996880 |
attcttctcttttcactagtatgttcaaatggaaccaccttttcactctcaagagactatgaaattcttcttcatgtaaagaacacacaaattgatgaca |
4996979 |
T |
|
| Q |
298 |
aaaacaaaagtctcaatgattggcttccaaacacagatcataatccttgtaactggagaggcataacctgcgattcgtggaataaatccgttgtatcaat |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4996980 |
aaaacaaaagtctcaatgattggcttccaaacacagatcataatccttgtaactggagaggcataacctgcgattcgcggaataaatccgttgtatcaat |
4997079 |
T |
|
| Q |
398 |
cgacctcacagaaaccggtatttatgatgat |
428 |
Q |
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|||||||||||||||||||||||||| |||| |
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| T |
4997080 |
cgacctcacagaaaccggtatttatggtgat |
4997110 |
T |
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