View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1902_low_4 (Length: 422)

Name: NF1902_low_4
Description: NF1902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1902_low_4
NF1902_low_4
[»] chr1 (1 HSPs)
chr1 (13-407)||(2732578-2732971)
[»] chr6 (2 HSPs)
chr6 (213-368)||(28738725-28738880)
chr6 (282-357)||(28738685-28738760)
[»] chr4 (1 HSPs)
chr4 (213-346)||(56061631-56061765)
[»] chr8 (5 HSPs)
chr8 (259-360)||(33102213-33102313)
chr8 (276-357)||(4568012-4568093)
chr8 (214-356)||(10228551-10228699)
chr8 (214-252)||(10228615-10228653)
chr8 (303-356)||(33102345-33102398)
[»] chr2 (5 HSPs)
chr2 (284-357)||(38909036-38909110)
chr2 (213-361)||(36944440-36944587)
chr2 (282-352)||(33629522-33629592)
chr2 (287-360)||(11758639-11758712)
chr2 (213-266)||(33629504-33629557)
[»] chr3 (1 HSPs)
chr3 (274-361)||(46221710-46221797)
[»] chr7 (1 HSPs)
chr7 (303-361)||(36946700-36946758)


Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 13 - 407
Target Start/End: Complemental strand, 2732971 - 2732578
Alignment:
Q  13 aatatcatattcaagtcataagggactctcagttggtgattaaacagattatcggggaatacaaatgcttgaatgtttgtcaatgcaattgtttaacatg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2732971 aatatcatattcaagtcataagggactctcagttggtgattaaacaaattatcggggaatacaaatgcttgaatgtttgtcaatgcaattgtttaacatg 2732872  T
Q  113 tcccgacaatccttggggtaaaaggaaacacctcttgatcttacacataagaaagacttttattgttccacttcaatttttgctnnnnnnnnngacacat 212  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| || |         ||||||     
T  2732871 tcccgacaatccttggggtacaaggaaacacctcttgatcttacacatgagaaagacttttgttgttccacttcaatttctg-ttaaaaaaaagacacag 2732773  T
Q  213 aaattacacatttaacttcaacgatagctaactaccattcaagaacaaagaaaatgaatgtagtcaaacggtagttaactactgttgaagttaaatgtgt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2732772 aaattacacatttaacttcaacgatagctaactaccattcaagaacaaagaaaatgaatgtagtcaaacggtagttaactactgttgaagttaaatgtgt 2732673  T
Q  313 aattttcatgtgttttcaaacaaaaactgaagtgggaacaacaatttttcacaagaaataccatacagaagagccaaaatcgtttgcatactttt 407  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2732672 aattttcatgtgttttcaaacaaaaactaaagtgggaacaacaatttttcacaagaaataccatacagaagagccaaaatcgtttgcatactttt 2732578  T

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Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 213 - 368
Target Start/End: Original strand, 28738725 - 28738880
Alignment:
Q  213 aaattacacatttaacttcaacgatagctaactaccattcaagaacaaagaaaatgaatgtagtcaaacggtagttaactactgttgaagttaaatgtgt 312  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||  |||||| ||| | ||||| ||||||||   ||||  ||| |||| |||||||    
T  28738725 aaattacacatttaacctcaacgatagctaactaccattcaggaactgagaaaacgaaggaagtcagacggtagtcg-ctaccattggagtttaatgtgt 28738823  T
Q  313 aattttcatgtgttttcaaacaaaaactgaagtgggaacaacaatttt-tcacaaga 368  Q
    |||||||||||||||||||  ||||||||||||||||||||| ||||| ||||||||    
T  28738824 aattttcatgtgttttcaagtaaaaactgaagtgggaacaacgattttctcacaaga 28738880  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 282 - 357
Target Start/End: Complemental strand, 28738760 - 28738685
Alignment:
Q  282 ggtagttaactactgttgaagttaaatgtgtaattttcatgtgttttcaaacaaaaactgaagtgggaacaacaat 357  Q
    |||||||| |||  ||||| ||||||||||||||||||||||||||| || | ||||||||| |||||||||||||    
T  28738760 ggtagttagctatcgttgaggttaaatgtgtaattttcatgtgtttttaagcgaaaactgaaatgggaacaacaat 28738685  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 213 - 346
Target Start/End: Complemental strand, 56061765 - 56061631
Alignment:
Q  213 aaattacacatttaacttcaacgatagctaactaccattcaagaacaaagaaaatgaatgtagtcaaacggtagttaactactgttga-agttaaatgtg 311  Q
    ||||| ||||||||||||||||||||||||| |||||||  | ||||||||||| | | | |||| || |||| |||||||| |||   || ||||||||    
T  56061765 aaatttcacatttaacttcaacgatagctaattaccatttgaaaacaaagaaaacggaggaagtcgaatggtaattaactaccgttttgagataaatgtg 56061666  T
Q  312 taattttcatgtgttttcaaacaaaaactgaagtg 346  Q
    |||||||||||||||||||| |||||||| |||||    
T  56061665 taattttcatgtgttttcaagcaaaaactaaagtg 56061631  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 259 - 360
Target Start/End: Complemental strand, 33102313 - 33102213
Alignment:
Q  259 aaagaaaatgaatgtagtcaaacggtagttaactactgttgaagttaaatgtgtaattttcatgtgttttcaaacaaaaactgaagtgggaacaacaatt 358  Q
    |||||||||||| | |||||||| ||| | | |||| ||||||||||||||||||||||| ||||||||||||||||||  || ||| | ||||||||||    
T  33102313 aaagaaaatgaaggaagtcaaacagta-tcagctaccgttgaagttaaatgtgtaatttttatgtgttttcaaacaaaatttgtagtagaaacaacaatt 33102215  T
Q  359 tt 360  Q
    ||    
T  33102214 tt 33102213  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 276 - 357
Target Start/End: Complemental strand, 4568093 - 4568012
Alignment:
Q  276 tcaaacggtagttaactactgttgaagttaaatgtgtaattttcatgtgttttcaaacaaaaactgaagtgggaacaacaat 357  Q
    ||||||||||||||||||| |||| |||||||   ||||||| || |||||||||  |||||| ||||||||||||||||||    
T  4568093 tcaaacggtagttaactaccgttggagttaaacacgtaatttccacgtgttttcatgcaaaaattgaagtgggaacaacaat 4568012  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 356
Target Start/End: Original strand, 10228551 - 10228699
Alignment:
Q  214 aattacacatttaacttcaacgatagctaactaccattcaagaacaaagaaaatgaatgtagtcaaacggtagttaactactgttgaagttaaatgtgta 313  Q
    |||||||||||||| | ||||| |||||||||||| ||  | || ||||||||||||   || | ||  ||||||| |||  ||||| ||||||||||||    
T  10228551 aattacacatttaaatccaacggtagctaactaccgtttgaaaataaagaaaatgaagaaagacgaatagtagttagctatcgttgaggttaaatgtgta 10228650  T
Q  314 atttt------catgtgttttcaaacaaaaactgaagtgggaacaacaa 356  Q
    ||| |      ||||||||||||| ||||||||||| ||| ||||||||    
T  10228651 attctaatttccatgtgttttcaagcaaaaactgaactggaaacaacaa 10228699  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 10228653 - 10228615
Alignment:
Q  214 aattacacatttaacttcaacgatagctaactaccattc 252  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  10228653 aattacacatttaacctcaacgatagctaactactattc 10228615  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 33102345 - 33102398
Alignment:
Q  303 ttaaatgtgtaattttcatgtgttttcaaacaaaaactgaagtgggaacaacaa 356  Q
    |||||| |||||| || |||||||||||| ||||| ||||||||| ||||||||    
T  33102345 ttaaatatgtaatcttgatgtgttttcaagcaaaatctgaagtggaaacaacaa 33102398  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 284 - 357
Target Start/End: Original strand, 38909036 - 38909110
Alignment:
Q  284 tagttaactactgttgaagttaaatgtgtaattttc-atgtgttttcaaacaaaaactgaagtgggaacaacaat 357  Q
    |||||| |||||||||  ||||||||| |||||||  |||||||||||||||||| |||||||||||||||||||    
T  38909036 tagttagctactgttggggttaaatgtttaattttttatgtgttttcaaacaaaatctgaagtgggaacaacaat 38909110  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 213 - 361
Target Start/End: Complemental strand, 36944587 - 36944440
Alignment:
Q  213 aaattacacatttaacttcaacgatagctaactaccattcaagaacaaagaaaatgaatgtagtcaaacggtagttaactactgttgaagttaaatgtgt 312  Q
    ||||||||| | |||||| |||| ||| ||||| || ||| |||| ||| |||| ||| | |||| | || || ||| |||||||||| ||||||| |||    
T  36944587 aaattacacgtataactttaacggtagttaactgccgttcgagaaaaaa-aaaacgaaggaagtcgagcgataattagctactgttgatgttaaatatgt 36944489  T
Q  313 aattttcatgtgttttcaaacaaaaactgaagtgggaacaacaattttt 361  Q
    ||||||||  ||||||||| |||||||||||  | ||||||||||||||    
T  36944488 aattttcacatgttttcaagcaaaaactgaaacgagaacaacaattttt 36944440  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 33629522 - 33629592
Alignment:
Q  282 ggtagttaactactgttgaagttaaatgtgtaattttcatgtgttttcaaacaaaaactgaagtgggaaca 352  Q
    |||||||| |||| ||||  |||||||||||||||| ||||||||||||| ||||| ||||| ||||||||    
T  33629522 ggtagttagctaccgttggggttaaatgtgtaatttccatgtgttttcaagcaaaatctgaaatgggaaca 33629592  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 360
Target Start/End: Original strand, 11758639 - 11758712
Alignment:
Q  287 ttaactactgttgaagttaaatgtgtaattttcatgtgttttcaaacaaaaactgaagtgggaacaacaatttt 360  Q
    |||||||||||||||||||||||||||| ||| || |||||||| | ||||  | |||||  ||||||||||||    
T  11758639 ttaactactgttgaagttaaatgtgtaaattttatatgttttcacataaaatttaaagtgtaaacaacaatttt 11758712  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 33629557 - 33629504
Alignment:
Q  213 aaattacacatttaacttcaacgatagctaactaccattcaagaacaaagaaaa 266  Q
    ||||||||||||||||  ||||| ||||||||||||||||  ||||||||||||    
T  33629557 aaattacacatttaaccccaacggtagctaactaccattcgggaacaaagaaaa 33629504  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 361
Target Start/End: Original strand, 46221710 - 46221797
Alignment:
Q  274 agtcaaacggtagttaactactgttgaagttaaatgtgtaattttcatgtgttttcaaacaaaaactgaagtgggaacaacaattttt 361  Q
    ||||||| |||||||| ||||||||   || |||||||||||||  |||||||||| | |||||| | |||||| |||||||||||||    
T  46221710 agtcaaatggtagttagctactgttatggtcaaatgtgtaatttctatgtgttttctagcaaaaattaaagtggaaacaacaattttt 46221797  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 361
Target Start/End: Complemental strand, 36946758 - 36946700
Alignment:
Q  303 ttaaatgtgtaattttcatgtgttttcaaacaaaaactgaagtgggaacaacaattttt 361  Q
    |||||||| ||||||  |||||||||| | |||||||||||||||||||| ||||||||    
T  36946758 ttaaatgtataatttatatgtgttttctagcaaaaactgaagtgggaacagcaattttt 36946700  T

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