View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1902_low_9 (Length: 362)

Name: NF1902_low_9
Description: NF1902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1902_low_9
NF1902_low_9
[»] scaffold0001 (1 HSPs)
scaffold0001 (16-345)||(416464-416793)


Alignment Details
Target: scaffold0001 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 16 - 345
Target Start/End: Complemental strand, 416793 - 416464
Alignment:
Q  16 ttcactgacaaagaagaattcagagttgcattctccggataatcggtacttctgactgagctaggcattccaacagctgcttcgctactcaattcactgg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  416793 ttcactgacaaagaagaattcagagttgcattctccggataatcggtacttctgactgtgctgggcattccaacagctgcttcgctactcaattcactgg 416694  T
Q  116 aagtggtctgatcacaacaaaaagcttgtcatcagttcaatgtactaaaggcatgaatcaagtgaataagatgctgttttagtttggtaaactgtttaaa 215  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  416693 aaatggtctgatcacaacaaaaagcttgtcatcagttcaatgtactaaaggcatgaatcaagtgaacaagatgctgttttagtttggtaaactgtttaaa 416594  T
Q  216 cgaagggtttcccacattaaattggtttttaagatggtgatcatattgccacgaagaaggaggaaaaaagggtaaatggggtcaagttacttatattttg 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  416593 cgaagggtttcccacattaaattggtttttaagatggtgatcatattgccacgaagaaggaggaaaaaagggtaaatggggtcaagttacttatattttg 416494  T
Q  316 catcaccaaaccaagcacaacggactttat 345  Q
    |||||||||||||||||| |||||||||||    
T  416493 catcaccaaaccaagcacgacggactttat 416464  T

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